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1.
Zhongguo Zhong Yao Za Zhi ; 49(9): 2422-2433, 2024 May.
Article in Zh | MEDLINE | ID: mdl-38812151

ABSTRACT

The heat shock protein 70 family contains the stress proteins ubiquitous in plants. These proteins are involved in the responses to different abiotic stress conditions and have highly conserved gene sequences. However, little is known about the molecular mechanisms of Fritillaria cirrhosa in response to high-temperature stress. Here, 26 HSP70s, FcHSP70-1 to FcHSP70-26, were identified from the transcriptome data of root, bulb, stem, leaf, and fruit samples of F. cirrhosa. The proteins encoded by FcHSP70s had the lengths ranging from 560 aa to 944 aa, with the molecular weight of 61.64-100.01 kDa and the theoretical isoelectric point between 5.00 and 6.59. The secondary structural elements of HSP70s were mainly random coils and α-helixes. Subcellular localization prediction revealed that FcHSP70s were distributed in mitochondria, chloroplasts, nuclei, endoplasmic reticulum, and cytoplasm. The phylogenetic tree showed that 7 members of the HSP70 family belonged to the Dnak subfamily and 19 members belonged to the HSP110/SSE subfamily. In addition, the qRT-PCR results showed that the expression of FcHSP70-5, FcHSP70-8, FcHSP70-17, FcHSP70-18, and FcHSP70-23 in F. cirrhosa was significantly up-regulated at 35 ℃, which indicated that these genes might play a role in the response to high temperature stress. In addition, compared with other tissues, stems and leaves were sensitive to high temperature stress, with the expression of 18 genes up-regulated by 18.18 and 8.03 folds on average, respectively. These findings provide valuable information about the molecular mechanism of HSP70s of F. cirrhosa in response to high temperature stress.


Subject(s)
Fritillaria , Gene Expression Regulation, Plant , HSP70 Heat-Shock Proteins , Phylogeny , Plant Proteins , HSP70 Heat-Shock Proteins/genetics , HSP70 Heat-Shock Proteins/metabolism , HSP70 Heat-Shock Proteins/chemistry , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Proteins/chemistry , Fritillaria/genetics , Fritillaria/chemistry , Hot Temperature , Stress, Physiological/genetics , Gene Expression Profiling , Multigene Family
2.
Plant Biotechnol J ; 21(6): 1191-1205, 2023 06.
Article in English | MEDLINE | ID: mdl-36786225

ABSTRACT

In contrast to CUT&Tag approaches for profiling bulk histone modifications, current CUT&Tag methods for analysing specific transcription factor (TF)-DNA interactions remain technically challenging due to TFs having relatively low abundance. Moreover, an efficient CUT&Tag strategy for plant TFs is not yet available. Here, we first applied biotinylated Tn5 transposase-mediated CUT&Tag (B-CUT&Tag) to produce high-quality libraries for interrogating TF-DNA interactions. B-CUT&Tag combines streptavidin-biotin-based DNA purification with routine CUT&Tag, optimizing the removal of large amounts of intact chromatin not targeted by specific TFs. The biotinylated chromatin fragments are then purified for construction of deep sequencing libraries or qPCR analysis. We applied B-CUT&Tag to probe genome-wide DNA targets of Squamosa promoter-binding-like protein 9 (SPL9), a well-established TF in Arabidopsis; the resulting profiles were efficient and consistent in demonstrating its well-established target genes in juvenile-adult transition/flowering, trichome development, flavonoid biosynthesis, wax synthesis and branching. Interestingly, our results indicate functions of AtSPL9 in modulating growth-defence trade-offs. In addition, we established a method for applying qPCR after CUT&Tag (B-CUT&Tag-qPCR) and successfully validated the binding of SPL9 in Arabidopsis and PHR2 in rice. Our study thus provides a convenient and highly efficient CUT&Tag strategy for profiling TF-chromatin interactions that is widely applicable to the annotation of cis-regulatory elements for crop improvement.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Transcription Factors/genetics , Transcription Factors/metabolism , Arabidopsis/genetics , Arabidopsis/metabolism , DNA/genetics , DNA/metabolism , Chromatin/metabolism , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism
3.
J Cell Mol Med ; 26(7): 1876-1885, 2022 04.
Article in English | MEDLINE | ID: mdl-35285130

