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1.
Nat Immunol ; 17(5): 574-582, 2016 May.
Article in English | MEDLINE | ID: mdl-26998761

ABSTRACT

It has been proposed that the local segregation of kinases and the tyrosine phosphatase CD45 underpins T cell antigen receptor (TCR) triggering, but how such segregation occurs and whether it can initiate signaling is unclear. Using structural and biophysical analysis, we show that the extracellular region of CD45 is rigid and extends beyond the distance spanned by TCR-ligand complexes, implying that sites of TCR-ligand engagement would sterically exclude CD45. We also show that the formation of 'close contacts', new structures characterized by spontaneous CD45 and kinase segregation at the submicron-scale, initiates signaling even when TCR ligands are absent. Our work reveals the structural basis for, and the potent signaling effects of, local CD45 and kinase segregation. TCR ligands have the potential to heighten signaling simply by holding receptors in close contacts.


Subject(s)
Leukocyte Common Antigens/immunology , Receptors, Antigen, T-Cell/immunology , Signal Transduction/immunology , T-Lymphocytes/immunology , Crystallography, X-Ray , HEK293 Cells , Humans , Jurkat Cells , Leukocyte Common Antigens/chemistry , Leukocyte Common Antigens/metabolism , Lymphocyte Specific Protein Tyrosine Kinase p56(lck)/immunology , Lymphocyte Specific Protein Tyrosine Kinase p56(lck)/metabolism , Microscopy, Electron , Microscopy, Fluorescence/methods , Models, Molecular , Protein Structure, Tertiary , Receptors, Antigen, T-Cell/metabolism , T-Lymphocytes/metabolism , Time Factors , ZAP-70 Protein-Tyrosine Kinase/immunology , ZAP-70 Protein-Tyrosine Kinase/metabolism
2.
Cell ; 153(3): 516-9, 2013 Apr 25.
Article in English | MEDLINE | ID: mdl-23622238

ABSTRACT

MicroRNAs (miRNAs) are versatile regulators of gene expression in higher eukaryotes. In order to silence many different mRNAs in a precise manner, miRNA stability and efficacy is controlled by highly developed regulatory pathways and fine-tuning mechanisms both affecting miRNA processing and altering mature miRNA target specificity.


Subject(s)
Gene Expression Regulation , MicroRNAs/genetics , Animals , Humans , MicroRNAs/chemistry , MicroRNAs/metabolism , RNA Processing, Post-Transcriptional , Ribonuclease III/metabolism
3.
EMBO J ; 41(23): e111857, 2022 12 01.
Article in English | MEDLINE | ID: mdl-36245269

ABSTRACT

Perforin-2 (PFN2, MPEG1) is a key pore-forming protein in mammalian innate immunity restricting intracellular bacteria proliferation. It forms a membrane-bound pre-pore complex that converts to a pore-forming structure upon acidification; but its mechanism of conformational transition has been debated. Here we used cryo-electron microscopy, tomography and subtomogram averaging to determine structures of PFN2 in pre-pore and pore conformations in isolation and bound to liposomes. In isolation and upon acidification, the pre-assembled complete pre-pore rings convert to pores in both flat ring and twisted conformations. On membranes, in situ assembled PFN2 pre-pores display various degrees of completeness; whereas PFN2 pores are mainly incomplete arc structures that follow the same subunit packing arrangements as found in isolation. Both assemblies on membranes use their P2 ß-hairpin for binding to the lipid membrane surface. Overall, these structural snapshots suggest a molecular mechanism for PFN2 pre-pore to pore transition on a targeted membrane, potentially using the twisted pore as an intermediate or alternative state to the flat conformation, with the capacity to cause bilayer distortion during membrane insertion.


Subject(s)
Liposomes , Mammals , Animals , Cryoelectron Microscopy , Perforin/analysis , Perforin/chemistry , Perforin/metabolism , Cell Membrane/metabolism , Liposomes/metabolism , Membranes
4.
Eur Biophys J ; 52(8): 619-623, 2023 Nov.
Article in English | MEDLINE | ID: mdl-37994943

ABSTRACT

The European Biophysics Journal Prizes awarded at the European Biophysical Societies Association (EBSA) Congress in Stockholm in the Summer of 2023 recognised papers published in 2020 and 2021 which made use of multiple complementing experimental, theoretical and computational approaches. One of the winning papers addressed the specific role of arginine residues within antimicrobial and cell-penetrating peptides, in promoting membrane defect stabilisation and pore formation. The other winning paper described the influence of atomic force microscopy probe geometry on the measurement of surface deformability, assessed for investigation of the differing viscoelastic properties of non-malignant and cancerous cells. These papers showcase biophysical science; the importance of combining different experimental, modelling and molecular dynamics methods; and how researchers need to understand the theoretical basis and the limitations of the techniques they use. EBSA warmly congratulates the authors on their work and its subsequent recognition. Publication of these papers also demonstrates the ongoing commitment of the European Biophysics Journal to molecular scale and to systems biophysics, and to support of the international biophysical community.


