ABSTRACT
Hydrogen is a promising alternative as an energetic carrier and its production by dark fermentation from wastewater has been recently proposed, with special attention to crude glycerol as potential substrate. In this study, two different feeding strategies were evaluated for replacing the glucose substrate by glycerol substrate: a one-step strategy (glucose was replaced abruptly by glycerol) and a step-by-step strategy (progressive decrease of glucose concentration and increase of glycerol concentration from 0 to 5 g L(-1)), in a continuous stirred tank reactor (12 h of hydraulic retention time (HRT), pH 5.5, 35 °C). While the one-step strategy led to biomass washout and unsuccessful H2 production, the step-by-step strategy was efficient for biomass adaptation, reaching acceptable hydrogen yields (0.4 ± 0.1 molH2 mol(-1) glycerol consumed) around 33 % of the theoretical yield independently of the glycerol concentration. Microbial community structure was investigated by single-strand conformation polymorphism (SSCP) and denaturing gradient gel electrophoresis (DGGE) fingerprinting techniques, targeting either the total community (16S ribosomal RNA (rRNA) gene) or the functional Clostridium population involved in H2 production (hydA gene), as well as by 454 pyrosequencing of the total community. Multivariate analysis of fingerprinting and pyrosequencing results revealed the influence of the feeding strategy on the bacterial community structure and suggested the progressive structural adaptation of the community to increasing glycerol concentrations, through the emergence and selection of specific species, highly correlated to environmental parameters. Particularly, this work highlighted an interesting shift of dominant community members (putatively responsible of hydrogen production in the continuous stirred tank reactor (CSTR)) according to the gradient of glycerol proportion in the feed, from the family Veillonellaceae to the genera Prevotella and Clostridium sp., putatively responsible of hydrogen production in the CSTR.
Subject(s)
Bacteria/metabolism , Glycerol/metabolism , Hydrogen/metabolism , Sewage/microbiology , Acids/metabolism , Bacteria/classification , Bacteria/genetics , Bacteria/isolation & purification , Bioreactors/microbiology , Fermentation , Glycerol/analysis , Molecular Sequence Data , Phylogeny , Sewage/chemistryABSTRACT
The potential for total nitrogen removal from municipal wastewater has been evaluated in an autotrophic membrane bioreactor running with a low chemical oxygen demand (COD)/N ratio to simulate its combination with an upstream physicochemical process that retains a large proportion of organic matter. The tests were conducted in a laboratory scale submerged membrane bioreactor loaded with a synthetic influent. Nitrogen loading rate was 0.16 kgN-NH4+.m(-3).d(-1) and sodium acetate was added as a carbon source. Results have shown that nitrogen elimination can reach 85% for a COD/N ratio of 5, with COD removal exceeding 97%. However, a COD/N ratio of 3.5 was found to be the limiting factor for successfully reaching the overall target value of 10 mgN.L(-1) in the effluent. Nevertheless, low COD/N ratios make it possible to work with low total suspended solid concentrations in the bioreactor, which greatly facilitates membrane fouling control by a simple aeration and backwashing strategy.
Subject(s)
Biological Oxygen Demand Analysis , Bioreactors , Nitrogen/isolation & purification , Water Purification , Autotrophic Processes , Bioreactors/microbiology , Denitrification , Membranes, Artificial , Models, Theoretical , NitrificationABSTRACT
To investigate the effect of wastewater (WW) treatment on soil bacterial communities, water of different quality was used to irrigate eight lettuces per tank: raw municipal wastewater (RWW), WW treated with an aerated constructed wetland (CWW) and WW treated with a membrane bioreactor (MBW), and tap water (TW). The physicochemical and microbiological characteristics (quality indicators) of these water types were characterized, and the water and soil bacterial communities were monitored by quantitative PCR (qPCR) and 16S rRNA gene sequencing. Despite marked differences in microbial load and diversity of waters, soil communities remained remarkably stable after irrigation. Microbial biomass was increased only in soils irrigated with RWW. At the end of the irrigation period (day 84), soil and water shared a large fraction of their bacterial communities, from 43 % to 70 %, depending on the water quality, indicating a transfer of bacterial communities from water to soil. Overall, the relative abundance of Proteobacteria and Acidobacteria was increased and that of Actinobacteria was decreased in soils irrigated with MBW, CWW and even more with RWW. Multivariate ordination clearly separated soils in three groups: soils irrigated with the cleanest water (TW), with treated WW (MBW and CWW), and with untreated WW (RWW). Nitrifying, denitrifying, and nitrogen-fixing bacteria were quantified by qPCR targeting amoA, narG, and nifH, respectively. Nitrifying bacteria were the most affected by the water quality, as indicated by amoA copy number increase in RWW-irrigated soil and decrease in CWW-irrigated soil. Overall, the abundance of all three genes was positively influenced by RWW treatment. In conclusion, the 84 days of irrigation influenced the soil microbial communities, and the impact depended on the quality of the used water.
