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1.
J Pharmacol Exp Ther ; 347(2): 375-87, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23995598

ABSTRACT

The role of metabolism in daunorubicin (DAUN)- and doxorubicin (DOX)-associated toxicity in cancer patients is dependent on whether the parent drugs or major metabolites, doxorubicinol (DOXol) and daunorubicinol (DAUNol), are the more toxic species. Therefore, we examined whether an association exists between cytotoxicity and the metabolism of these drugs in cell lines from nine different tissues. Cytotoxicity studies using MTT [3-(4,5-dimethythiazol-2-yl)-2,5-diphenyl tetrazolium bromide] cell viability assays revealed that four cell lines [HepG2 (liver), HCT-15 (colon), NCI-H460 (lung), and A-498 (kidney)] were more tolerant to DAUN and DOX than the five remaining cell lines [H9c2 (heart), PC-3 (prostate), OVCAR-4 (ovary), PANC-1 (pancreas), and MCF-7 (breast)], based on significantly higher LC50 values at incubation times of 6, 24, and 48 hours. Each cell line was also assessed for its efficiency at metabolizing DAUN and DOX. The four drug-tolerant cell lines converted DAUN/DOX to DAUNol/DOXol more rapidly than the five drug-sensitive cell lines. We also determined whether exposure to DAUN or DOX induced an increase in metabolic activity among any of these nine different cell types. All nine cell types showed a significant increase in their ability to metabolize DAUN or DOX in response to pre-exposure to the drug. Western blot analyses demonstrated that the increased metabolic activity toward DAUN and DOX correlated with a greater abundance of eight aldo-keto and two carbonyl reductases following exposure to either drug. Overall, our findings indicate an inverse relationship between cytotoxicity and DAUN or DOX metabolism in these nine cell lines.


Subject(s)
Alcohol Oxidoreductases/metabolism , Antibiotics, Antineoplastic/metabolism , Antibiotics, Antineoplastic/toxicity , Doxorubicin/analogs & derivatives , Aldehyde Reductase , Aldo-Keto Reductases , Animals , Cell Culture Techniques , Cell Line , Cell Survival/drug effects , Daunorubicin/analogs & derivatives , Daunorubicin/metabolism , Daunorubicin/toxicity , Doxorubicin/metabolism , Doxorubicin/toxicity , Humans , Lethal Dose 50 , Organ Specificity , Rats , Species Specificity
2.
J Pharmacol Exp Ther ; 335(3): 533-45, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20837989

ABSTRACT

Doxorubicin (DOX) and daunorubicin (DAUN) are effective anticancer drugs; however, considerable interpatient variability exists in their pharmacokinetics. This may be caused by altered metabolism by nonsynonymous single-nucleotide polymorphisms (ns-SNPs) in genes encoding aldo-keto reductases (AKRs) and carbonyl reductases. This study examined the effect of 27 ns-SNPs, in eight human genes, on the in vitro metabolism of both drugs to their major metabolites, doxorubicinol and daunorubicinol. Kinetic assays measured metabolite levels by high-performance liquid chromatography separation with fluorescence detection using purified, histidine-tagged, human wild-type, and variant enzymes. Maximal rate of activity (V(max)), substrate affinity (K(m)), turnover rate (k(cat)), and catalytic efficiency (k(cat)/K(m)) were determined. With DAUN as substrate, variants for three genes exhibited significant differences in these parameters compared with their wild-type counterparts: the A106T, R170C, and P180S variants significantly reduced metabolism compared with the AKR1C3 wild-type (V(max), 23-47% decrease; k(cat), 22-47%; k(cat)/K(m), 38-44%); the L311V variant of AKR1C4 significantly decreased V(max) (47% lower) and k(cat) and k(cat)/K(m) (both 43% lower); and the A142T variant of AKR7A2 significantly affected all kinetic parameters (V(max) and k(cat), 61% decrease; K(m), 156% increase; k(cat)/K(m), 85% decrease). With DOX, the R170C and P180S variants of AKR1C3 showed significantly reduced V(max) (41-44% decrease), k(cat) (39-45%), and k(cat)/K(m) (52-69%), whereas the A142T variant significantly altered all kinetic parameters for AKR7A2 (V(max), 41% decrease; k(cat), 44% decrease; K(m), 47% increase; k(cat)/K(m), 60% decrease). These findings suggest that ns-SNPs in human AKR1C3, AKR1C4, and AKR7A2 significantly decrease the in vitro metabolism of DOX and DAUN.