Subject(s)
Awards and Prizes , Cell Membrane , Biophysics , Microscopy, Atomic Force , Peptides
5.
Eur Biophys J ; 52(6-7): 483-486, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37882816

ABSTRACT

The 18th Congress of the Polish Biophysical Society took place at the Faculty of Physics of the University of Warsaw in Warsaw, Poland, in September 2022. In total, 111 attendees (Attendance Profile: 107 in-person, 4 remote; Italy 1, Lithuania 1, Poland 104, United Kingdom 1, United States 4) participated in the event. The authors of lectures and posters at the Congress were invited to prepare their presentations in the form of articles in this special issue of the European Biophysics Journal. The 11 articles published in this special issue present a limited sampling of the subjects of the conference presentations. Nevertheless, they showcase excellence in Polish biophysics across a wide range of topics, using both theoretical and experimental approaches: mechanisms of receptor-ligand interactions, medical applications of proteins and nucleic acids, non-linear dynamics/molecular dynamics of protein systems, hydrodynamics and biosensing. We hope to improve on the representation of the international Polish biophysical community after the next Congress in 2025.


Subject(s)
Biophysics , Humans , Poland , Italy
6.
Eur Biophys J ; 52(4-5): 195-201, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37526680

ABSTRACT

The 25th International Analytical Ultracentrifugation (AUC) Workshops and Symposium (AUC2022) took place at the University of Lethbridge in Lethbridge, Canada, in July 2022. In total, 104 attendees (Attendance Profile: 104 attendees, 69 in-person, 35 remote. Brazil 1, Canada 24, China 1, Czech Republic 2, Finland 1, France 3, Germany 22, India 3, Italy 1, Japan 4, Spain 1, Switzerland 3, Taiwan 1, United Kingdom 5, United States 32) participated in the event and presented the latest advances in the field. While the primary focus of the conference was to showcase the applications of AUC in chemical, life sciences, and nanoparticle disciplines, several presentations also integrated complementary methods, such as isothermal titration calorimetry, microscale thermophoresis, light scattering (static and dynamic), small-angle X-ray scattering, X-ray crystallography, and cryo-electron microscopy. Additionally, the delegates gained valuable hands-on experience from 20 workshops covering a broad range of applications, experimental designs and systems, and the latest software innovations in solution biophysics. The AUC2022 special volume highlights the sustained innovation, utility and relevance of AUC and related solution biophysical methods across various disciplines, including biochemistry, structural biology, synthetic polymer chemistry, carbohydrate chemistry, protein and nucleic acid characterization, nano-science, and macromolecular interactions.


Subject(s)
Software , United States , Humans , Cryoelectron Microscopy , Canada , Ultracentrifugation , Brazil
7.
Compr Rev Food Sci Food Saf ; 22(5): 4053-4073, 2023 09.
Article in English | MEDLINE | ID: mdl-37458307

ABSTRACT

It has been suggested that amylopectin can contain small but significant amounts of extra-long chains (ELCs), which could affect functional properties, and also would have implications for the mechanism of starch biosynthesis. However, current evidence for the existence of ELCs is ambiguous. The amylose/amylopectin separation and the characterization techniques used for the investigation of ELCs are reviewed, problems in those techniques are examined, and studies of ELCs of amylopectin are discussed. A model for the biosynthesis of amylopectin chains in terms of conventional biosynthesis enzymes, which provides an excellent fit to a large amount of experimental data, is used to provide a rigorous definition of ELCs. In addition, current investigations of ELCs, involving separation, is hindered by the lack of a method to quantitatively separate all the amylopectin from starch without any traces of residual amylose (which would have long chains). Unambiguous evidence for the existence of ELCs can be obtained using two-dimensional (2D) characterization, these dimensions being the degree of polymerization of a chain and the size of the whole molecule. Available 2D data indicate that there are no ELCs present in currently detectable quantities in native rice starches. However, concluding this more rigorously requires improvements in the resolution of current 2D methods.


