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1.

Molecular characterization and antimicrobial susceptibility of Corynebacterium pseudotuberculosis isolated from skin abscesses of native Korean goats (Capra hircus coreanae).

Pathirana, Hansani Nilupama Kumari Senarath; Cho, Ho-Seong; Cho, Yong-Il; Kim, Chan-Lan; Wimalasena, Sudu Hakuruge Madusha Pramud; Rajapaksha, Lansakara Gedara Thilini Ganga; Gunasekara, Chathura Wikumpriya Rusiri; Kim, Chong-Han; Seo, Byoung-Joo; Moon, Sung-Hyun; Park, Jin-Ho; Shin, Gee-Wook.

J Appl Microbiol ; 133(3): 2074-2082, 2022 Sep.

Article in English | MEDLINE | ID: mdl-35737750

2.

Perfluorooctanoic acid (PFOA) or perfluorooctane sulfonate (PFOS) and DNA methylation in newborn dried blood spots in the Upstate KIDS cohort.

Robinson, Sonia L; Zeng, Xuehuo; Guan, Weihua; Sundaram, Rajeshwari; Mendola, Pauline; Putnick, Diane L; Waterland, Robert A; Gunasekara, Chathura J; Kannan, Kurunthachalam; Gao, Chongjing; Bell, Erin M; Yeung, Edwina H.

Environ Res ; 194: 110668, 2021 03.

Article in English | MEDLINE | ID: mdl-33387539

3.

Co-expression analysis aids in the identification of genes in the cuticular wax pathway in maize.

Zheng, Jun; He, Cheng; Qin, Yang; Lin, Guifang; Park, Woojun D; Sun, Minghao; Li, Jian; Lu, Xiaoduo; Zhang, Chunyi; Yeh, Cheng-Ting; Gunasekara, Chathura J; Zeng, Erliang; Wei, Hairong; Schnable, Patrick S; Wang, Guoying; Liu, Sanzhen.

Plant J ; 97(3): 530-542, 2019 02.

Article in English | MEDLINE | ID: mdl-30375131

4.

TGMI: an efficient algorithm for identifying pathway regulators through evaluation of triple-gene mutual interaction.

Gunasekara, Chathura; Zhang, Kui; Deng, Wenping; Brown, Laura; Wei, Hairong.

Nucleic Acids Res ; 46(11): e67, 2018 06 20.

Article in English | MEDLINE | ID: mdl-29579312

5.

Bottom-up GGM algorithm for constructing multilayered hierarchical gene regulatory networks that govern biological pathways or processes.

Kumari, Sapna; Deng, Wenping; Gunasekara, Chathura; Chiang, Vincent; Chen, Huann-Sheng; Ma, Hao; Davis, Xin; Wei, Hairong.

BMC Bioinformatics ; 17: 132, 2016 Mar 18.

Article in English | MEDLINE | ID: mdl-26993098

6.

Epigenetic Modulations for Prevention of Infectious Diseases in Shrimp Aquaculture.

Wikumpriya, Gunasekara Chathura; Prabhatha, Madhuranga Walawedurage Srinith; Lee, Jiye; Kim, Chan-Hee.

Genes (Basel) ; 14(9)2023 08 25.

Article in English | MEDLINE | ID: mdl-37761822

7.

Systemic interindividual epigenetic variation in humans is associated with transposable elements and under strong genetic control.

Gunasekara, Chathura J; MacKay, Harry; Scott, C Anthony; Li, Shaobo; Laritsky, Eleonora; Baker, Maria S; Grimm, Sandra L; Jun, Goo; Li, Yumei; Chen, Rui; Wiemels, Joseph L; Coarfa, Cristian; Waterland, Robert A.

Genome Biol ; 24(1): 2, 2023 01 12.

Article in English | MEDLINE | ID: mdl-36631879

8.

Sex-specific epigenetic development in the mouse hypothalamic arcuate nucleus pinpoints human genomic regions associated with body mass index.

MacKay, Harry; Gunasekara, Chathura J; Yam, Kit-Yi; Srisai, Dollada; Yalamanchili, Hari Krishna; Li, Yumei; Chen, Rui; Coarfa, Cristian; Waterland, Robert A.