Subject(s)
Alcohol Oxidoreductases/genetics , Alcohol Oxidoreductases/metabolism , Daunorubicin/metabolism , Doxorubicin/metabolism , Polymorphism, Single Nucleotide/physiology , 20-Hydroxysteroid Dehydrogenases/genetics , 20-Hydroxysteroid Dehydrogenases/metabolism , 3-Hydroxysteroid Dehydrogenases/genetics , 3-Hydroxysteroid Dehydrogenases/metabolism , Aldehyde Reductase/genetics , Aldehyde Reductase/metabolism , Aldo-Keto Reductase Family 1 Member C3 , Aldo-Keto Reductases , Biocatalysis , Gene Frequency , Glyceraldehyde/metabolism , Humans , Hydroxyprostaglandin Dehydrogenases/genetics , Hydroxyprostaglandin Dehydrogenases/metabolism , Hydroxysteroid Dehydrogenases/genetics , Hydroxysteroid Dehydrogenases/metabolism , Indans/metabolism , Kinetics , Mitochondrial Proteins/genetics , Mitochondrial Proteins/metabolism , Models, Molecular , NAD(P)H Dehydrogenase (Quinone)/genetics , NAD(P)H Dehydrogenase (Quinone)/metabolism , Oxidoreductases/genetics , Oxidoreductases/metabolism , Phenanthrenes/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Vitamin K 3/metabolism
3.
J Pharmacol Exp Ther ; 332(3): 755-63, 2010 Mar.
Article in English | MEDLINE | ID: mdl-20007405

ABSTRACT

Doxorubicin (DOX) and daunorubicin (DAUN) are anthracycline anticancer agents; however, considerable interpatient variability exists in their pharmacokinetics. This interpatient variability is attributed in part to altered metabolism by nonsynonymous single-nucleotide polymorphisms (ns-SNPs) in genes encoding the carbonyl reductases. This study examines the effect of seven naturally occurring ns-SNPs in the CBR3 gene on in vitro metabolism of anthracyclines to doxorubicinol and daunorubicinol. Kinetic assays measure metabolite levels by high-performance liquid chromatography separation with fluorescence detection by use of purified, histidine-tagged, human CBR3 wild type and variant enzymes. The V224M, C4Y, and V93I variants resulted in significantly reduced maximal reaction velocity (V(max)) for both anthracyclines compared with the wild-type enzyme, whereas the M235L variant had significantly reduced V(max) for DOX only. Significant increases in substrate affinity were found for the V244M variant with DAUN, as well as the C4Y and V93I variants with DOX. The catalytic efficiency values for the V244M, C4Y, and V93I variants were significantly lower than the wild type for DAUN and DOX. Furthermore, DOX was observed to be a better substrate than DAUN for the wild-type enzyme and its variants. HapMap analysis indicated that a haplotype carrying the C4Y and V244M mutations may occur in some individuals in the 11 ethnic populations studied in the HapMap project. Our preparation of the double mutant indicated a significant reduction in activity compared with the wild-type enzyme and single-mutant preparations. These findings suggest that commonly occurring ns-SNPs in human CBR3 significantly alter the in vitro metabolism of DOX and DAUN.


Subject(s)
Alcohol Oxidoreductases/chemistry , Antibiotics, Antineoplastic/chemistry , Daunorubicin/chemistry , Doxorubicin/chemistry , Alcohol Oxidoreductases/genetics , Humans , Polymorphism, Single Nucleotide , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Vitamin K 3/chemistry
4.
J Pharmacol Exp Ther ; 329(3): 1032-9, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19258517

ABSTRACT

Aldo-keto reductase (AKR) 1C2 is a human, cytosolic enzyme that has an important role in the deactivation of the potent androgen dihydrotestosterone (DHT). AKR1C2 can regulate the extent and duration of activation of the androgen receptor by catalyzing the reduction of DHT to the less potent receptor ligand 3alpha-diol. In this study, we functionally characterize in vitro the effect of 11 naturally occurring nonsynonymous single nucleotide polymorphisms on the ability of AKR1C2 to reduce DHT to 3alpha-diol. The wild-type and variant enzymes were expressed using a transfected insect cell system, and their kinetic activities were measured using both a specific fluorogenic probe and DHT as substrates. This functional characterization demonstrates that several variant AKR1C2 proteins have significantly reduced or altered reductase activities as shown by their measured kinetic parameters. Data from our two separate in vitro studies revealed significant reductions in V(max) for two variants (F46Y and L172Q) and significantly lower apparent K(m) values for three variants (L172Q, K185E, and R258C) compared with the wild type. These results provide evidence that several naturally occurring nonsynonymous single nucleotide polymorphisms in AKR1C2 result in reduced enzyme activities. These variant AKR1C2 alleles may represent one factor involved in the variable degradation of DHT in vivo.


Subject(s)
Dihydrotestosterone/metabolism , Hydroxysteroid Dehydrogenases/genetics , Hydroxysteroid Dehydrogenases/metabolism , Polymorphism, Single Nucleotide/physiology , Androstane-3,17-diol/metabolism , Animals , Catalysis , Cell Line , Fluorescent Dyes/metabolism , Humans , Kinetics , Oxidation-Reduction , Recombinant Proteins/metabolism , Spodoptera
5.
Drug Metab Dispos ; 37(5): 1107-14, 2009 May.
Article in English | MEDLINE | ID: mdl-19204081

