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1.
Cell ; 150(3): 533-48, 2012 Aug 03.
Article in English | MEDLINE | ID: mdl-22863007

ABSTRACT

Nephronophthisis-related ciliopathies (NPHP-RC) are degenerative recessive diseases that affect kidney, retina, and brain. Genetic defects in NPHP gene products that localize to cilia and centrosomes defined them as "ciliopathies." However, disease mechanisms remain poorly understood. Here, we identify by whole-exome resequencing, mutations of MRE11, ZNF423, and CEP164 as causing NPHP-RC. All three genes function within the DNA damage response (DDR) pathway. We demonstrate that, upon induced DNA damage, the NPHP-RC proteins ZNF423, CEP164, and NPHP10 colocalize to nuclear foci positive for TIP60, known to activate ATM at sites of DNA damage. We show that knockdown of CEP164 or ZNF423 causes sensitivity to DNA damaging agents and that cep164 knockdown in zebrafish results in dysregulated DDR and an NPHP-RC phenotype. Our findings link degenerative diseases of the kidney and retina, disorders of increasing prevalence, to mechanisms of DDR.


Subject(s)
DNA Damage , DNA-Binding Proteins/metabolism , Exome , Kidney Diseases, Cystic/genetics , Microtubule Proteins/metabolism , Animals , Cilia/metabolism , Gene Knockdown Techniques , Genes, Recessive , Humans , MRE11 Homologue Protein , Mice , Proteins , Signal Transduction , Zebrafish/embryology , Zebrafish/metabolism
2.
PLoS Genet ; 16(4): e1008583, 2020 04.
Article in English | MEDLINE | ID: mdl-32236127

ABSTRACT

The precise control of eye size is essential for normal vision. TMEM98 is a highly conserved and widely expressed gene which appears to be involved in eye size regulation. Mutations in human TMEM98 are found in patients with nanophthalmos (very small eyes) and variants near the gene are associated in population studies with myopia and increased eye size. As complete loss of function mutations in mouse Tmem98 result in perinatal lethality, we produced mice deficient for Tmem98 in the retinal pigment epithelium (RPE), where Tmem98 is highly expressed. These mice have greatly enlarged eyes that are very fragile with very thin retinas, compressed choroid and thin sclera. To gain insight into the mechanism of action we used a proximity labelling approach to discover interacting proteins and identified MYRF as an interacting partner. Mutations of MYRF are also associated with nanophthalmos. The protein is an endoplasmic reticulum-tethered transcription factor which undergoes autoproteolytic cleavage to liberate the N-terminal part which then translocates to the nucleus where it acts as a transcription factor. We find that TMEM98 inhibits the self-cleavage of MYRF, in a novel regulatory mechanism. In RPE lacking TMEM98, MYRF is ectopically activated and abnormally localised to the nuclei. Our findings highlight the importance of the interplay between TMEM98 and MYRF in determining the size of the eye.


Subject(s)
Eye/anatomy & histology , Eye/metabolism , Membrane Proteins/metabolism , Transcription Factors/antagonists & inhibitors , Animals , Electroretinography , Eye Abnormalities/genetics , Female , Gene Deletion , Loss of Function Mutation , Male , Membrane Proteins/genetics , Mice , Mice, Knockout , Organ Size/genetics , Protein Binding , Protein Transport , Retinal Pigment Epithelium/abnormalities , Retinal Pigment Epithelium/metabolism , Retinaldehyde/metabolism , Transcription Factors/chemistry , Transcription Factors/metabolism
3.
Int J Mol Sci ; 21(22)2020 Nov 20.
Article in English | MEDLINE | ID: mdl-33233821

ABSTRACT

During development, the precise control of tissue morphogenesis requires changes in the cell number, size, shape, position, and gene expression, which are driven by both chemical and mechanical cues from the surrounding microenvironment. Such physical and architectural features inform cells about their proliferative and migratory capacity, enabling the formation and maintenance of complex tissue architecture. In polarised epithelia, the apical cell cortex, a thin actomyosin network that lies directly underneath the apical plasma membrane, functions as a platform to facilitate signal transmission between the external environment and downstream signalling pathways. One such signalling pathway culminates in the regulation of YES-associated protein (YAP) and TAZ transcriptional co-activators and their sole Drosophila homolog, Yorkie, to drive proliferation and differentiation. Recent studies have demonstrated that YAP/Yorkie exhibit a distinct function at the apical cell cortex. Here, we review recent efforts to understand the mechanisms that regulate YAP/Yki at the apical cell cortex of epithelial cells and how normal and disturbed YAP-actomyosin networks are involved in eye development and disease.