ABSTRACT
We study the dynamics of interactions between a traditional medium, the New York Times journal, and its followers in Twitter, using a massive dataset. It consists of the metadata of the articles published by the journal during the first year of the COVID-19 pandemic, and the posts published in Twitter by a large set of followers of the @nytimes account along with those published by a set of followers of several other media of different kind. The dynamics of discussions held in Twitter by exclusive followers of a medium show a strong dependence on the medium they follow: the followers of @FoxNews show the highest similarity to each other and a strong differentiation of interests with the general group. Our results also reveal the difference in the attention payed to U.S. presidential elections by the journal and by its followers, and show that the topic related to the "Black Lives Matter" movement started in Twitter, and was addressed later by the journal.
Subject(s)
Communication , Newspapers as Topic , Social Media , Humans , MetadataABSTRACT
BACKGROUND: People with intellectual disabilities (ID) have unequal access to health care. While systemic efforts are addressing health inequalities, there remains a need to demonstrate that persons with ID can increase their health self-advocacy skills. METHOD: A randomised control design with up to 6-month follow-up was used to evaluate the 3Rs (Rights, Respect and Responsibility) health self-advocacy training program for persons with ID (n = 31). Training involved teaching participants to recognise and redress health rights violations in the context of respect and responsibility. Training materials included PowerPoint slides and interactive video scenarios illustrating health rights, respect and responsibility problem and non-problems. Two-hour training sessions were conducted twice a week in a group format where participants played a game and answered questions. RESULTS: The health rights training group made significantly more correct responses on post training and follow-up tests than the control group. Training effects generalised to untrained scenarios and in situ health interviews. CONCLUSIONS: The results of this study suggest that persons with ID can learn complex skills related to health self-advocacy. More research is needed to improve in situ generalisation.
Subject(s)
Disabled Persons/psychology , Education of Intellectually Disabled/methods , Intellectual Disability/psychology , Patient Education as Topic/methods , Personal Autonomy , Adult , Disabled Persons/rehabilitation , Female , Follow-Up Studies , Human Rights/psychology , Humans , Intellectual Disability/rehabilitation , Male , Middle Aged , Program Evaluation , Self Care/methods , Self Care/psychology , Surveys and QuestionnairesABSTRACT
Increased phosphorylation of myosin light chain (MLC) is necessary for the dynamic membrane blebbing that is observed at the onset of apoptosis. Here we identify ROCK I, an effector of the small GTPase Rho, as a new substrate for caspases. ROCK I is cleaved by caspase-3 at a conserved DETD1113/G sequence and its carboxy-terminal inhibitory domain is removed, resulting in deregulated and constitutive kinase activity. ROCK proteins are known to regulate MLC-phosphorylation, and apoptotic cells exhibit a gradual increase in levels of phosphorylated MLC concomitant with ROCK I cleavage. This phosphorylation, as well as membrane blebbing, is abrogated by inhibition of caspases or ROCK proteins, but both processes are independent of Rho activity. We also show that expression of active truncated ROCK I induces cell blebbing. Thus, activation of ROCK I by caspase-3 seems to be responsible for bleb formation in apoptotic cells.