ABSTRACT

Carbonyl reductases (CBRs) are a group of metabolic enzymes belonging to the short-chain dehydrogenase family with NADPH-dependent oxidoreductase activity. These enzymes are known to metabolize the anthracyclines doxorubicin (DOX) and daunorubicin (DAUN). Both DOX and DAUN are highly effective in cancer therapy; however, there is considerable interpatient variability in adverse effects seen in patients undergoing treatment with these drugs. This may be attributed to altered metabolism associated with nonsynonymous single nucleotide polymorphisms (ns-SNPs) in the genes encoding for CBRs. In this study, we examine the effect of the V88I and P131S mutations in the human CBR1 gene on the metabolism of anthracyclines to their respective major metabolites, doxorubicinol and daunorubicinol. Kinetic studies using purified, histidine-tagged, recombinant enzymes in a high-performance liquid chromatography-fluorescence assay demonstrated that the V88I mutation leads to a significantly reduced maximal rate of activity (V(max)) (2090 +/- 112 and 257 +/- 11 nmol/min x mg of purified protein for DAUN and DOX, respectively) compared with that for the wild-type (3430 +/- 241 and 364 +/- 37 nmol/min x mg of purified protein for DAUN and DOX, respectively). In the case of the P131S mutation, a significant increase in substrate affinity (K(m)) was observed for DAUN only (89 +/- 13 microM) compared with that for the wild-type (51 +/- 13 microM). In the presence of either anthracycline, both variants exhibited a 20 to 40% decrease in catalytic efficiency (k(cat)/K(m)) compared with that for the wild-type enzyme. Therefore, the ns-SNPs generating both these mutations may alter bioavailability of these anthracyclines in cancer patients and should be examined in clinical studies as potential biomarkers for DAUN- and DOX-induced adverse effects.


Subject(s)
Alcohol Oxidoreductases/genetics , Alcohol Oxidoreductases/metabolism , Antibiotics, Antineoplastic/metabolism , Daunorubicin/metabolism , Doxorubicin/metabolism , Polymorphism, Single Nucleotide/genetics , Alleles , Biotransformation , Chromatography, High Pressure Liquid , Cloning, Molecular , Humans , Kinetics , Models, Molecular , Recombinant Proteins/metabolism , Vitamin K 3/metabolism
6.
Biochemistry ; 47(35): 9098-106, 2008 Sep 02.
Article in English | MEDLINE | ID: mdl-18690710

ABSTRACT

RS1, also known as retinoschisin, is an extracellular discoidin domain-containing protein that has been implicated in maintaining the cellular organization and synaptic structure of the vertebrate retina. Mutations in the gene encoding RS1 are responsible for X-linked retinoschisis, a retinal degenerative disease characterized by the splitting of the retinal cell layers and visual impairment. To better understand the role of RS1 in retinal cell biology and X-linked retinoschisis, we have studied the interaction of wild-type and mutant RS1 with various carbohydrates coupled to agarose supports. RS1 bound efficiently to galactose-agarose and to a lesser extent lactose-agarose, but not agarose, N-acetylgalactosamine-agarose, N-acetylglucosamine-agarose, mannose-agarose, or heparin-agarose. RS1 cysteine mutants (C59S/C223S and C59S/C223S/C40S) which prevent disulfide-linked octamer formation exhibited little if any binding to galactose-agarose. The disease-causing R141H mutant bound galactose-agarose at levels similar to that of wild-type RS1, whereas the R141S mutant resulted in a marked reduction in the level of galactose-agarose binding. RS1 bound to galactose-agarose could be effectively displaced by incubation with isopropyl beta- d-1-thiogalactopyranoside (IPTG). This property was used as a basis to develop an efficient purification procedure. Anion exchange and galactose affinity chromatography was used to purify RS1 from the culture media of stably transformed Sf21 insect cells that express and secrete RS1. This cell expression and protein purification method should prove useful in the isolation of RS1 for detailed structure-function studies.


Subject(s)
Eye Proteins/isolation & purification , Eye Proteins/metabolism , Galactose/metabolism , Lectins/chemistry , Protozoan Proteins/chemistry , Animals , Binding Sites , Cells, Cultured , Discoidins , Eye Proteins/chemistry , Humans , Protein Structure, Tertiary
7.
Drug Metab Dispos ; 36(6): 991-4, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18322072

ABSTRACT

The anthracycline drugs are important for the treatment of a number of malignancies; however, their clinical use is associated with dose-dependent severe chronic cardiotoxicity. Although the mechanism for this side effect has not yet been identified, the alcohol metabolites formed during daunorubicin (DAUN) and doxorubicin (DOX) therapies have been implicated. The alcohol metabolites of DAUN and DOX, daunorubicinol (DAUNol) and doxorubicinol (DOXol), respectively, are generated through reduction of the C-13 carbonyl function, which is reportedly mediated by members of the aldo-keto reductase and carbonyl reductase families of proteins. In our search for potential biomarkers for the occurrence of this side effect, we examined the activity of recombinant aldo-keto reductase enzymes, aldo-keto reductase (AKR) 1A1 and AKR1C2, with DAUN and DOX as substrates. Using purified histidine-tagged recombinant proteins and the direct measurement of metabolite formation with a high-performance liquid chromatography-fluorescence assay, we did not observe DAUNol or DOXol generation in vitro by AKR1C2, whereas AKR1A1 did catalyze the reduction reactions. DAUNol was generated by AKR1A1 at a rate of 1.71 +/- 0.09 nmol/min/mg protein, and a low level of DOXol was produced by AKR1A1; however, it was below the limits of quantification for the method. These data suggest that the generation of DAUNol or DOXol by AKR1C2 metabolism in vivo is unlikely to occur during anthracycline treatment.