Subject(s)
Adaptor Proteins, Signal Transducing/physiology , Drosophila Proteins/physiology , Epithelial Cells , Eye , Nuclear Proteins/physiology , Organogenesis , Trans-Activators/physiology , Transcription Factors/physiology , Animals , Cell Differentiation , Cell Proliferation , Drosophila , Epithelial Cells/cytology , Epithelial Cells/metabolism , Eye/cytology , Eye/embryology , Gene Expression Regulation, Developmental , Humans , Mice , Transcriptional Coactivator with PDZ-Binding Motif Proteins , YAP-Signaling Proteins
4.
J Am Soc Nephrol ; 29(1): 335-348, 2018 01.
Article in English | MEDLINE | ID: mdl-29093028

ABSTRACT

Magnesium (Mg2+) homeostasis is critical for metabolism. However, the genetic determinants of the renal handling of Mg2+, which is crucial for Mg2+ homeostasis, and the potential influence on metabolic traits in the general population are unknown. We obtained plasma and urine parameters from 9099 individuals from seven cohorts, and conducted a genome-wide meta-analysis of Mg2+ homeostasis. We identified two loci associated with urinary magnesium (uMg), rs3824347 (P=4.4×10-13) near TRPM6, which encodes an epithelial Mg2+ channel, and rs35929 (P=2.1×10-11), a variant of ARL15, which encodes a GTP-binding protein. Together, these loci account for 2.3% of the variation in 24-hour uMg excretion. In human kidney cells, ARL15 regulated TRPM6-mediated currents. In zebrafish, dietary Mg2+ regulated the expression of the highly conserved ARL15 ortholog arl15b, and arl15b knockdown resulted in renal Mg2+ wasting and metabolic disturbances. Finally, ARL15 rs35929 modified the association of uMg with fasting insulin and fat mass in a general population. In conclusion, this combined observational and experimental approach uncovered a gene-environment interaction linking Mg2+ deficiency to insulin resistance and obesity.


Subject(s)
ADP-Ribosylation Factors/genetics , Homeostasis/genetics , Kidney/metabolism , Magnesium/blood , Magnesium/urine , TRPM Cation Channels/genetics , Adiposity/genetics , Animals , GTP-Binding Proteins/genetics , Gene-Environment Interaction , Genome-Wide Association Study , Humans , Insulin/blood , Insulin Resistance/genetics , Magnesium/administration & dosage , Mice , Obesity/genetics , Phenotype , Polymorphism, Single Nucleotide , RNA, Messenger/metabolism , Zebrafish , Zebrafish Proteins/genetics
5.
Biochem Soc Trans ; 46(6): 1463-1473, 2018 12 17.
Article in English | MEDLINE | ID: mdl-30464047

ABSTRACT

Retinitis pigmentosa (RP) is the leading cause of inherited blindness. RP is a genetically heterogeneous disorder, with more than 100 different causal genes identified in patients. Central to disease pathogenesis is the progressive loss of retinal photoreceptors. Photoreceptors are specialised sensory neurons that exhibit a complex and highly dynamic morphology. The highly polarised and elaborated architecture of photoreceptors requires precise regulation of numerous cytoskeletal elements. In recent years, significant work has been placed on investigating the role of microtubules (specifically, the acetylated microtubular axoneme of the photoreceptor connecting cilium) and their role in normal photoreceptor function. This has been driven by the emerging field of ciliopathies, human diseases arising from mutations in genes required for cilia formation or function, of which RP is a frequently reported phenotype. Recent studies have highlighted an intimate relationship between cilia and the actin cystoskeleton. This review will focus on the role of actin in photoreceptors, examining the connection between actin dysregulation in RP.