ABSTRACT

Angiopoietin-like protein (ANGPTL) 4 is a key factor in the regulation of lipid and glucose metabolism in metabolic diseases. ANGPTL4 is highly expressed in various cancers, but the regulation of energy metabolism in tumours remains to be determined. This study explored the role of ANGPTL4 in aerobic glycolysis, glutamine consumption and fatty acid oxidation in nonsmall cell lung cancer (NSCLC) cells. Two NSCLC cell lines (A549 and H1299) were used to investigate the role of ANGPTL4 in energy metabolism by tracer techniques and with Seahorse XF technology in ANGPTLs4 knockdown cells. RNA microarrays and specific inhibitors were used to identify targets in ANGPTLs4-overexpressing cells. The results showed that knockdown of ANGPTLs4 could inhibit energy metabolism and proliferation in NSCLC. ANGPTLs4 had no significant effect on glycolysis but affected glutamine consumption and fatty acid oxidation. Knockdown of ANGPTLs4 also significantly inhibited tumour metastasis and energy metabolism in mice and had a weak effect on glycolysis. RNA microarray analysis showed that ANGPTLs4 significantly affected glutaminase (GLS) and carnitine palmitoyl transferase 1 (CPT1). ANGPTLs4-overexpressing cells were exposed to a glutamine deprivation environment, and cell proliferation and energy metabolism were significantly decreased but still differed from normal NSCLC cells. Treatment of ANGPTLs4-overexpressing cells with GLS and CPT1 inhibitors simultaneously prevented the regulatory effects on cell proliferation and energy metabolism. ANGPTLs4 could promote glutamine consumption and fatty acid oxidation but not glycolysis or accelerate energy metabolism in NSCLC.


Subject(s)
Carcinoma, Non-Small-Cell Lung , Lung Neoplasms , Animals , Carcinoma, Non-Small-Cell Lung/pathology , Cell Line, Tumor , Cell Proliferation/genetics , Fatty Acids/metabolism , Glutamine/metabolism , Glycolysis , Lung Neoplasms/pathology , Mice
4.
Molecules ; 24(12)2019 Jun 13.
Article in English | MEDLINE | ID: mdl-31200472

ABSTRACT

Due to the existence of Lingzhi adulteration, there is a growing demand for species classification of medicinal mushrooms by various techniques. The objective of this study was to explore a rapid and reliable way to distinguish between different Lingzhi species and compare the influence of data pretreatment methods on the recognition results. To this end, 120 fresh fruiting bodies of Lingzhi were collected, and all of them were analyzed by attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR). Random forest (RF), support vector machine (SVM) and partial least squares discriminant analysis (PLS-DA) classification models were established for raw and pretreated second derivative (SD) spectral matrices to authenticate different Lingzhi species. The results of multivariate statistical analysis indicated that the SD preprocessing method displayed a higher classification ability, which may be attributed to the analysis of powder samples that requires removal of overlapping peaks and baseline shifts. Compared with RF, the results of the SVM and PLS-DA methods were more satisfying, and their accuracies for the test set were both 100%. Among SVM and PLS-DA, the training set and test set accuracy of PLS-DA were both 100%. In conclusion, ATR-FTIR spectroscopy data pretreated by SD combined with PLS-DA is a simple, rapid, non-destructive and relatively inexpensive method to discriminate between mushroom species and provide a good reference to quality assessment.


Subject(s)
Reishi/chemistry , Spectroscopy, Fourier Transform Infrared/methods , Discriminant Analysis , Least-Squares Analysis , Multivariate Analysis
5.
Pharmazie ; 74(8): 477-480, 2019 08 01.
Article in English | MEDLINE | ID: mdl-31526440

ABSTRACT

Stroke is a multifactorial disease and a consequence of morbidities of diabetes, obesity, hypertension, and heart diseases. Leptin is a major adipokine that regulates weight balance and energy homeostasis, the level of which has been considered as an indicator of acute ischemic stroke. In the present study, we confirmed the high level of leptin and noradrenaline in stroke patients and mouse models as well as oxygen-glucose deprivation (OGD) primary cerebral neurons. Leptin administration increased noradrenaline concentration and dopamine ß-monooxygenase (DBH) but decreased noradrenaline transporter (NET) expression in primary cerebral neurons. Moreover, induced noradrenaline concentration, DBH activity, and inhibited NET were blunted by TG101348 (JAK2 inhibitor). JAK2 silencing also abolished the effects of leptin on noradrenaline metabolism.