Subject(s)
Alcohol Oxidoreductases/metabolism , Antibiotics, Antineoplastic/metabolism , Daunorubicin/metabolism , Doxorubicin/metabolism , Hydroxysteroid Dehydrogenases/metabolism , Recombinant Proteins/metabolism , Alcohol Oxidoreductases/genetics , Aldehyde Reductase , Aldo-Keto Reductases , Chromatography, High Pressure Liquid , Daunorubicin/analogs & derivatives , Doxorubicin/analogs & derivatives , Fluorescence , Humans , Hydroxysteroid Dehydrogenases/genetics , Recombinant Proteins/genetics
8.
Drug Metab Dispos ; 36(5): 904-10, 2008 May.
Article in English | MEDLINE | ID: mdl-18276838

ABSTRACT

Aldo-keto reductases (AKRs) are a class of NADPH-dependent oxidoreductases that have been linked to metabolism of the anthracyclines doxorubicin (DOX) and daunorubicin (DAUN). Although widely used, cardiotoxicity continues to be a serious side effect that may be linked to metabolites or reactive intermediates generated in their metabolism. In this study we examine the little known effects of nonsynonymous single nucleotide polymorphisms of human AKR1A1 on the metabolism of these drugs to their alcohol metabolites. Expressed and purified from bacteria using affinity chromatography, the AKR1A1 protein with a single histidine (6x-His) tag exhibited the greatest activity using two test substrates: p-nitrobenzaldehyde (5.09 +/- 0.16 micromol/min/mg of purified protein) and DL-glyceraldehyde (1.24 +/- 0.17 micromol/min/mg). These activities are in agreement with published literature values of nontagged human AKR1A1. The 6x-His-tagged AKR1A1 wild type and allelic variants, E55D and N52S, were subsequently examined for metabolic activity using DAUN and DOX. The tagged variants showed significantly reduced activities (1.10 +/- 0.42 and 0.72 +/- 0.47 nmol of daunorubicinol (DAUNol) formed/min/mg of purified protein for E55D and N52S, respectively) compared with the wild type (2.34 +/- 0.71 nmol/min/mg). The wild type and E55D variant metabolized DOX to doxorubicinol (DOXol); however, the levels fell below the limit of quantitation (25 nM). The N52S variant yielded no detectable DOXol. A kinetic analysis of the DAUN reductase activities revealed that both amino acid substitutions lead to reduced substrate affinity, measured as significant increases in the measured K(m) for the reduction reaction by AKR1A1. Hence, it is possible that these allelic variants can act as genetic biomarkers for the clinical development of DAUN-induced cardiotoxicity.


Subject(s)
Aldehyde Reductase/metabolism , Antibiotics, Antineoplastic/metabolism , Daunorubicin/metabolism , Recombinant Proteins/metabolism , Aldehyde Reductase/genetics , Alleles , Biomarkers/metabolism , Doxorubicin/metabolism , Genetic Variation , Humans , Recombinant Proteins/genetics
9.
Genetics ; 162(4): 1763-74, 2002 Dec.
Article in English | MEDLINE | ID: mdl-12524347

ABSTRACT

Mutations in the gene for Su(var)3-9 are dominant suppressors of position-effect variegation (PEV). We show that SU(VAR)3-9 is a chromatin-associated protein and identify the large multicopy histone gene cluster (HIS-C) as one of its target loci. The organization of nucleosomes over the entire HIS-C region is altered in Su(var)3-9 mutants and there is a concomitant increase in expression of the histone genes. SU(VAR)3-9 is a histone H3 methyltransferase and, using chromatin immunoprecipitation, we show that SU(VAR)3-9 is present at the HIS-C locus and that the histone H3 at the HIS-C locus is methylated. We propose that SU(VAR)3-9 is involved in packaging HIS-C into a distinct chromatin domain that has some of the characteristics of beta-heterochromatin. We suggest that methylation of histone H3 is important for the chromatin structure at HIS-C. The chromosomal deficiency for the HIS-C is also a suppressor of PEV. In contrast to what might be expected, we show that hemizygosity for the HIS-C locus leads to a substantial increase in the histone transcripts.