Subject(s)
Amylopectin , Oryza , Amylose , Starch
8.
J Vet Med Educ ; : e20220072, 2023 Jan 25.
Article in English | MEDLINE | ID: mdl-36706018

ABSTRACT

A review of current literature provides ample evidence that Student Evaluation of Teaching, as currently practiced, can be a biased and flawed evaluation of educator performance and student learning. Due to this, many institutions have developed their own internal multimodal approach for faculty evaluation and professional advancement review that removes the underlying bias associated with survey results. Ross University School of Veterinary Medicine created a taskforce to evaluate the current teaching assessment practices and provide an alternative method. Based on an extensive literature review, an institutional policy was created using a multimodal approach, combining student evaluations of teaching scores with peer review of teaching, review of teaching materials, mentorship, self-ratings, and self-reflection. The implementation plan for this policy is described to allow for a teaching evaluation process built on a philosophy of mentorship, guidance, and self-reflection; as well as the use of external professional exam metrics to review the institutional academic quality at large.

9.
Can J Respir Ther ; 59: 8-19, 2023.
Article in English | MEDLINE | ID: mdl-36741304

ABSTRACT

Background: Early extubation (EE), within 8 h of cardiac surgery, is associated with improved resource utilization. Studies have demonstrated that for patients receiving low-dose, fast-track opioid cardiac anesthesia (FTCA) protocols, EE is as safe as conventional care. To date, it is unclear when the earliest timepoints for safe extubation might be. Additionally, some authors pointed out that certain patients receiving FTCA protocols frequently experience delays during extubation attempts. Understanding the factors associated with delayed extubation is crucial for perioperative planning and resource management. This review seeks to 1) determine whether immediate extubation (IE) in the operating room is as safe as EE and 2) identify factors associated with delayed extubation. Methods: MEDLINE, Cochrane Library, EMBASE and CINAHL (up to March 2022) were searched. Studies pertaining to FTCA, IE, EE or factors associated with delayed extubation were included. All authors extracted, appraised and synthesized data. The primary outcome measures were treatment results and factors associated with delayed extubation. Results: Six studies investigated treatment outcomes associated with FTCA and IE. One randomized controlled trial reported that outcomes associated with IE were comparable to those with EE. Five observational studies reported incidence for 19 treatment outcomes associated with IE, but no comparisons were made to EE. Six observational studies assessed pre- and intraoperative factors associated with delayed extubation in FTCA patients. In at least one study, 37 factors were investigated and 22 were identified. The most frequently reported factors were pre-existing cardiac insufficiency or renal disease, time on pump and cross-clamp time. Obesity and stroke were investigated but were not associated with delayed extubation. No study examined the influence of race, ethnicity or gender on outcomes. Discussion and conclusion: Evidence pertaining to treatment outcomes associated with FTCA and IE is weak. Observational studies cannot determine causation. Large multicentre randomized control trials are required to determine the safety of IE. Although numerous factors have been associated with delayed extubation, several studies do not describe how or which factors were selected for examination. Therefore, certain factors may have yet to be evaluated. Future studies should comprehensively define all factors under investigation.