Subject(s)
Brain Ischemia/drug therapy , Brain Ischemia/metabolism , Leptin/pharmacology , Norepinephrine/metabolism , Animals , Case-Control Studies , Cells, Cultured , Dopamine beta-Hydroxylase/metabolism , Humans , Janus Kinase 2/antagonists & inhibitors , Janus Kinase 2/metabolism , Male , Mice , Neurons/cytology , Neurons/metabolism , Norepinephrine Plasma Membrane Transport Proteins/metabolism , Pyrrolidines/pharmacology , Sulfonamides/pharmacology
6.
Med Sci Monit ; 22: 258-66, 2016 Jan 25.
Article in English | MEDLINE | ID: mdl-26806131

ABSTRACT

BACKGROUND: We performed this meta-analysis to evaluate the efficacy of intrathecal sufentanil in preventing shivering during neuraxial anesthesia. MATERIAL/METHODS: We searched the Cochrane Library, PubMed, and Embase for all randomized controlled trials (RCT) on use of intrathecal sufentanil for preventing shivering during neuraxial anesthesia. References of retrieved articles were also screened. The quality of the studies was evaluated by the method recommended by the Cochrane Collaboration. Meta-analysis was conducted using the Cochrane Collaboration's RevMan 5.3 software. The primary outcome was incidence and severity of shivering, and the secondary outcomes were drug-related complications of pruritus, nausea, vomiting, hypotension, and bradycardia. RESULTS: Eight original RCTs investigating a total of 1032 patients, of whom 599 received sufentanil and 473 received placebo, met the inclusion criteria. Compared to the placebo group, sufentanil did not reduce incidence of shivering (OR, 0.60; 95% CI, 0.35 to 1.01; P=0.06), but it increased the incidence of pruritus (OR, 12.52; 95% CI, 5.07 to 30.91; P<0.00001). Compared to the placebo group, sufentanil did not increase the incidence of nausea (OR, 0.69; 95% CI, 0.41 to 1.16; P=0.16), hypotension (OR, 0.93; 95% CI, 0.62 to 1.41; P=0.74), or bradycardia (OR, 0.86; 95% CI, 0.41 to 1.82; P=0.70). In addition, sufentanil reduced the incidence of vomiting during neuraxial anesthesia (OR, 0.45; 95% CI, 0.22 to 0.92; P=0.03). CONCLUSIONS: Neither epidural nor subarachnoid intrathecal sufentanil reduced shivering during neuraxial anesthesia, but it did increase the incidence of pruritus.


Subject(s)
Anesthesia , Injections, Spinal , Shivering/drug effects , Sufentanil/administration & dosage , Sufentanil/pharmacology , Bradycardia/epidemiology , Bradycardia/etiology , Humans , Hypotension/epidemiology , Hypotension/etiology , Incidence , Injections, Spinal/adverse effects , Placebos , Pruritus/epidemiology , Pruritus/etiology , Sufentanil/adverse effects , Vomiting/epidemiology , Vomiting/etiology
7.
Water Sci Technol ; 73(4): 707-15, 2016.
Article in English | MEDLINE | ID: mdl-26901711

ABSTRACT

A novel bioflocculant MBF057 produced by a salt-tolerant Haloplanus vescus HW0579 was investigated in this study. The effects of culture conditions such as initial pH, inoculum size, and chemical oxygen demand (COD) of K-acid wastewater on MBF0579 production were studied. The result showed that 8.09 g/L purified MBF0579 was extracted with the following optimized conditions: 780 mg/L COD of K-acid wastewater as carbon source, inoculum size 12.5%, and initial pH 7.0. The biopolymer contained 78.6% polysaccharides and 21.1% proteins. The highest flocculating rate of 81.86 and 95.07% for the COD and chroma of acid brilliant scarlet gelb rot (yellow/red, GR) dye wastewater were achieved at a dosage of 150 mg/L, pH 2.0 and contact time 100 min. Overall, these findings indicate bioflocculation offers an effective alternative method of decreasing acid brilliant scarlet GR during dye wastewater treatment.