Subject(s)
Chromatin/genetics , Drosophila Proteins/genetics , Drosophila/genetics , Histone-Lysine N-Methyltransferase , Histones/genetics , Methyltransferases/genetics , Repressor Proteins/genetics , Animals , Base Sequence , DNA/genetics , Drosophila/growth & development , Drosophila/metabolism , Female , Gene Expression Regulation, Developmental , Genes, Insect , Histone Methyltransferases , Male , Multigene Family , Mutation , Protein Methyltransferases , RNA, Messenger/genetics , RNA, Messenger/metabolism , Suppression, Genetic
10.
Pharmacogenetics ; 13(2): 107-18, 2003 Feb.
Article in English | MEDLINE | ID: mdl-12563180

ABSTRACT

OBJECTIVE: to determine if the agonist serotonin and antagonists loxapine and clozapine have an altered potency for four allelic variants (T25N, I197V, A447V, and H452Y) of the human 5HT2A receptor when compared to the wild-type allele. METHODS: The receptor or its variants are studied in an in-vitro functional assay system consisting of a Sf9 insect cell line that is stably transformed with the human wild-type and mutant alleles. This assay system measures release of calcium stores due to receptor activation by agonists and inhibition of this agonist stimulated response by antagonists. RESULTS: Both loxapine and clozapine exhibit non-competitive antagonism of serotonin stimulation of the human 5HT2A receptor signal transduction system and loxapine is the more potent inhibitor. This study shows that the I197V allele requires a two-fold higher concentration of the atypical neuroleptic clozapine to inhibit serotonin stimulation compared to the wild-type receptor (P = 0.036). The I197V mutation does not affect the inhibition of serotonin stimulation by the typical neuroleptic loxapine nor does it alter the activation of the receptor by serotonin. It is also significant that the results of this study indicate that the T25N, A447V, and H452Y mutations in the human 5HT2A receptor do not significantly alter the response of the receptor to the agonist serotonin or the antagonists loxapine and clozapine.


Subject(s)
Clozapine/therapeutic use , Genetic Variation/genetics , Polymorphism, Single Nucleotide/genetics , Receptors, Serotonin/genetics , Serotonin Antagonists/therapeutic use , Animals , Antipsychotic Agents/therapeutic use , Binding, Competitive , Blotting, Western , Cell Line , DNA Primers/chemistry , Free Radical Scavengers/therapeutic use , Humans , Loxapine/therapeutic use , Plasmids , Polymerase Chain Reaction , Receptor, Serotonin, 5-HT2A , Receptors, Serotonin/metabolism , Serotonin/therapeutic use , Spodoptera/metabolism , Transformation, Genetic
11.
Article in English | MEDLINE | ID: mdl-22818945

ABSTRACT

Androgens are key mediators of prostate development and function, a role that extends to the development of prostate diseases such as benign prostatic hyperplasia (BPH) and prostate cancer. In prostate, DHT is the major androgen and reduction and glucuronidation are the major metabolic pathways for DHT elimination. A streamlined method for quantitation of dihydrotestosterone (DHT), 5α-androstan-3α,17Ɵ-diol (3α-diol), and 3α-diol glucuronide (diol-gluc) was established and validated for use with archived prostate tissue specimens to facilitate examination of the roles of the underlying metabolism. This involved a sequential 70/30 hexane/ethyl acetate (hex/EtOAc) extraction of steroids, followed by an ethyl acetate extraction for diol-gluc. Derivatization of the hex/EtOAc fraction with2-fluoro-1-methylpyridinium p-toluene-4-sulfonate (FMP) was used to enhance sensitivity for hydroxyl steroids and liquid chromatography-tandem mass spectrometry (LC-MS/MS) was utilized for analysis of both fractions. The method was validated with calibration standards followed by recovery assessment from spiked samples of BPH and normal prostate. Lower limits of quantitation (LLOQ) were 50 pg/g, 20 pg/g and 100 pg/g for DHT, 3α-diol and diol-gluc, respectively for extracts from 50mg equivalents of tissue. Prepared samples were stable for up to three weeks at 4 Ā°C and 37 Ā°C. The method provides excellent sensitivity and selectivity for determination of tissue levels of DHT, 3α-diol, and diol-gluc. Furthermore, this protocol can easily be extended to other hydroxyl steroids, is relatively straightforward to perform and is an effective tool for assessing steroid levels in archived clinical prostate samples.


Subject(s)
Androstane-3,17-diol/analogs & derivatives , Chromatography, Liquid/methods , Dihydrotestosterone/analysis , Prostate/chemistry , Tandem Mass Spectrometry/methods , Androstane-3,17-diol/analysis , Androstane-3,17-diol/chemistry , Benzenesulfonates/chemistry , Drug Stability , Humans , Male , Prostatic Hyperplasia/metabolism , Reproducibility of Results , Sensitivity and Specificity
12.
PLoS One ; 6(4): e19247, 2011 Apr 29.
Article in English | MEDLINE | ID: mdl-21559420

ABSTRACT

One of the major challenges in management of spinal cord injury (SCI) is that the assessment of injury severity is often imprecise. Identification of reliable, easily quantifiable biomarkers that delineate the severity of the initial injury and that have prognostic value for the degree of functional recovery would significantly aid the clinician in the choice of potential treatments. To find such biomarkers we performed quantitative liquid chromatography-mass spectrometry (LC-MS/MS) analyses of cerebrospinal fluid (CSF) collected from rats 24 h after either a moderate or severe SCI. We identified a panel of 42 putative biomarkers of SCI, 10 of which represent potential biomarkers of SCI severity. Three of the candidate biomarkers, Ywhaz, Itih4, and Gpx3 were also validated by Western blot in a biological replicate of the injury. The putative biomarkers identified in this study may potentially be a valuable tool in the assessment of the extent of spinal cord damage.