Subject(s)
Apoptosis , Caspases/metabolism , Myosin Light Chains/metabolism , Protein Serine-Threonine Kinases/metabolism , Binding Sites , Caspase 3 , Cell Membrane/pathology , Humans , Intracellular Signaling Peptides and Proteins , Jurkat Cells , Phosphorylation , Protein Serine-Threonine Kinases/genetics , U937 Cells , rho-Associated Kinases , rhoA GTP-Binding Protein/metabolismABSTRACT
AIMS: Improved knowledge of the bacterial community of the digestive tract is required to enhance the efficiency of digestion in herbivores. This work aimed to study spatial and temporal variations of the bacterial communities in the bovine digestive tract and their correlation with gut environmental parameters. METHODS AND RESULTS: Rumen content and faeces of five cows were sampled for 3 weeks. In addition, reticulum content was sampled during the third week. Bacterial communities were assessed by studying capillary electrophoresis single-stranded conformation polymorphism (CE-SSCP) profiles of 16S rRNA genes. The bacterial community structure differed between the forestomach and faecal contents. The abundance of several operational taxonomic units changed from week to week. Bacterial community structure of the rumen was correlated to propionic acid and NH(3)-N concentrations. CONCLUSIONS: The bacterial community of the bovine digestive tract varied in space and time. SIGNIFICANCE AND IMPACT OF THE STUDY: The study of the bacterial communities of the digestive tract in herbivores should be widened from the rumen to the large intestine. The amplitude and origin of the temporal variation of the ruminal bacterial community need to be better understood to improve the control of the fermentative activity in herbivores.
Subject(s)
Bacteria/genetics , Bacteria/isolation & purification , Cattle/microbiology , Gastrointestinal Tract/microbiology , RNA, Ribosomal, 16S/analysis , Animals , Benzene Derivatives/analysis , Biodiversity , DNA, Bacterial/analysis , Electrophoresis, Capillary , Feces/microbiology , Polymerase Chain Reaction/methods , Polymorphism, Single-Stranded Conformational , Propionates/analysis , Reticulum/microbiology , Rumen/chemistry , Rumen/microbiologyABSTRACT
AIMS: To evaluate bacterial community structure and dynamics in triplicate vermicomposts made from the same start-up material, along with certain physico-chemical changes. METHODS AND RESULTS: The physico-chemical parameters (pH, temperature, carbon, nitrogen, soluble substances and cellulose) evolved similarly in the triplicate vermicomposts, indicating a steady function. The 16S bacterial gene abundance remained constant over time. To monitor changes in the bacterial community structure, fingerprinting based on capillary electrophoresis single-strand conformation polymorphism was employed. A rise in bacterial diversity occurred after precomposting and it remained stable during the maturation phase. However, a rapid shift in the structure of the bacterial community in the vermicompost replicates was noted at the beginning that stabilized with the process maturation. Multivariate analyses showed different patterns of bacterial community evolution in each vermicompost that did not correlate with the physico-chemical changes. CONCLUSIONS: The broad-scale functions remained similar in the triplicates, with stable bacterial abundance and diversity despite fluctuation in the community structure. SIGNIFICANCE AND IMPACT OF THE STUDY: This study has demonstrated that microbial fingerprinting with multivariate analysis can provide significant understanding of community structure and also clearly suggests that an ecosystem's efficacy could be the outcome of functional redundancy whereby a number of species carry out the same function.
Subject(s)
Bacteria/genetics , Ecosystem , RNA, Ribosomal, 16S/analysis , Soil Microbiology , Soil/analysis , Animals , DNA, Bacterial/analysis , Electrophoresis, Capillary , Multivariate Analysis , Polymerase Chain Reaction/methods , Polymorphism, Single-Stranded ConformationalABSTRACT
We address the problem of recollisions in cooling granular gases. To this aim, we dynamically construct the interaction network in a granular gas, using the sequence of collisions collected in an event driven simulation of inelastic hard disks from time 0 until time t . The network is decomposed into its k -core structure: particles in a core of index k have collided at least k times with other particles in the same core. The difference between cores k+1 and k is the so-called k -shell, and the set of all shells is a complete and nonoverlapping decomposition of the system. Because of energy dissipation, the gas cools down: its initial spatially homogeneous dynamics, characterized by the Haff law, i.e., a t{-2} energy decay, is unstable toward a strongly inhomogeneous phase with clusters and vortices, where energy decays as t{-1} . The clear transition between those two phases appears in the evolution of the k -shells structure in the collision network. In the homogeneous state the k -shell structure evolves as in a growing network with a fixed number of vertices and randomly added links: the shell distribution is strongly peaked around the most populated shell, which has an index k{max} approximately 0.9(d) with (d) the average number of collisions experienced by a particle. During the final nonhomogeneous state a growing fraction of collisions is concentrated in small, almost closed, communities of particles: k{max} is no more linear in (d) and the distribution of shells becomes extremely large developing a power-law tail approximately k{-3} for high shell indexes. We conclude proposing a simple algorithm to build a correlated random network that reproduces, with few essential ingredients, the whole observed phenomenology, including the t{-1} energy decay. It consists of two kinds of collisions (links): single random collisions with any other particle and long chains of recollisions with only previously encountered particles. The algorithm disregards the exact spatial arrangement of clusters, suggesting that the observed stringlike structures are not essential to determine the statistics of recollisions and the energy decay.