10.
Can J Respir Ther ; 59: 85-94, 2023.
Article in English | MEDLINE | ID: mdl-36999003

ABSTRACT

Objective: Simulation exercises are meant to provide an opportunity for health care workers to improve teamwork and develop clinical skills, among other goals. The objective of this systematic review was to determine whether simulated interdisciplinary activities in the health care or clinical setting improve interprofessional collaboration within health care teams that include respiratory therapists. Methods: A systematic literature search of PubMed, EMBASE and CINAHL was conducted in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-analyses reporting guideline to find relevant articles using both MeSH terms and free text. Filters were applied to include English-language studies; studies published within the last 10 years (2011-2021), and studies involving human participants. Studies were excluded if they did not assess the effects of simulation on aspects of teamwork, if participants were students, if teams did not include respiratory therapists, or if the training did not involve a simulated experience in a clinical setting. The search identified 312 articles, 75 of which were advanced to full-text review. Of those 75 articles, 62 were eliminated for not measuring teamwork in their outcomes. Two articles were excluded for being published before 2011, and one was eliminated for poor methodological quality. A risk of bias assessment using standardized qualitative and quantitative appraisal checklists was conducted on each of the remaining 10 studies selected for inclusion. Results: A total of 10 studies met the inclusion criteria for this review (eight prospective, pre/post-test studies and two prospective observational studies). Randomization and participant/researcher blinding were not present in the majority of the studies and reporting bias was also found to be a concern throughout the literature. However, all of the studies noted increased teamwork scores post-intervention, though they differed in the tools used to evaluate this outcome. Discussion: Collectively, the studies included in this review demonstrate that interprofessional simulation experiences including respiratory therapists enhance teamwork. The various tools used to assess change in teamwork had evidence of validity; however, studies varied in their outcomes measured, making quantitative analysis inappropriate. There are challenges involved in creating and assessing these simulations, particularly when performed within a clinical environment, which make it difficult to fully remove bias from the study design. It is unclear if the teamwork improvement can strictly be attributed to the simulation intervention or in part due to the general development of team members' competencies throughout the research period. Additionally, the permanency of the effects cannot be evaluated based on the studies included and could be an area for future research. Conclusion: Despite the limited number and methodological precision of studies included in this review along with the differing outcome evaluation methods, the authors conclude that positive teamwork improvement results are generalizable and agree with the broader base of research of the effectiveness of simulation on teambuilding.

11.
Mol Cell ; 53(4): 645-54, 2014 Feb 20.
Article in English | MEDLINE | ID: mdl-24486019

ABSTRACT

Efficient stop codon recognition and peptidyl-tRNA hydrolysis are essential in order to terminate translational elongation and maintain protein sequence fidelity. Eukaryotic translational termination is mediated by a release factor complex that includes eukaryotic release factor 1 (eRF1) and eRF3. The N terminus of eRF1 contains highly conserved sequence motifs that couple stop codon recognition at the ribosomal A site to peptidyl-tRNA hydrolysis. We reveal that Jumonji domain-containing 4 (Jmjd4), a 2-oxoglutarate- and Fe(II)-dependent oxygenase, catalyzes carbon 4 (C4) lysyl hydroxylation of eRF1. This posttranslational modification takes place at an invariant lysine within the eRF1 NIKS motif and is required for optimal translational termination efficiency. These findings further highlight the role of 2-oxoglutarate/Fe(II) oxygenases in fundamental cellular processes and provide additional evidence that ensuring fidelity of protein translation is a major role of hydroxylation.


Subject(s)
Gene Expression Regulation , Histone Demethylases/metabolism , Mixed Function Oxygenases/chemistry , Peptide Chain Termination, Translational/genetics , Peptide Termination Factors/chemistry , Protein Biosynthesis , Amino Acid Sequence , Animals , Catalysis , Cell Line, Tumor , Codon, Terminator , HeLa Cells , Humans , Hydrolysis , Hydroxylation , Jumonji Domain-Containing Histone Demethylases , Models, Molecular , Molecular Sequence Data , Protein Processing, Post-Translational , Protein Structure, Tertiary , Sequence Homology, Amino Acid
12.
Biomacromolecules ; 22(11): 4730-4737, 2021 11 08.
Article in English | MEDLINE | ID: mdl-34669391

ABSTRACT

Granule-bound starch synthase (GBSS) plays a major role, that of chain elongation, in the biosynthesis of amylose, a starch component with mostly (1 → 4)-α connected long chains of glucose with a few (1 → 6)-α branch points. Chain-length distributions (CLDs) of amylose affect functional properties, which can be controlled by changing appropriate residues on granule-bound starch synthase (GBSS). Knowing the binding of GBSS and amylose at a molecular level can help better determine the key amino acids on GBSS that affect CLDs of amylose for subsequent use in molecular engineering. Atomistic molecular dynamics simulations with explicit solvent and docking approaches were used in this study to build a model of the binding between rice GBSS and amylose. Amylose fragments containing 3-12 linearly linked glucose units were built to represent the starch fragments. The stability of the complexes, interactions between GBSS and sugars, and difference in structure/conformation of bound and free starch fragments were analyzed. The study found that starch/amylose fragments with 5 or 6 glucose units were suitable for modeling starch binding to GBSS. The removal of an interdomain disulfide on GBSS was found to affect both GBSS and starch stability. Key residues that could affect the binding ability were also indicated. This model can help rationalize the design of mutants and suggest ways to make single-point mutations, which could be used to develop plants producing starches with improved functional properties.