Subject(s)
Coloring Agents/metabolism , Environmental Restoration and Remediation/methods , Euryarchaeota/metabolism , Water Pollutants, Chemical/metabolism , Water Purification/methods , Azo Compounds/metabolism , Benzenesulfonates/metabolism , Biodegradation, Environmental , Flocculation , Hydrogen-Ion Concentration , Wastewater/chemistry , Wastewater/microbiology
8.
Guang Pu Xue Yu Guang Pu Fen Xi ; 36(6): 1726-30, 2016 Jun.
Article in Zh | MEDLINE | ID: mdl-30052380

ABSTRACT

With the aim of establishing a rapid method to discriminate Boletus tomentipes samples from different regions, FTIR spectroscopy with the aid of principal component analysis and clustering analysis were used in the present study. The information of infrared spectra of B. tomentipes samples originated from 15 regions has been collected. The original infrared spectra was pretreated by multiplicative signal correction (MSC) in combination with second derivative and Norris smooth. The spectral data were analyzed by principal component analysis and cluster analysis after the optimal pretreatment of MSC+SD+ND (15, 5), and the reasons for the differences of B. tomentipes samples from different regions could be explained through the principal component loading plot. The results showed that, the RSDs of repeatability, accuracy and stability of the method were 0.17%, 0.08% and 0.27%, respectively, which indicated the method was stable and reliable. The cumulative contribution of first three principal components of PCA was 87.24% which could reflect the most information of the samples. Principal component scores scatter plot displaying the samples from same origin could clustered together and samples from different areas distributed in a relatively independent space. Which can distinguish samples collected from different origins, effectively. The loading plot of principal component showed that with the principal component contribution rate decreasing, the captured sample information of principal component was also reducing. In the wave number of 3 571, 2 958, 1 625, 1 456, 1 405, 1 340, 1 191, 1 143, 1 084, 935, 840, 727 cm-1, the first principal component captured a large amount of sample information which attributed to carbohydrates, proteins, amino acids, fat, fiber and other chemical substances. Which showed that the different contents of these chemical substances may be the basis of discrimination of B. tomentipes samples from different origins. Cluster analysis based on ward method and Euclidean distance has shown the classification and correlation among samples. Samples originated from 15 regions could be clustered correctly in accordance with the basic origins and the correct rate was 93.33%. Which can be used to identify and analyze B. tomentipes collected from different sites. Fourier transform infrared spectroscopy combined with principal component analysis and cluster analysis can be effectively used to discriminate origins of B. tomentipes mushrooms and the reasons for the differences of B. tomentipes samples from different regions could be explained. This method could provide a reliable basis for discrimination and application of wild edible mushrooms.