Sci Adv ; 8(39): eabo3991, 2022 09 30.

Article in English | MEDLINE | ID: mdl-36170368

9.

Identification of biological pathway and process regulators using sparse partial least squares and triple-gene mutual interaction.

Hong, Junyan; Gunasekara, Chathura; He, Cheng; Liu, Sanzhen; Huang, Jianqin; Wei, Hairong.

Sci Rep ; 11(1): 13174, 2021 06 23.

Article in English | MEDLINE | ID: mdl-34162988

10.

A machine learning case-control classifier for schizophrenia based on DNA methylation in blood.

Gunasekara, Chathura J; Hannon, Eilis; MacKay, Harry; Coarfa, Cristian; McQuillin, Andrew; Clair, David St; Mill, Jonathan; Waterland, Robert A.

Transl Psychiatry ; 11(1): 412, 2021 08 03.

Article in English | MEDLINE | ID: mdl-34341337

11.

DNA methylation at a nutritionally sensitive region of the PAX8 gene is associated with thyroid volume and function in Gambian children.

Candler, Toby; Kessler, Noah J; Gunasekara, Chathura J; Ward, Kate A; James, Philip; Laritsky, Eleonora; Baker, Maria S; Dyer, Roger; Elango, Rajavel; Jeffries, David; Waterland, Robert A; Moore, Sophie E; Ludgate, Marian; Prentice, Andrew M; Silver, Matt J.

Sci Adv ; 7(45): eabj1561, 2021 Nov 05.

Article in English | MEDLINE | ID: mdl-34739318

12.

Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing data.

Scott, C Anthony; Duryea, Jack D; MacKay, Harry; Baker, Maria S; Laritsky, Eleonora; Gunasekara, Chathura J; Coarfa, Cristian; Waterland, Robert A.

Genome Biol ; 21(1): 156, 2020 07 01.

Article in English | MEDLINE | ID: mdl-32605651

13.

A genomic atlas of systemic interindividual epigenetic variation in humans.

Gunasekara, Chathura J; Scott, C Anthony; Laritsky, Eleonora; Baker, Maria S; MacKay, Harry; Duryea, Jack D; Kessler, Noah J; Hellenthal, Garrett; Wood, Alexis C; Hodges, Kelly R; Gandhi, Manisha; Hair, Amy B; Silver, Matt J; Moore, Sophie E; Prentice, Andrew M; Li, Yumei; Chen, Rui; Coarfa, Cristian; Waterland, Robert A.

Genome Biol ; 20(1): 105, 2019 06 03.

Article in English | MEDLINE | ID: mdl-31155008

14.

A Resource for Inactivation of MicroRNAs Using Short Tandem Target Mimic Technology in Model and Crop Plants.

Peng, Ting; Qiao, Mengmeng; Liu, Haiping; Teotia, Sachin; Zhang, Zhanhui; Zhao, Yafan; Wang, Bobo; Zhao, Dongjie; Shi, Lina; Zhang, Cui; Le, Brandon; Rogers, Kestrel; Gunasekara, Chathura; Duan, Haitang; Gu, Yiyou; Tian, Lei; Nie, Jinfu; Qi, Jian; Meng, Fanrong; Huang, Lan; Chen, Qinghui; Wang, Zhenlin; Tang, Jinshan; Tang, Xiaoqing; Lan, Ting; Chen, Xuemei; Wei, Hairong; Zhao, Quanzhi; Tang, Guiliang.

Mol Plant ; 11(11): 1400-1417, 2018 11 05.

Article in English | MEDLINE | ID: mdl-30243763

15.

ExactSearch: a web-based plant motif search tool.

Gunasekara, Chathura; Subramanian, Avinash; Avvari, Janaki Venkata Ram Kumar; Li, Bin; Chen, Su; Wei, Hairong.

Plant Methods ; 12: 26, 2016.

Article in English | MEDLINE | ID: mdl-27134638

16.

A new era for epigenetic epidemiology.

Gunasekara, Chathura J; Waterland, Robert A.

Epigenomics ; 11(15): 1647-1649, 2019 11 01.

Article in English | MEDLINE | ID: mdl-31729252

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