Structural organization of the membrane-bound hydrogenase isolated from Alcaligenes eutrophus as revealed by electron microscopy.

Electron microscopy of negatively stained samples of the membrane-bound hydrogenase isolated from Alcaligenes eutrophus was used to obtain enzyme images with an estimated resolution of 2.5 nm. The two subunits with shapes similar to the letter 'U' making up the enzyme could be seen to be joined in two planes orthogonal to each other, making contact with their concave sides. In face-on view, the particle exhibited bilateral symmetry.

Interaction and compartmentalization of the components of bacterial enzyme systems involved in cell energetics.

Bacterial enzyme systems, especially those which are involved in cell energetics, often show a common characteristic feature: their constituents (either interacting enzymes or subunits of a given enzyme complex) are physically separated. They are located in different functional entities, such as cytoplasm or periplasmic space. This kind of cellular and macromolecular organization enables the cell to establish spatially separated but neighbouring zones in which distinct conditions are created or maintained. This intrinsic imbalance is one of the keys for the process of life. As the mediator between the two compartments, the cytoplasm and the periplasmic space, the cytoplasmic membrane--itself a functional entity--not only acts as a barrier, but carries a set of functional enzyme components, thus contributing to the interaction between compartments. Examples to illustrate this concept are enzyme systems involved in anaerobic glycine metabolism, aerobic utilization of carbon monoxide, proton or sodium translocation across the membrane, and intracellular hydrogen cycling used by the cell for the generation of a proton gradient.

Antigenic determinants of the membrane-bound hydrogenase in Alcaligenes eutrophus are exposed toward the periplasm.

Electron microscopic immunogold labeling experiments were performed with ultrathin sections of plasmolyzed cells of Alcaligenes eutrophus and "whole-mount" samples of spheroplasts and protoplasts. They demonstrated that antigenic determinants of the membrane-bound hydrogenase are exposed, at the outside of the cytoplasmic membrane, to the periplasm.

Single-stranded-DNA-binding proteins from human mitochondria and Escherichia coli have analogous physicochemical properties.

The gene for the mature human mitochondrial single-stranded-DNA binding protein (HsmtSSB) has been transferred into a protein-overproducing vector and expressed in Escherichia coli. The protein was purified to homogeneity and its physicochemical properties were investigated. From sequence comparison, HsmtSSB shows some similarities to the N-terminal part of the single-stranded DNA-binding protein (SSB) from E. coli (EcoSSB). Hydrodynamic measurements show the protein to be tetrameric and give a sedimentation coefficient of 4.1 S corresponding to a C-terminally shortened EcoSSB. Electron-microscopic images of the free protein show a globular tetrahedral structure. Binding of poly(desoxythymidylic acid) [poly(dT)] leads to a reduction of the tryptophan fluorescence of the protein up to 96%. Fluorescence titrations with poly(dT) show apparent binding-site sizes of 50-70 nucleotides/tetramer between 0.05 M and 2 M NaCl. Binding to poly(dT) proceeds in a nearly diffusion-controlled reaction with an association-rate constant kass of 4 x 10(8) M-1s-1. The rate-limiting step is the formation of a transient complex where less than four binding sites on the protein are involved and the reshuffling of the protein on the linear matrix is fast. Electron microscopy of the complex with poly(dT) using negative staining shows a nearly random distribution of the protein between the individual poly(dT) strands. This leads to the conclusion that the binding cooperativity is low (omega < 150). The two tryptophans of HsmtSSB were replaced by threonine and tyrosine. The environment of both residues is influenced by nucleic acid binding with mutations of Trp68 strongly reducing the DNA-binding affinity of the protein.