Subject(s)
Oryza , Starch Synthase , Amylose , Starch , Starch Synthase/genetics
13.
Biomacromolecules ; 22(5): 2148-2159, 2021 05 10.
Article in English | MEDLINE | ID: mdl-33914519

ABSTRACT

The main enzymes controlling the chain-length distributions (CLDs) of starches are starch synthases (SSs), starch branching enzymes (SBEs), and debranching enzymes (DBEs), which have various isoforms, denoted as SSI, SSII-1, etc. Different isozymes dominate the CLD in different ranges of degrees of polymerization (DPs). Models have been developed for the CLDs in terms of the activities of isoforms of these enzymes, in terms of two parameters: ßi, which is the ratio of the activity of SBE to that of SS in set i, and hi, which is the relative activity of SS in that set. These provide good fits to data but without specifying which isozymes are in set i. Here, CLDs for amylopectin and amylose synthesis in rice endosperm are explored. Molecular weight distributions of the different chains formed in 87 rice varieties were obtained using size-exclusion chromatography following enzymatic debranching (converting a complex branched macromolecule to linear polymers), and fitted by the biosynthesis-based models. The mutants of each isoform among tested rice varieties were identified by amino-acid mutations in coding sequences based on the extraction and analysis of whole gene sequences. The significant differences between mutant groups of different isoforms indicate that SSI, SSII-3, SSIII-1, SSIII-2, and SBEI as well as GBSSI (an isozyme of granule-bound starch synthase) belong to the enzymes sets that control amylose biosynthesis. Further, GBSSI is in the enzyme sets that control amylopectin chains. This enables specification of all isozymes and the DP range, which they dominate, over the entire DP range. As the CLD controls many functional properties of rice, this can help breeders target and develop improved rice species.


Subject(s)
1,4-alpha-Glucan Branching Enzyme , Oryza , 1,4-alpha-Glucan Branching Enzyme/genetics , Amylopectin , Amylose , Endosperm/genetics , Oryza/genetics , Starch
14.
Biomacromolecules ; 20(7): 2821-2829, 2019 07 08.
Article in English | MEDLINE | ID: mdl-31244022

ABSTRACT

Glycogen, a randomly branched glucose polymer, provides energy storage in organisms. It forms small ß particles which in animals bind to form composite α particles, which give better glucose release. Simulations imply ß particle size is controlled only by activities and sizes of glycogen biosynthetic enzymes and sizes of polymer chains. Thus, storing more glucose requires forming more ß particles, which are expected to sometimes form α particles. No α particles have been reported in bacteria, but the extraction techniques might have caused degradation. Using milder glycogen extraction techniques on Escherichia coli, transmission electron microscopy and size-exclusion chromatography showed α particles, consistent with this hypothesis for α-particle formation. Molecular density and size distributions show similarities with animal glycogen, despite very different metabolic processes. These general polymer constraints are such that any organism which needs to store and then release glucose will have similar α and ß particle structures: a type of convergent evolution.


Subject(s)
Escherichia coli/chemistry , Glucose/chemistry , Glycogen/chemistry , Polymers/chemistry , Alpha Particles , Beta Particles , Energy Metabolism/genetics , Escherichia coli/ultrastructure , Glycogen/ultrastructure , Microscopy, Electron, Transmission
15.
J Dairy Sci ; 102(4): 3754-3765, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30772031