Subject(s)
Biomarkers/cerebrospinal fluid , Spinal Cord Injuries/cerebrospinal fluid , Spinal Cord Injuries/diagnosis , Animals , Biomarkers/metabolism , Blotting, Western , Chromatography, Liquid/methods , Male , Mass Spectrometry/methods , Peptides/chemistry , Prognosis , Proteomics/methods , Rats , Rats, Sprague-Dawley , Spinal Cord/pathology , Time Factors
13.
ACS Chem Biol ; 4(2): 139-44, 2009 Feb 20.
Article in English | MEDLINE | ID: mdl-19175306

ABSTRACT

A marine natural product extract library has been screened with a functional cell-based G-protein coupled receptor assay to find compounds capable of binding the human cannabinoid receptors CB1 and CB2. The methanol extract of the marine sponge Dasychalina fragilis collected in Papua New Guinea was active in the assay. Bioassay-guided fractionation of the extract identified the phosphorylated sterol sulfate haplosamate A (1) as a cannabinoid receptor agonist. The high water solubility of haplosamate A (1) allowed exploration of its binding interactions with the human cannabinoid receptors in whole insect cells by means of saturation transfer double-difference NMR spectroscopy. This technique confirmed that haplosamate A (1) binds selectively to these receptors.


Subject(s)
Porifera/chemistry , Receptor, Cannabinoid, CB1/agonists , Receptor, Cannabinoid, CB2/agonists , Sterols , Animals , Binding, Competitive , Biological Assay , Cell Line, Transformed , Humans , Insecta , Magnetic Resonance Spectroscopy , Papua New Guinea , Sterols/chemistry , Sterols/isolation & purification , Tissue Extracts
14.
PLoS One ; 3(12): e3864, 2008.
Article in English | MEDLINE | ID: mdl-19057646

ABSTRACT

Eukaryotic chromosomes terminate in telomeres, complex nucleoprotein structures that are required for chromosome integrity that are implicated in cellular senescence and cancer. The chromatin at the telomere is unique with characteristics of both heterochromatin and euchromatin. The end of the chromosome is capped by a structure that protects the end and is required for maintaining proper chromosome length. Immediately proximal to the cap are the telomere associated satellite-like (TAS) sequences. Genes inserted into the TAS sequences are silenced indicating the chromatin environment is incompatible with transcription. This silencing phenomenon is called telomeric position effect (TPE). Two other silencing mechanisms have been identified in eukaryotes, suppressors position effect variegation [Su(var)s, greater than 30 members] and Polycomb group proteins (PcG, approximately 15 members). We tested a large number of each group for their ability to suppress TPE [Su(TPE)]. Our results showed that only three Su(var)s and only one PcG member are involved in TPE, suggesting silencing in the TAS sequences occurs via a novel silencing mechanism. Since, prior to this study, only five genes have been identified that are Su(TPE)s, we conducted a candidate screen for Su(TPE) in Drosophila by testing point mutations in, and deficiencies for, proteins involved in chromatin metabolism. Screening with point mutations identified seven new Su(TPE)s and the deficiencies identified 19 regions of the Drosophila genome that harbor suppressor mutations. Chromatin immunoprecipitation experiments on a subset of the new Su(TPE)s confirm they act directly on the gene inserted into the telomere. Since the Su(TPE)s do not overlap significantly with either PcGs or Su(var)s, and the candidates were selected because they are involved generally in chromatin metabolism and act at a wide variety of sites within the genome, we propose that the Su(TPE) represent a third, widely used, silencing mechanism in the eukaryotic genome.


Subject(s)
Chromosomal Position Effects/genetics , Drosophila/genetics , Gene Silencing , Telomere/metabolism , Animals , Centromere , Chromatin Immunoprecipitation , Drosophila/metabolism , Genome, Insect , Point Mutation , Polycomb-Group Proteins , Repressor Proteins/genetics , Repressor Proteins/metabolism , Suppression, Genetic , Telomere/genetics
15.
Mol Cell Proteomics ; 6(9): 1574-88, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17510048

ABSTRACT

Translational research is progressing toward combined genomics and proteomics analyses of small and precious samples. In our analyses of spinal cord material, we systematically evaluated disruption and extraction techniques to determine an optimum process for the coupled analysis of RNA and protein from a single 5-mm segment of tissue. Analyses of these distinct molecular species were performed using microarrays and high resolution two-dimensional gels, respectively. Comparison of standard homogenization with automated frozen disruption (AFD) identified negligible differences in the relative abundance of genes (44) with all genes identified by either process. Analysis on either the Affymetrix or Applied Biosystems Inc. gene array platforms provided good correlations between the extraction techniques. In contrast, the AFD technique enabled identification of more unique proteins from spinal cord tissue than did standard homogenization. Furthermore use of an optimized CHAPS/urea extraction provided better protein recovery, as shown by quantitative two-dimensional gel analyses, than did solvent precipitation during TRIzol-based RNA extraction. Thus, AFD of tissue samples followed by protein and RNA isolation from separate aliquots of the frozen powdered sample is the most effective route to ensure full, quantitative analyses of both molecular entities.