9.
Guang Pu Xue Yu Guang Pu Fen Xi ; 36(11): 3510-6, 2016 Nov.
Article in Zh | MEDLINE | ID: mdl-30198659

ABSTRACT

Fourier transform infrared spectroscopy combined with chemometrics was used to establish a method for rapid identification of different species of bolete mushrooms and determination of total mercury (Hg). In this study, 15 species of bolete mushrooms were used and the information of infrared spectra of 48 samples was collected. Meanwhile, the total Hg was determined with cold-vapour atomic absorption spectroscopy and direct mercury analyzer. The food safety of bolete mushrooms was evaluated according to provisional tolerable weekly intake (PTWI) for Hg recommended by the United Nations food and agriculture organization and the World Health Organization (FAO/WHO). The original infrared spectra were optimized with Norris smooth, multiplicative signal correction (MSC), second derivative, orthogonal signal correction and wavelet compression (OSCW). The spectra data were analyzed with principal component analysis (PCA) and partial least squares discriminant analysis (PLS-DA) after the optimal pretreatment. Then the discrimination model for different species of bolete mushrooms and prediction model of Hg content were established, respectively. The results showed that: (1) The cumulative contribution of first three principal components of PCA was 77.1%. Different species of boletes can be obviously distinguished in principal component score plot. It indicated that the chemical composition or contents were different in these species of boletes. (2) There were significant differences in total Hg contents in different samples and the total Hg content in the boletes were 0.17~15.2 mg·kg-1 dry weight (dw). If adults (60 kg) ate 300 g fresh bolete mushrooms a week, Hg intakes in a few samples were higher than the PTWI standard with potential risks. (3) The infrared spectra data in combination with the total Hg content was performed by partial least squares discriminant analysis. The mushroom samples with low (≤1.95 mg·kg-1 dw), medium (2.05~3.9 mg·kg-1 dw) and high (≥4.1 mg·kg-1 dw) total Hg content could be discriminated. Moreover, the more different the Hg content was, the more easily to distinguish. In addition, the prediction model of total Hg content of boletes was established. The R2 and RMSEE of the training set were 0.911 4 and 1.09, respectively while R2 and RMSEP of validation set were 0.949 7 and 0.669 5, respectively. The predictive values of total Hg content in boletes were approximate to the measured values which showed that the model has good predictive effect. Infrared spectroscopy combined with chemometrics can be used for rapid identification of bolete species and discrimination of bolete samples with different contents of total Hg. Furthermore, the total Hg content could also be predicted, accurately. This study may provide a rapid and simple method for quality control and edible safety assessment of wild-grown bolete mushrooms.


Subject(s)
Agaricales , Least-Squares Analysis , Mercury , Principal Component Analysis , Spectrophotometry, Atomic , Spectroscopy, Fourier Transform Infrared
10.
Guang Pu Xue Yu Guang Pu Fen Xi ; 36(7): 2117-23, 2016 Jul.
Article in Zh | MEDLINE | ID: mdl-30035896

ABSTRACT

In order to establish a rapid method for discriminating Boletus edulis mushroom, Fourier transform infrared spectroscopy combined with multivariate statistical analysis were used to study B. edulis which were collected from different origins and different years. The original infrared spectra of all the 152 B. edulis samples collected from 2011 to 2014 and 26 different areas of Yunnan Province were optimized with orthogonal signal correction and wavelet compression (OSCW) method. The spectral data that before and after being preprocessed with OSCW were analyzed with partial least squares discriminant analysis (PLS-DA). The classification results of PLS-DA were compared. Then the 152 B. edulis samples were randomly divided into a training set (120) and a validation set (32) to establish the PLS classification prediction model. The results showed that, after OSCW processing, the classification result of PLS-DA was significantly better than the other one which was not processed by OSCW. Principal component score plot can accurately distinguish B. edulis samples collected from different years and different origins. It indicated that OSCW can effectively eliminate the noise of spectra and reduce the unrelated interference information about the dependent variables to improve the accuracy and calculation speed of spectral analysis. Before OSCW preprocessed, the R2 and RMSEE of PLS model of the training set were 0.790 1 and 21.246 5 respectively while R2 and RMSEP of the model of validation set were 0.922 5 and 14.429 2. After OSCW pretreatment, R2 and RMSEE of the training set were 0.852 3 and 17.238 1 while R2 and RMSEP of validation set were 0.845 4 and 20.87. It suggested that OSCW could improve the predictive effect of the training set, but the over-fitting of OSCW-PLS may reduce the predictive ability of validation set. Therefore, it was unsuitable to establish a model with OSCW combined with PLS. In a conclusion, OSCW combined with PLS-DA can eliminate a large amount of spectrum interference information. This method could accurately distinguish B. edulis samples collected from different years and different origins. It could provide a reliable basis for the discrimination and classification of wild edible fungi.


Subject(s)
Agaricales/chemistry , Spectroscopy, Fourier Transform Infrared , China , Discriminant Analysis , Least-Squares Analysis
11.
Plant Cell ; 24(6): 2635-48, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22669881