ABSTRACT

Diseases of postpartum dairy cows impair reproductive processes, resulting in prolonged anestrus, reduced conception, and increased pregnancy attrition, regardless of whether the initial disease precedes insemination (even by many weeks), occurs close to insemination, or follows fertilization. Bacteria and their products activate pattern recognition receptors that respond to pathogen-associated molecular patterns (PAMP). These receptors include toll-like receptors (TLR), nucleotide-binding oligomerization domain (NOD)-like receptors and others, and their activation culminates in upregulation of proinflammatory cytokines such as IL-1ß, IL-18, and tumor necrosis factor-α. These may have direct effects on the uterus and conceptus. Importantly, however, these inflammatory mediators, as well as the bacterial products, make their way to the ovary via the general circulation (even from distant sites) or possibly by using the countercurrent vascular mechanism that normally transports endometrial prostaglandin to the ipsilateral ovary. Endotoxin reaches concentrations in follicular fluid that exceed those found in the circulation or even in the infected uterus. Ovarian follicular cells also express TLR and can respond directly to bacterial products including endotoxin, impairing their function. Inflammation is accompanied by increased oxidative stress. The process of oocyte development from activation of primordial oocytes to potential ovulation spans 4 mo. Competence by an oocyte encompasses the ability to undergo not only fertilization but also a complex cytoplasmic maturation that lays the foundation for completion of meiosis at the appropriate time, the transition to mitosis in the zygote, and further development of the conceptus. Oocyte maturation relies on intimate association between cumulus cells and the oocyte, characterized by gap junctions through which molecules of various sizes pass. Signaling also occurs in the oocyte-to-cumulus cell direction. Because both granulosa and theca interna cells are capable of responding to inflammatory mediators, with observed alterations in some functions, it seems likely that disturbed ovarian follicular function may contribute to failure of oocytes to become fully competent, even if the insult occurs well before ovulation. Therefore, interruption of normal fertility by uterine infections may be mediated at the level of the uterine environment but the effect on the ovary and oocyte is likely to be even more important.


Subject(s)
Bacterial Infections/veterinary , Cattle Diseases , Infertility, Female/veterinary , Puerperal Disorders/veterinary , Reproductive Tract Infections/veterinary , Animals , Bacterial Infections/complications , Cattle , Cattle Diseases/microbiology , Female , Fertility/physiology , Fertilization/physiology , Follicular Fluid , Infertility, Female/microbiology , Oocytes/physiology , Ovarian Follicle/physiopathology , Ovary/physiopathology , Ovulation , Pregnancy , Puerperal Disorders/microbiology , Reproductive Tract Infections/complications , Reproductive Tract Infections/microbiology
16.
Trends Biochem Sci ; 39(11): 510-6, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25440714

ABSTRACT

Pore-forming proteins (PFPs) interact with lipid bilayers to compromise membrane integrity. Many PFPs function by inserting a ring of oligomerized subunits into the bilayer to form a protein-lined hydrophilic channel. However, mounting evidence suggests that PFPs can also generate 'proteolipidic' pores by contributing to the fusion of inner and outer bilayer leaflets to form a toroidal structure. We discuss here toroidal pore formation by peptides including melittin, protegrin, and Alzheimer's Aß1-41, as well as by PFPs from several evolutionarily unrelated families: the colicin/Bcl-2 grouping including the pro-apoptotic protein Bax, actinoporins derived from sea anemones, and the membrane attack complex-perforin/cholesterol dependent cytolysin (MACPF/CDC) set of proteins. We also explore how the structure and biological role of toroidal pores might be investigated further.


Subject(s)
Cell Membrane/chemistry , Lipid Bilayers/chemistry , Membrane Lipids/chemistry , Pore Forming Cytotoxic Proteins/chemistry , Cell Membrane/metabolism , Colicins/chemistry , Colicins/metabolism , Lipid Bilayers/metabolism , Melitten/chemistry , Melitten/metabolism , Membrane Lipids/metabolism , Models, Molecular , Pore Forming Cytotoxic Proteins/metabolism , Protein Binding , Protein Structure, Secondary , Protein Structure, Tertiary
17.
J Virol ; 91(21)2017 11 01.
Article in English | MEDLINE | ID: mdl-28835498

ABSTRACT

Hantaviruses are zoonotic pathogens that cause severe hemorrhagic fever and pulmonary syndrome. The outer membrane of the hantavirus envelope displays a lattice of two glycoproteins, Gn and Gc, which orchestrate host cell recognition and entry. Here, we describe the crystal structure of the Gn glycoprotein ectodomain from the Asiatic Hantaan virus (HTNV), the most prevalent pathogenic hantavirus. Structural overlay analysis reveals that the HTNV Gn fold is highly similar to the Gn of Puumala virus (PUUV), a genetically and geographically distinct and less pathogenic hantavirus found predominantly in northeastern Europe, confirming that the hantaviral Gn fold is architecturally conserved across hantavirus clades. Interestingly, HTNV Gn crystallized at acidic pH, in a compact tetrameric configuration distinct from the organization at neutral pH. Analysis of the Gn, both in solution and in the context of the virion, confirms the pH-sensitive oligomeric nature of the glycoprotein, indicating that the hantaviral Gn undergoes structural transitions during host cell entry. These data allow us to present a structural model for how acidification during endocytic uptake of the virus triggers the dissociation of the metastable Gn-Gc lattice to enable insertion of the Gc-resident hydrophobic fusion loops into the host cell membrane. Together, these data reveal the dynamic plasticity of the structurally conserved hantaviral surface.IMPORTANCE Although outbreaks of Korean hemorrhagic fever were first recognized during the Korean War (1950 to 1953), it was not until 1978 that they were found to be caused by Hantaan virus (HTNV), the most prevalent pathogenic hantavirus. Here, we describe the crystal structure of HTNV envelope glycoprotein Gn, an integral component of the Gn-Gc glycoprotein spike complex responsible for host cell entry. HTNV Gn is structurally conserved with the Gn of a genetically and geographically distal hantavirus, Puumala virus, indicating that the observed α/ß fold is well preserved across the Hantaviridae family. The combination of our crystal structure with solution state analysis of recombinant protein and electron cryo-microscopy of acidified hantavirus allows us to propose a model for endosome-induced reorganization of the hantaviral glycoprotein lattice. This provides a molecular-level rationale for the exposure of the hydrophobic fusion loops on the Gc, a process required for fusion of viral and cellular membranes.