Subject(s)
Genomics/methods , Proteomics/methods , Spinal Cord/metabolism , Animals , Automation , Electrophoresis, Gel, Two-Dimensional , Guanidines/pharmacology , Male , Models, Biological , Oligonucleotide Array Sequence Analysis , Phenols/pharmacology , Protein Biosynthesis , Proteome , RNA/chemistry , Rats , Rats, Sprague-Dawley
16.
Mol Genet Genomics ; 275(6): 513-26, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16622709

ABSTRACT

Organization of chromatin structure and regulation of gene transcription are contingent on histone tail modifications. Regions of the genome packaged with nucleosomes that contain methyl histone H3 at lysine 9 (Me K9H3) strongly correlate with regions that are silenced for transcription. To date Su(var)3-9 is the only K9H3 specific enzyme characterized in Drosophila melanogaster. In this study, we describe the identification of three additional Drosophila genes that potentially encode K9H3 specific methyltransferases (HMTase) with homology to known mammalian proteins. By several criteria, including sequence alignments, phylogenic analyses, and enzyme activity of the protein, one of these is a homologue of the human G9a and hence, we name it dG9a. dG9a catalyzes the transfer of methyl groups to full-length histone H3 and to N-terminal H3 peptides that contain lysine 9, suggesting that the major target for dG9a is K9H3. Chromatin extracts prepared from a P-element insert mutation in dG9a display an altered K9H3 methylation profile. In addition, the dG9a mutant is a dominant suppressor of position-effect variegation (PEV), a heterochromatin-associated gene silencing phenomenon. Su(var)3-9 also suppresses PEV. The combined Su(var)3-9 and dG9a mutations have severe developmental defects suggesting an overlapping role for dG9a and Su(var)3-9 in the packaging of heterochromatin and gene silencing via a K9H3 methylation pathway.


Subject(s)
Drosophila melanogaster/enzymology , Gene Silencing , Histone-Lysine N-Methyltransferase/genetics , Amino Acid Sequence , Animals , Base Sequence , Blotting, Western , DNA Primers , Histone Methyltransferases , Histone-Lysine N-Methyltransferase/chemistry , Humans , Molecular Sequence Data , Protein Methyltransferases , Sequence Homology, Amino Acid
17.
Biochem Cell Biol ; 84(2): 148-56, 2006 Apr.
Article in English | MEDLINE | ID: mdl-16609695

ABSTRACT

The lysosomal hydrolase, glucocerebrosidase (GBA), catalyses the penultimate step in the breakdown of membrane glycosphingolipids. An inherited deficiency of this enzyme activity leads to the onset of Gaucher disease, the most common lysosomal storage disorder. Affected individuals range from adults with hepatosplenomegaly, haematological complications, and bone pain (type 1 disease) to children and neonates with severe neuronopathy leading to neurological degradation and premature death (type 2 and type 3 disease). Enzyme replacement therapy has become the standard of treatment for type I Gaucher disease but remains an expensive option, in part because of the cost of recombinant enzyme production using mammalian cell culture. Using a nonlytic integrative plasmid expression system, we have successfully produced active human GBA in stable transformed Sf9 (Spodoptera frugiperda) cells. Both the 39 and 19 amino acid native GBA signal sequences were capable of endoplasmic reticulum targeting, which led to secretion of the recombinant protein, although approximately 30% more enzyme was produced using the longer signal sequence. The secreted product was purified to apparent electrophoretic homogeneity using hydrophobic interaction chromatography and found to be produced in a fully glycosylated and a hypoglycosylated form, both of which cross-reacted with a human GBA-specific monoclonal antibody. The pH optimum (at pH 5.5) for activity of the recombinant enzyme was as expected for human GBA using the artificial substrate 4-methyl-umbelliferyl-beta-D-glycopyranoside. With initial nonoptimized expression levels estimated at 10-15 mg/L using small-scale batch cultures, stable transformed insect cells could provide a viable alternative system for the heterologous production of human GBA when grown under optimized perfusion culture conditions.


Subject(s)
Glucosylceramidase/biosynthesis , Animals , Base Sequence , Cell Line , DNA, Complementary/genetics , Gaucher Disease/drug therapy , Gaucher Disease/enzymology , Gaucher Disease/genetics , Glucosylceramidase/analysis , Glucosylceramidase/genetics , Humans , Hydrogen-Ion Concentration , In Vitro Techniques , Protein Sorting Signals/genetics , Recombinant Proteins/analysis , Recombinant Proteins/biosynthesis , Recombinant Proteins/genetics , Spodoptera , Transformation, Genetic
18.
J Recept Signal Transduct Res ; 24(4): 241-56, 2004.
Article in English | MEDLINE | ID: mdl-15648445