ABSTRACT

Arabidopsis thaliana flowers emit volatile terpenes, which may function in plant-insect interactions. Here, we report that Arabidopsis MYC2, a basic helix-loop-helix transcription factor, directly binds to promoters of the sesquiterpene synthase genes TPS21 and TPS11 and activates their expression. Expression of TPS21 and TPS11 can be induced by the phytohormones gibberellin (GA) and jasmonate (JA), and both inductions require MYC2. The induction of TPS21 and TPS11 results in increased emission of sesquiterpene, especially (E)-ß-caryophyllene. DELLAs, the GA signaling repressors, negatively affect sesquiterpene biosynthesis, as the sesquiterpene synthase genes were repressed in plants overaccumulating REPRESSOR OF GA1-3 (RGA), one of the Arabidopsis DELLAs, and upregulated in a penta DELLA-deficient mutant. Yeast two-hybrid and coimmunoprecipitation assays demonstrated that DELLAs, represented by RGA, directly interact with MYC2. In yeast cells, the N terminus of MYC2 was responsible for binding to RGA. MYC2 has been proposed as a major mediator of JA signaling and crosstalk with abscisic acid, ethylene, and light signaling pathways. Our results demonstrate that MYC2 is also connected to GA signaling in regulating a subset of genes. In Arabidopsis inflorescences, it integrates both GA and JA signals into transcriptional regulation of sesquiterpene synthase genes and promotes sesquiterpene production.


Subject(s)
Alkyl and Aryl Transferases/genetics , Arabidopsis Proteins/metabolism , Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/metabolism , Repressor Proteins/metabolism , Sesquiterpenes/metabolism , Alkyl and Aryl Transferases/metabolism , Arabidopsis/drug effects , Arabidopsis/genetics , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/genetics , Cyclopentanes/metabolism , Cyclopentanes/pharmacology , Gene Expression Regulation, Plant , Gibberellins/metabolism , Gibberellins/pharmacology , Inflorescence/genetics , Inflorescence/metabolism , Light , Mutation , Oxylipins/metabolism , Oxylipins/pharmacology , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Polycyclic Sesquiterpenes , Promoter Regions, Genetic , Repressor Proteins/genetics , Signal Transduction , Two-Hybrid System Techniques
12.
Guang Pu Xue Yu Guang Pu Fen Xi ; 35(5): 1398-403, 2015 May.
Article in English | MEDLINE | ID: mdl-26415467

ABSTRACT

P, Na, Ca, Cu, Fe, Mg, Zn, As, Cd, Co, Cr and Ni, contents have been examined in caps and stipes of Boletus tomentipes collected from different sites of Yunnan province, southwest China. The elements were determined using inductively coupled plasma atomic emission spectroscopy (ICP-AES) with microwave digestion. P, Ca, Mg, Fe, Zn and Cu were the most abundant amongst elements determined in Boletus tomentipes. The caps were richer in P, Mg, Zn and Cd, and the stipes in Ca, Co and Ni. Cluster analysis showed a difference between Puer (BT7 and BT8) and other places. The PCA explained about 77% of the total variance, and the minerals differentiating these places were P (PC1) together with Ca, Cu, Fe, Mg, As and Ni, Na (PC2) together with Cd, and Zn (PC3). The results of this study imply that element concentrations of a mushroom are mutative when collected from the different bedrock soil geochemistry.


Subject(s)
Basidiomycota/chemistry , Minerals/analysis , Spectrophotometry, Atomic , China , Cluster Analysis , Microwaves , Soil
13.
MycoKeys ; 103: 57-70, 2024.
Article in English | MEDLINE | ID: mdl-38544697

ABSTRACT

Phylogenetic analyses and morphological examination confirmed two new species in the tropical polypore genus Tropicoporus, T.oceanianus and T.zuzaneae, from Australia and tropical Asia, respectively. A phylogenetic analysis based on the two DNA markers including the nuclear ribosomal internal transcribed spacer (ITS) region and the large subunit (nLSU) gene shows that these two new species form two independent lineages nested in the genus Tropicoporus. T.oceanianus is characterized by perennial and ungulate basidiomata, the occasional presence of hymenial setae, a trimitic hyphal structure in the context and a dimitic hyphal system in the trama, and broadly ellipsoid to subglobose basidiospores measuring 5.2-6 × 4-5 µm. T.zuzaneae is characterized by perennial and resupinate basidiomata with distinct receding margin, glancing pores, very thin to almost lacking subiculum, a dimitic hyphal structure, the absence of any setal elements, broadly ellipsoid to subglobose basidiospores measuring 3.8-4.9 × 3-4.2 µm. The differences among the new species and their phylogenetically related and morphologically similar species are discussed.