Subject(s)
Glycoproteins/chemistry , Hantavirus Infections/metabolism , Orthohantavirus/physiology , Viral Envelope Proteins/chemistry , Virion/physiology , Animals , Chlorocebus aethiops , Cryoelectron Microscopy , Orthohantavirus/ultrastructure , Hantavirus Infections/virology , Humans , Models, Molecular , Phylogeny , Protein Structure, Tertiary , Puumala virus/chemistry , Vero Cells , Virion/ultrastructure
18.
Headache ; 58(10): 1689-1696, 2018 11.
Article in English | MEDLINE | ID: mdl-30426478

ABSTRACT

BACKGROUND: Migraine impacts more than 36 million people in the United States and 1 billion people worldwide. Despite the increasing availability of acute and preventive therapies, there is still tremendous unmet need. Potential treatments in development include monoclonal antibodies (mAbs). Appropriate use of these "biologic" treatments will necessitate an understanding of the aspects that distinguish them from traditional medications. AIM: Many drug classes are prescribed for migraine treatment, but all have limitations. Recently, calcitonin gene-related peptide (CGRP) activity has shown a significant promise as a target for preventive therapy. In this review, we provide an overview of the potential role of CGRP mAbs in migraine, with a focus on their design, pharmacokinetics, safety, and immunogenicity. CONCLUSIONS: The CGRP mAbs are an innovative new therapy for migraine and address the need for effective and tolerable preventive options. MAbs, including those that target CGRP or its receptor, bind to a target with high specificity and affinity and lead to few off-target adverse effects, although mechanism-based adverse reactions may occur. Unlike other therapeutic antibodies used to treat neurologic disease, CGRP mAbs do not have a target within the immune system and have been designed to avoid altering the immune system. The safety and efficacy of mAbs against CGRP or its receptors are being investigated in clinical development programs, and the first of these therapies has received regulatory approval in the United States.


Subject(s)
Antibodies, Monoclonal/therapeutic use , Calcitonin Gene-Related Peptide Receptor Antagonists/therapeutic use , Migraine Disorders/prevention & control , Antibodies, Anti-Idiotypic/biosynthesis , Antibodies, Monoclonal/adverse effects , Antibodies, Monoclonal/immunology , Antibodies, Monoclonal/pharmacokinetics , Calcitonin Gene-Related Peptide/antagonists & inhibitors , Calcitonin Gene-Related Peptide/immunology , Calcitonin Gene-Related Peptide/physiology , Calcitonin Gene-Related Peptide Receptor Antagonists/adverse effects , Humans , Migraine Disorders/drug therapy , Migraine Disorders/physiopathology , Receptors, Calcitonin Gene-Related Peptide/immunology , Receptors, Calcitonin Gene-Related Peptide/physiology
19.
Biochem J ; 474(4): 539-556, 2017 02 15.
Article in English | MEDLINE | ID: mdl-27974389