ABSTRACT
A quantitative structure activity relationship (QSAR) between relative abundance values and digester methane production rate was developed. For this, 50 triplicate anaerobic digester sets (150 total digesters) were each seeded with different methanogenic biomass samples obtained from full-scale, engineered methanogenic systems. Although all digesters were operated identically for at least 5 solids retention times (SRTs), their quasi steady-state function varied significantly, with average daily methane production rates ranging from 0.09 ± 0.004 to 1 ± 0.05 L-CH4/LR-day (LR = Liter of reactor volume) (average ± standard deviation). Digester microbial community structure was analyzed using more than 4.1 million partial 16S rRNA gene sequences of Archaea and Bacteria. At the genus level, 1300 operational taxonomic units (OTUs) were observed across all digesters, whereas each digester contained 158 ± 27 OTUs. Digester function did not correlate with typical biomass descriptors such as volatile suspended solids (VSS) concentration, microbial richness, diversity or evenness indices. However, methane production rate did correlate notably with relative abundances of one Archaeal and nine Bacterial OTUs. These relative abundances were used as descriptors to develop a multiple linear regression (MLR) QSAR equation to predict methane production rates solely based on microbial community data. The model explained over 66% of the variance in the experimental data set based on 149 anaerobic digesters with a standard error of 0.12 L-CH4/LR-day. This study provides a framework to relate engineered process function and microbial community composition which can be further expanded to include different feed stocks and digester operating conditions in order to develop a more robust QSAR model.
Subject(s)
Bioreactors/microbiology , Wastewater , Anaerobiosis , Methane/biosynthesis , Microbiota , RNA, Ribosomal, 16SABSTRACT
INTRODUCTION: The breast is a rare site for metastases from lung cancers. Their occurrence in patients with adenocarcinoma which has the EGFR mutation is exceptional. In this context, it is sometimes difficult to differentiate a second primary breast cancer from a breast metastasis. OBSERVATIONS: We report the cases of two patients who developed breast metastases from lung adenocarcinoma that was TTF1 positive with a deletion of exon 19 of the EGFR gene. A non-smoking woman of Asian origin, presented with a solitary breast metastasis 29 months after being established on first-line chemotherapy. The second case was a Caucasian patient who was an active smoker presented with tumor progression with multiple metastases including involvement of both breasts 10 months after the start of treatment with a tyrosine kinase inhibitor. In both, tumor cells from the breast showed positive immunostaining for TTF1 and genotyping detected the presence of the deletion of exon 19 of the EGFR gene. CONCLUSION: In patients with lung adenocarcinoma and EGFR mutation, immunohistochemical examination, including TTF1 and genotyping of synchronous breast tumour, is needed to confirm its metastatic nature and to guide treatment.
Subject(s)
Adenocarcinoma/genetics , Adenocarcinoma/pathology , Breast Neoplasms/secondary , ErbB Receptors/genetics , Lung Neoplasms/genetics , Lung Neoplasms/pathology , Mutation , Adenocarcinoma of Lung , Aged , Breast Neoplasms/genetics , Female , Humans , Middle AgedABSTRACT
Nine anaerobic digesters, each seeded with biomass from a different source, were operated identically and their quasi steady state function was compared. Subsequently, digesters were bioaugmented with a methanogenic culture previously shown to increase specific methanogenic activity. Before bioaugmentation, different seed biomass resulted in different quasi steady state function, with digesters clustering into three groups distinguished by methane (CH4) production. Digesters with similar functional performance contained similar archaeal communities based on clustering of Illumina sequence data of the V4V5 region of the 16S rRNA gene. High CH4 production correlated with neutral pH and high Methanosarcina abundance, whereas low CH4 production correlated to low pH as well as high Methanobacterium and DHVEG 6 family abundance. After bioaugmentation, CH4 production from the high CH4 producing digesters transiently increased by 11 ± 3% relative to non-bioaugmented controls (p < 0.05, n = 3), whereas no functional changes were observed for medium and low CH4 producing digesters that all had pH higher than 6.7. The CH4 production increase after bioaugmentation was correlated to increased relative abundance of Methanosaeta and Methaospirillum originating from the bioaugment culture. In conclusion, different anaerobic digester seed biomass can result in different quasi steady state CH4 production, SCOD removal, pH and effluent VFA concentration in the timeframe studied. The bioaugmentation employed can result in a period of increased methane production. Future research should address extending the period of increased CH4 production by employing pH and VFA control concomitant with bioaugmentation, developing improved bioaugments, or employing a membrane bioreactor to retain the bioaugment.