14.
MycoKeys ; 105: 97-118, 2024.
Article in English | MEDLINE | ID: mdl-38708026

ABSTRACT

Phylogenetic and morphological analyses on Perenniporia s.l. were carried out. Phylogenies on Perenniporia s.l. are reconstructed with two loci DNA sequences including the internal transcribed spacer (ITS) regions and the large subunit (nLSU). Two new species from Yunnan Province, southwest China, Perenniporiaprunicola and P.rosicola in Perenniporia s.l., are illustrated and described. Perenniporiaprunicola is characterised by the perennial and resupinate basidiomata with a clay pink pore surface when fresh, a trimitic hyphal system, the presence of clavate to fusiform hymenial cystidia, ellipsoid to broadly ellipsoid basidiospores measuring 4.8-6.2 × 3.6-4.5 µm. Perenniporiarosicola is characterised by annual and resupinate basidiomata with a white pore surface when fresh, a dimitic hyphal system, the presence of dendrohyphidia, broadly ellipsoid to subglobose basidiospores measuring 5-5.8 × 4-5.2 µm. In addition, Crassisporus is a genus in Perenniporia s.l., in which two new combinations Crassisporusminutus and C.mollissimus are proposed. Main morphological characteristics of species related to new taxa are also provided.

15.
MycoKeys ; 107: 249-272, 2024.
Article in English | MEDLINE | ID: mdl-39169990

ABSTRACT

Cyanosporus is a cosmopolitan genus characterized by effused-reflexed to pileate basidiomata with a bluish tint and allantoid to cylindrical basidiospores which are negative to weakly positive in Melzer's reagent and Cotton Blue, causing a brown rot. Three new species of Cyanosporus, namely, C.linzhiensis, C.miscanthi and C.tabuliformis are described and illustrated. Phylogenies on Cyanosporus are reconstructed with seven loci DNA sequences including ITS, nLSU, nSSU, mtSSU, RPB1, RPB2 and TEF1 based on phylogenetic analyses combined with morphological examination. The description for the new species is given. The main morphological characteristics of all 38 accepted species in Cyanosporus are summarized.

16.
MycoKeys ; 104: 71-89, 2024.
Article in English | MEDLINE | ID: mdl-38665969

ABSTRACT

The genus Favolaschia within the family Mycenaceae is characterised by the gelatinous basidiomata with poroid hymenophore and most species inhabit monocotyledonous plants. In this study, many samples covering a wide geographic range in China were examined morphologically and phylogenetically using concatenated ITS1-5.8S-ITS2-nLSU sequence data. Three new species clustering in Favolaschiasect.Anechinus, namely Favolaschiaimbricata, F.miscanthi and F.sinarundinariae, are described. Favolaschiaimbricata is characterised by imbricate basidiomata with pale grey to greyish colour when fresh and broadly ellipsoid basidiospores measuring 7-9 × 5-6.8 µm; F.miscanthi is characterised by satin white basidiomata when fresh, broadly ellipsoid basidiospores measuring 7.5-10 × 5.5-7 µm and inhabit rotten Miscanthus; F.sinarundinariae is characterised by greyish-white basidiomata when fresh, dark grey near the base upon drying, broadly ellipsoid to subglobose basidiospores measuring 7-9 × 5-7 µm and inhabit dead Sinarundinaria. The differences amongst the new species and their morphologically similar and phylogenetically related species are discussed. In addition, an updated key to 19 species of Favolaschia found in China is provided.

17.
MycoKeys ; 107: 75-94, 2024.
Article in English | MEDLINE | ID: mdl-39045085

ABSTRACT

Two taxonomically controversial polypore genera with reddish brown to orange basidiomata that stain reddish with KOH solution, Aurantiporus and Hapalopilus, are revised based on additional sampling, morphological examination, and phylogenetic analysis of a combined dataset of ITS1-5.8S-ITS2-nLSU sequences. Hapalopilus is a monophyletic genus belonging to Phanerochaetaceae, whereas Aurantiporus is a polyphyletic genus belonging to Meruliaceae. Hapalopilus and Aurantiporus s. str. are circumscribed, and two new species - Aurantiporusorientalis and Hapalopilustabuliformis - are described and illustrated from temperate China. In addition, four new combinations, viz. Aurantiporusalboaurantius, A.mutans, A.tropicus and Luteoporiaalbocitrina, are proposed based on morphology and phylogenetic analysis. The relationships between Aurantiporus and Hapalopilus are discussed.