ABSTRACT

Kindlins co-activate integrins alongside talin. They possess, like talin, a FERM domain (4.1-erythrin-radixin-moiesin domain) comprising F0-F3 subdomains, but with a pleckstrin homology (PH) domain inserted in the F2 subdomain that enables membrane association. We present the crystal structure of murine kindlin-3 PH domain determined at a resolution of 2.23 Šand characterise its lipid binding using biophysical and computational approaches. Molecular dynamics simulations suggest flexibility in the PH domain loops connecting ß-strands forming the putative phosphatidylinositol phosphate (PtdInsP)-binding site. Simulations with PtdInsP-containing bilayers reveal that the PH domain associates with PtdInsP molecules mainly via the positively charged surface presented by the ß1-ß2 loop and that it binds with somewhat higher affinity to PtdIns(3,4,5)P3 compared with PtdIns(4,5)P2 Surface plasmon resonance (SPR) with lipid headgroups immobilised and the PH domain as an analyte indicate affinities of 300 µM for PtdIns(3,4,5)P3 and 1 mM for PtdIns(4,5)P2 In contrast, SPR studies with an immobilised PH domain and lipid nanodiscs as the analyte show affinities of 0.40 µM for PtdIns(3,4,5)P3 and no affinity for PtdIns(4,5)P2 when the inositol phosphate constitutes 5% of the total lipids (∼5 molecules per nanodisc). Reducing the PtdIns(3,4,5)P3 composition to 1% abolishes nanodisc binding to the PH domain, as does site-directed mutagenesis of two lysines within the ß1-ß2 loop. Binding of PtdIns(3,4,5)P3 by a canonical PH domain, Grp1, is not similarly influenced by SPR experimental design. These data suggest a role for PtdIns(3,4,5)P3 clustering in the binding of some PH domains and not others, highlighting the importance of lipid mobility and clustering for the biophysical assessment of protein-membrane interactions.


Subject(s)
Cytoskeletal Proteins/chemistry , Phosphatidylcholines/chemistry , Phosphatidylinositols/chemistry , Phosphatidylserines/chemistry , Pleckstrin Homology Domains , Receptors, Cytoplasmic and Nuclear/chemistry , Amino Acid Sequence , Animals , Binding Sites , Cloning, Molecular , Crystallography, X-Ray , Cytoskeletal Proteins/genetics , Cytoskeletal Proteins/metabolism , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Kinetics , Mice , Molecular Dynamics Simulation , Phosphatidylcholines/metabolism , Phosphatidylinositols/metabolism , Phosphatidylserines/metabolism , Protein Binding , Protein Conformation, alpha-Helical , Protein Conformation, beta-Strand , Protein Interaction Domains and Motifs , Receptors, Cytoplasmic and Nuclear/genetics , Receptors, Cytoplasmic and Nuclear/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Alignment , Sequence Homology, Amino Acid
20.
Proc Natl Acad Sci U S A ; 112(17): 5431-6, 2015 Apr 28.
Article in English | MEDLINE | ID: mdl-25870286

ABSTRACT

Successful mammalian reproduction requires that sperm migrate through a long and convoluted female reproductive tract before reaching oocytes. For many years, fertility studies have focused on biochemical and physiological requirements of sperm. Here we show that the biophysical environment of the female reproductive tract critically guides sperm migration, while at the same time preventing the invasion of sexually transmitted pathogens. Using a microfluidic model, we demonstrate that a gentle fluid flow and microgrooves, typically found in the female reproductive tract, synergistically facilitate bull sperm migration toward the site of fertilization. In contrast, a flagellated sexually transmitted bovine pathogen, Tritrichomonas foetus, is swept downstream under the same conditions. We attribute the differential ability of sperm and T. foetus to swim against flow to the distinct motility types of sperm and T. foetus; specifically, sperm swim using a posterior flagellum and are near-surface swimmers, whereas T. foetus swims primarily via three anterior flagella and demonstrates much lower attraction to surfaces. This work highlights the importance of biophysical cues within the female reproductive tract in the reproductive process and provides insight into coevolution of males and females to promote fertilization while suppressing infection. Furthermore, the results provide previously unidentified directions for the development of in vitro fertilization devices and contraceptives.


Subject(s)
Cervix Uteri , Fallopian Tubes , Fertility/physiology , Sperm Motility , Spermatozoa , Tritrichomonas foetus/metabolism , Abortion, Veterinary/metabolism , Abortion, Veterinary/pathology , Animals , Cattle , Cattle Diseases/metabolism , Cattle Diseases/pathology , Cervix Uteri/anatomy & histology , Cervix Uteri/physiology , Fallopian Tubes/anatomy & histology , Fallopian Tubes/physiology , Female , Male , Protozoan Infections/metabolism , Protozoan Infections/pathology
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