ABSTRACT

We previously described a functional assay for G protein-coupled receptors (GPCRs) based on stably transformed insect cells and using the promiscuous G protein Galpha16. We now show that, compared with Galpha16, the use of chimeric Galphaq subunits with C-terminal modifications (qi5-HA, qo5-HA, or qz5-HA) significantly enhances the ability of insect cells to redirect Gi-coupled GPCRs into a Gq-type signal transduction pathway. We coexpressed human Gi-coupled GPCRs, G protein alpha subunits (either a chimeric Galphaq or Galpha16), and the calcium-sensitive reporter protein aequorin in Sf9 cells using a nonlytic protein expression system, and measured agonist-induced intracellular calcium flux using a luminometer. Three of the GPCRs (serotonin 1A, 1D, and dopamine D2) were functionally redirected into a Gq-type pathway when coexpressed with the chimeric G proteins, compared with only one (serotonin 1A) with Galpha16. We determined agonist concentration-response relationships for all three receptors, which yielded EC50 values comparable with those achieved in mammalian cell-based assay systems. However, three other Gi-coupled GPCRs (the opioid kappa1 and delta1 receptors, and serotonin 1E) were not coupled to calcium flux by either the G protein chimeras or Galpha16. Possible reasons and solutions for this result are discussed.


Subject(s)
Biochemistry/methods , Cell Culture Techniques/methods , Receptors, G-Protein-Coupled/physiology , Signal Transduction , Animals , Cell Line , Culture Media, Serum-Free/pharmacology , DNA, Complementary/metabolism , Dose-Response Relationship, Drug , Genes, Reporter , Humans , Imidazoles/pharmacology , Insecta , Pyrazines/pharmacology , Recombinant Fusion Proteins/chemistry , Transfection , Type C Phospholipases/chemistry
19.
Arch Insect Biochem Physiol ; 57(3): 142-50, 2004 Nov.
Article in English | MEDLINE | ID: mdl-15484257

ABSTRACT

The aim of this work was to sample the diversity of G protein alpha subunits in lepidopteran insect cell lines. Here we report the amplification by degenerate PCR of partial sequences representing six G protein alpha subunits from three different lepidopteran insect cell lines. Sequence comparisons with known G protein alpha subunits indicate that the Sf9, Ld and High Five cell lines each contain (at least) one Galpha(q)-like and one Galpha(i)-like Galpha subunit. All six PCR products are unique at the nucleotide level, but the translation products of the three Galpha q-like partial clones (Sf9-Galpha 1, Ld-Galpha 1, and Hi5-Galpha 1) are identical, as are the translation products of the three Galpha i-like partial clones (Sf9-Galpha 2, Ld-Galpha 2, and Hi5-Galpha 2). Both the Galpha(q)-like and Galpha(i)-like translation products are identical to known Galpha subunits from other Lepidoptera, are highly similar (88-98%) to Galpha subunits from other invertebrates including mosquitoes, fruit flies, lobsters, crabs, and snails, and are also highly similar (88-90%) to known mammalian Galpha subunits. Identification of G protein alpha subunits in lepidopteran cell lines will assist in host cell line selection when insect cell lines are used for the pharmacological analysis of human GPCRs.


Subject(s)
GTP-Binding Protein alpha Subunits/genetics , Genetic Variation , Moths/genetics , Amino Acid Sequence , Animals , Base Sequence , Cell Line , Cloning, Molecular , Cluster Analysis , DNA Primers , DNA, Complementary/genetics , GTP-Binding Protein alpha Subunits/metabolism , Molecular Sequence Data , Sequence Alignment , Sequence Analysis, DNA
20.
Chromosome Res ; 11(6): 573-83, 2003.
Article in English | MEDLINE | ID: mdl-14516066

ABSTRACT

The E(var) 63AP mutation of Drosophila melanogaster was isolated in a genetic screen for P-element induced enhancers of wm4 variegation. Remobilization of the P-element in E(var)63AP resulted in a loss of its ability to enhance position-effect variegation (PEV) of wm4, indicating that the P-element in this mutant resulted in the E(var) phenotype. An allele of E(var)63AP, Su(var)63ALTR was isolated following mobilization of the P-element. Su(var)63ALTR was demonstrated to suppress PEV associated with the variegating rearrangements wm4 and bwVDe2. The P-element insert in E(var)63AP was located in the cytogenetic region 63A by in-situ hybridization and was shown to be inserted into the 3'LTR of a copy of the nomad retroelement. Two additional P-element containing lines were identified that also contained P-inserts into copies of the nomad element and were Su(var)s. The level of nomad transcription in the E(var)63AP and Su(var)63ALTR mutations was shown to correlate with their effect on PEV, suggesting that the nomad element may be directly involved in the regulation of chromatin structure. Several models to explain the effect of mutations in the nomad element on PEV and retroelement expression are presented.


Subject(s)
Drosophila melanogaster/genetics , Gene Order/genetics , Heterochromatin/genetics , Retroelements/genetics , Animals , Blotting, Northern , Chromosome Mapping , Crosses, Genetic , Gene Components , In Situ Hybridization , Mutation/genetics , Pigments, Biological/genetics , Suppression, Genetic/genetics
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