Subject(s)
Archaea/genetics , RNA, Ribosomal, 16S/genetics , Anaerobiosis , Bioreactors , MethaneABSTRACT
The uneven distribution of wealth and individual economic capacities are among the main forces, which shape modern societies and arguably bias the emerging social structures. However, the study of correlations between the social network and economic status of individuals is difficult due to the lack of large-scale multimodal data disclosing both the social ties and economic indicators of the same population. Here, we close this gap through the analysis of coupled datasets recording the mobile phone communications and bank transaction history of one million anonymized individuals living in a Latin American country. We show that wealth and debt are unevenly distributed among people in agreement with the Pareto principle; the observed social structure is strongly stratified, with people being better connected to others of their own socioeconomic class rather than to others of different classes; the social network appears to have assortative socioeconomic correlations and tightly connected 'rich clubs'; and that individuals from the same class live closer to each other but commute further if they are wealthier. These results are based on a representative, society-large population, and empirically demonstrate some long-lasting hypotheses on socioeconomic correlations, which potentially lay behind social segregation, and induce differences in human mobility.
Subject(s)
Cell Phone , Models, Theoretical , Population Dynamics , Social Support , Female , Humans , Latin America , Male , Socioeconomic FactorsABSTRACT
The rat cDNA sequence of PC4 (rPC4), representing a new member of the Kex2/subtilisin-like proprotein convertases, demonstrated the presence of at least three rPC4 mRNAs resulting in the production of rPC4-A (654 amino acids), rPC4-B (619 amino acids), and rPC4-C (609 amino acids) with different C-terminal sequences. Analogous to rat PC4, three cDNAs were also found for the mouse PC4. The observed molecular diversity of PC4 mRNA possibly results from the differential splicing and/or exon skipping of the parent gene. PC4 mRNA, with a major form at 2.8 kilobases, was highly abundant in the rat testis but could not be detected by Northern analysis in any other tissues including the central nervous system and peripheral tissues. Testicular cell separation studies combined with Northern analysis indicate the high expression levels of PC4 in germ cells but not in Leydig, Sertoli, or peritubular cells. In situ hybridization histochemistry confirms the site of PC4 gene expression as the pachytene spermatocytes and the round spermatids but not in the elongating spermatids. We also demonstrate the colocalization of PC4 with proenkephalin in testicular germ cells by in situ hybridization. A study of the ontogeny of PC4 indicated that PC4 mRNA was first expressed postnatally between days 19 and 22, coinciding with the first stages of spermiogenesis. The stage-specific expression of PC4 in testis indicates its potential role in the developmental maturation of germ cells and that this convertase may play a specific physiological function in reproduction.
Subject(s)
Isoenzymes/genetics , Proprotein Convertases , Saccharomyces cerevisiae Proteins , Serine Endopeptidases/genetics , Sertoli Cells/enzymology , Subtilisins/genetics , Amino Acid Sequence , Animals , Base Sequence , Blotting, Northern , Cells, Cultured , Cloning, Molecular/methods , Gene Expression , In Situ Hybridization , Male , Mice , Molecular Sequence Data , Oligonucleotides, Antisense , Polymerase Chain Reaction/methods , RNA Probes , Rats , Sequence Homology, Amino Acid , Sertoli Cells/cytologyABSTRACT
Recent data showed that metastatic colorectal (mCRC) tumors exhibiting extended RAS-BRAF mutations were resistant to anti-epidermal growth factor receptor (EGFR) monoclonal antibodies, making these drugs suitable for the so-called "super" wild-type (WT) patients only. This study aimed to compare the extended RAS-BRAF mutation frequency and characteristics according to location of tumor sampling. All consecutive mCRC specimens (N = 1659) referred to our institution from January 2008 till June 2014 were included in the analysis. Tumor genotyping (first for KRAS exon 2, then for BRAF exon 15, and later for KRAS exons 2, 3, and 4 and NRAS exons 2, 3, and 4) was performed with high-resolution melting analysis or allelic discrimination. The factors predicting for the presence of mutation were explored using multivariate binary logistic regression. Overall, the prevalence of KRAS exon 2 was 36.8%, and it was lower in liver metastases (N = 138/490; 28.2%) in comparison with primary tumors (N = 442/1086; 40.7%), lung metastases (16/32; 50%), or other metastatic sites (15/51; 29.4%; P < 0.0001). Similarly, in the 1428 samples analyzed, BRAF mutations were less often found in liver metastases (N = 9/396; 2.3%) as compared to primary tumors (N = 79/959; 8.2%), lung metastases (N = 2/29; 6.9%), or other metastatic locations (N = 2/44; 4.5%; P < 0.0002). Overall occurrence of extended RAS mutation was 51.7%. Of the 503 samples tested, the prevalence of extended RAS-BRAF mutations was twice as low in liver metastases (N = 53/151; 34.2 %) as compared to primary tumors (N = 191/322; 59.3%, P < 0.0001). Univariate analysis identified age ≤65 years, male gender, and liver localization as predictors of super WT status. At multivariate analysis, only liver metastases were retained (RR 2.85 [95% CI 1.91-4.30]). Colorectal liver metastases are twice as likely to exhibit a super WT genotype as compared to other tumor locations independently from other factors. This molecular feature has the potential to influence therapeutic strategy in mCRC patients.