18.
Front Cell Infect Microbiol ; 13: 1105918, 2023.
Article in English | MEDLINE | ID: mdl-36816592

ABSTRACT

Two new corticioid fungi in the family Phanerochaetaceae, Phanerochaete shenghuaii and Rhizochaete variegata, are described and illustrated from Southwest China based on morphological characteristics and molecular data. Phanerochaete shenghuaii is characterized by annual, effused, inseparable basidiocarps from substrate, ivory white to cream hymenial surface when juvenile, buff to yellowish brown with age, buff in KOH, a monomitic hyphal system, smooth cystidia, and ellipsoid basidiospores measuring 4.8-6 × 2.5-3.8 µm. Rhizochaete variegata is characterized by annual, effused, easily separable basidiocarps from substrate, buff-yellow to clay-pink fresh hymenial surface becoming cream to buff upon drying, violet in KOH, a monomitic hyphal system, encrusted cystidia, and ellipsoid basidiospores measuring 3-4 × 2.2-3 µm. The phylogenetic analyses based on ITS + nLSU rDNA sequences confirm the placement of the two new species, respectively, in the Phanerochaete clade and the Rhizochaete clade of Phanerochaetaceae. Phylogenetically related and morphologically similar species to these two new species are discussed.


Subject(s)
Basidiomycota , Polyporales , Polyporales/genetics , DNA, Ribosomal Spacer/genetics , Phylogeny , Spores, Fungal , China
19.
MycoKeys ; 96: 173-191, 2023.
Article in English | MEDLINE | ID: mdl-37252056

ABSTRACT

Sidera, belonging to the Rickenella clade of Hymenochaetales, is a worldwide genus with mostly poroid hymenophore of wood-inhabiting fungi. Two new species in the genus, Sideraamericana and S.borealis, are described and illustrated from China and North America based on morphological and molecular evidence. They were mainly found growing on rotten wood of Abies, Picea and Pinus. S.americana is characterized by annual, resupinate basidiomata with silk sheen when dry, round pores (9-11 per mm), a dimitic hyphal system, and allantoid basidiospores measuring 3.5-4.2 × 1 µm. S.borealis is characterized by annual, resupinate basidiomata with cream to pinkish buff dry pore surface, angular pores (6-7 per mm), a dimitic hyphal system, and allantoid basidiospores measuring 3.9-4.1 × 1-1.1 µm. Phylogenetic analysis based on a combined 2-locus dataset [ITS1-5.8S-ITS2 (ITS) + nuclear large subunit RNA (nLSU)] shows that the two species are members of Sidera, and they are compared with morphologically similar and phylogenetically related species, respectively. An identification key to 18 accepted species of Sidera in worldwide is provided.

20.
Front Cell Infect Microbiol ; 13: 1189600, 2023.
Article in English | MEDLINE | ID: mdl-37284500

ABSTRACT

Two new species of Scytinostroma viz. S. acystidiatum and S. macrospermum, are described from southwest China. Phylogeny based on ITS + nLSU dataset demonstrates that samples of the two species form two independent lineages and are different in morphology from the existing species of Scytinostroma. Scytinostroma acystidiatum is characterized by resupinate, coriaceous basidiomata with cream to pale yellow hymenophore, a dimitic hyphal structure with generative hyphae bearing simple septa, the absence of cystidia, and amyloid, broadly ellipsoid basidiospores measuring 4.7-7 × 3.5-4.7 µm. Scytinostroma macrospermum is characterized by resupinate, coriaceous basidiomata with cream to straw yellow hymenophore, a dimitic hyphal structure with generative hyphae bearing simple septa, numerous cystidia embedded or projecting from hymenium, and inamyloid, ellipsoid basidiospores measuring 9-11 × 4.5-5.5 µm. The differences between the new species and morphologically similar and phylogenetically related species are discussed.


Subject(s)
Basidiomycota , DNA, Ribosomal Spacer/chemistry , DNA, Ribosomal/chemistry , DNA, Fungal/genetics , Sequence Analysis, DNA , Basidiomycota/genetics , China , Spores, Fungal
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