Subject(s)
Colorectal Neoplasms/genetics , Colorectal Neoplasms/pathology , Liver Neoplasms/genetics , Liver Neoplasms/secondary , Mutation , Aged , DNA Mutational Analysis , Exons , Female , GTP Phosphohydrolases/genetics , Genotype , Humans , Male , Membrane Proteins/genetics , Middle Aged , Multivariate Analysis , Neoplasm Metastasis , Prevalence , Proto-Oncogene Proteins B-raf/genetics , Proto-Oncogene Proteins p21(ras)/genetics , Regression Analysis , Signal TransductionABSTRACT
Homogenates of rat neurointermediate lobes were purified by centrifugation on a Percoll gradient. Lysates of the Percoll gradient fractions were incubated with a synthetic octapeptide and pentapeptide substrate (N-acetyl Lys-Arg-Tyr-Asn-Leu-Thr-Ser-Val-amide and N-acetyl Lys-Arg-Tyr-Asn-Leu-amide), and enzymatic characteristics were compiled. Early assays on nonamidated forms revealed carboxypeptidase activity, whereas with the amide derivatives no carboxypeptidase activity could be detected. These amide substrates were therefore used in all subsequent incubations. High levels of a Leu/Thr and Lys/Arg cleavage were present in fractions almost throughout the Percoll gradient. Cleavages at Tyr/Asn, Thr/Ser, and Arg/Tyr were localized at different regions of the Percoll gradient. Surprisingly, none of the five enzymatic activities appear to be localized in the secretory granule fractions as defined by the presence of immunoreactive beta-endorphin in the gradient. All of the five proteolytic activities have a basic pH optimum (pH 8-9), and four of them seem to be thiol proteases, as categorized by inhibitor studies. The fifth one, namely the Try/Asn cleavage, is more likely to be due to a metalloendopeptidase, since it is activated by Zn2+ and Co2+.
Subject(s)
Peptide Hydrolases/metabolism , Pituitary Gland, Posterior/enzymology , Animals , Buffers , Chemical Fractionation , Cytoplasmic Granules/enzymology , Dithiothreitol/pharmacology , Edetic Acid/pharmacology , Hydrogen-Ion Concentration , Oligopeptides/metabolism , Rats , Sodium Chloride/pharmacology , Subcellular Fractions/enzymology , Time Factors , Tissue DistributionABSTRACT
A rat lipoprotein lipase (LPL)-encoding cDNA (LPL) has been entirely sequenced and compared to the sequences of all the LPL cDNAs reported in other species. As expected, high homology was found between the coding exons. The putative catalytic triad, Ser132, Asp156, His241, according to human numbering, is conserved in rat. As is the case in mouse, an Asn444 present in human LPL is also missing. The major divergences between human, mouse and rat LPLs were observed in the untranslated exon 10, where (i) the rat cDNA exhibits a 157-bp insertion and an 81-bp deletion relative to human; (ii) neither the B1 repeat nor the homopurine stretch reported in mouse can be recognized, and (iii) the rat cDNA displays several A+T-rich stretches.
Subject(s)
Lipoprotein Lipase/genetics , Amino Acid Sequence , Animals , Base Sequence , Cloning, Molecular , DNA/genetics , Exons , Molecular Sequence Data , Oligodeoxyribonucleotides/chemistry , Polymerase Chain Reaction , RatsABSTRACT
Site directed mutagenesis of the prohormone convertase PC2 was used to define the effect of certain residues on the zymogen activation of proPC2 and on its binding to the neuroendocrine protein 7B2. These included the oxyanion hole Asp309 (D309N), the N-terminal Glu25 (E25Q and E25K) of proPC2 and the Asp519 (D519E) of the RGD motif within the P-domain of PC2. Heterologous vaccinia virus expression of the wild type and mutant PC2's in endocrine pituitary cells such as AtT20 and GH3 cells demonstrated that the most dramatic effect was observed with the D309N mutant which no longer bound pro7B2 and which exhibited a significant reduction in its capacity to produce beta-endorphin from pro-opiomelanocortin (POMC).
Subject(s)
Nerve Tissue Proteins/metabolism , Pituitary Hormones/metabolism , Subtilisins/chemistry , Subtilisins/metabolism , Animals , Biomarkers, Tumor/metabolism , Cell Line , Furin , Immunosorbent Techniques , Mice , Mutagenesis, Site-Directed , Neoplasm Proteins/metabolism , Neuroendocrine Secretory Protein 7B2 , Pro-Opiomelanocortin/metabolism , Proprotein Convertase 2 , Proprotein Convertases , Protein Precursors/metabolism , Serine Endopeptidases/metabolism , Structure-Activity Relationship , Subtilisins/genetics , TransfectionABSTRACT
The prohormone convertase PC2 is one of the major subtilisin/kexin-like enzymes responsible for the formation of small bioactive peptides in neural and endocrine cells. This convertase is unique among the members of the subtilisin/kexin-like mammalian serine proteinase family in that it undergoes zymogen processing of its inactive precursor proPC2 late along the secretory pathway and requires the help of a PC2-specific binding protein known as 7B2. We hypothesized that some of these unique properties of PC2 are dictated by the presence of PC2-specific amino acids, which in the six other known mammalian convertases are otherwise conserved but distinct. Accordingly, six sites were identified within the catalytic segment of PC2. Herein we report on the site-directed mutagenesis of Tyr194 and of the oxyanion hole Asp309 and the consequences of such mutations on the cellular expression and enzyme activity of PC2. The data show that the Y194D mutation markedly increases the ex vivo ability of PC2 to process proopiomelanocortin (POMC) into beta-endorphin in cells devoid of 7B2, e.g. BSC40 cells. In these cells, expression of native PC2 does not result in the secretion of measurable in vitro activity against a pentapeptide fluorogenic substrate. In contrast, secreted Y194D-PC2 exhibited significant enzymatic activity, even in the absence of 7B2. Based on co-immunoprecipitations and Western blots, binding assays indicate that Tyr194 participates in the interaction of PC2 with 7B2, and that the oxyanion hole Asp309 is critical for the binding of proPC2 with pro7B2.
Subject(s)
Enzyme Precursors/metabolism , Nerve Tissue Proteins/metabolism , Pituitary Hormones/metabolism , Subtilisins/metabolism , Animals , Aspartic Acid/genetics , Aspartic Acid/metabolism , Cell Line , Chlorocebus aethiops , Enzyme Activation , Homeostasis , Mutagenesis, Site-Directed , Neuroendocrine Secretory Protein 7B2 , Proprotein Convertase 2 , Subtilisins/genetics , Tyrosine/genetics , Tyrosine/metabolismABSTRACT
Bovine parathyroid chromogranin A inhibits the cleavage of Z-Ala-Lys-Arg-AMC by either trypsin or IRCM-serine protease 1 (IRCM-SP1), a putative novel processing enzyme originally isolated from porcine pituitary anterior and neurointermediate lobes. On larger substrates, chromogranin A is a reversible competitive inhibitor of the cleavage at pairs of basic amino acids by IRCM-SP1. The substrates tested included pituitary ACTH and adrenal medulla pro-enkephalin-derived peptides such as the 8.6 kDa synenkephalin-containing precursor and peptide B. Chromogranin A is itself selectively processed by IRCM-SP1, and ACTH was shown to compete for such cleavage. These data suggest that chromogranins as a class of acidic proteins could participate in the tissue-specific processing of pro-hormones.