Subject(s)
Photoreceptor Cells, Vertebrate/metabolism , Retinitis Pigmentosa/metabolism , Actins/metabolism , Animals , Cilia/metabolism , Humans , Retina/metabolism
6.
Am J Hum Genet ; 94(6): 884-90, 2014 Jun 05.
Article in English | MEDLINE | ID: mdl-24814193

ABSTRACT

Nephrotic syndrome (NS) is a genetically heterogeneous group of diseases that are divided into steroid-sensitive NS (SSNS) and steroid-resistant NS (SRNS). SRNS inevitably leads to end-stage kidney disease, and no curative treatment is available. To date, mutations in more than 24 genes have been described in Mendelian forms of SRNS; however, no Mendelian form of SSNS has been described. To identify a genetic form of SSNS, we performed homozygosity mapping, whole-exome sequencing, and multiplex PCR followed by next-generation sequencing. We thereby detected biallelic mutations in EMP2 (epithelial membrane protein 2) in four individuals from three unrelated families affected by SRNS or SSNS. We showed that EMP2 exclusively localized to glomeruli in the kidney. Knockdown of emp2 in zebrafish resulted in pericardial effusion, supporting the pathogenic role of mutated EMP2 in human NS. At the cellular level, we showed that knockdown of EMP2 in podocytes and endothelial cells resulted in an increased amount of CAVEOLIN-1 and decreased cell proliferation. Our data therefore identify EMP2 mutations as causing a recessive Mendelian form of SSNS.


Subject(s)
Membrane Glycoproteins/genetics , Mutation , Nephrotic Syndrome/genetics , Alleles , Animals , Caveolin 1/metabolism , Cell Proliferation , Child, Preschool , Chromosome Mapping , Endothelial Cells/pathology , Gene Expression Regulation , Genetic Loci , Homozygote , Humans , Infant , Kidney/pathology , Kidney Failure, Chronic/etiology , Kidney Failure, Chronic/genetics , Membrane Glycoproteins/metabolism , Nephrotic Syndrome/complications , Zebrafish/embryology , Zebrafish/genetics
7.
Am J Hum Genet ; 93(5): 915-25, 2013 Nov 07.
Article in English | MEDLINE | ID: mdl-24140113

ABSTRACT

Intraflagellar transport (IFT) depends on two evolutionarily conserved modules, subcomplexes A (IFT-A) and B (IFT-B), to drive ciliary assembly and maintenance. All six IFT-A components and their motor protein, DYNC2H1, have been linked to human skeletal ciliopathies, including asphyxiating thoracic dystrophy (ATD; also known as Jeune syndrome), Sensenbrenner syndrome, and Mainzer-Saldino syndrome (MZSDS). Conversely, the 14 subunits in the IFT-B module, with the exception of IFT80, have unknown roles in human disease. To identify additional IFT-B components defective in ciliopathies, we independently performed different mutation analyses: candidate-based sequencing of all IFT-B-encoding genes in 1,467 individuals with a nephronophthisis-related ciliopathy or whole-exome resequencing in 63 individuals with ATD. We thereby detected biallelic mutations in the IFT-B-encoding gene IFT172 in 12 families. All affected individuals displayed abnormalities of the thorax and/or long bones, as well as renal, hepatic, or retinal involvement, consistent with the diagnosis of ATD or MZSDS. Additionally, cerebellar aplasia or hypoplasia characteristic of Joubert syndrome was present in 2 out of 12 families. Fibroblasts from affected individuals showed disturbed ciliary composition, suggesting alteration of ciliary transport and signaling. Knockdown of ift172 in zebrafish recapitulated the human phenotype and demonstrated a genetic interaction between ift172 and ift80. In summary, we have identified defects in IFT172 as a cause of complex ATD and MZSDS. Our findings link the group of skeletal ciliopathies to an additional IFT-B component, IFT172, similar to what has been shown for IFT-A.


Subject(s)
Cerebellar Ataxia/genetics , Ellis-Van Creveld Syndrome/genetics , Intracellular Signaling Peptides and Proteins/genetics , Retinitis Pigmentosa/genetics , Alleles , Amino Acid Sequence , Animals , Asian People/genetics , Bone and Bones/abnormalities , Bone and Bones/metabolism , Bone and Bones/pathology , Cerebellar Ataxia/pathology , Craniosynostoses/genetics , Craniosynostoses/pathology , Cytoplasmic Dyneins/genetics , Cytoplasmic Dyneins/metabolism , Dyneins/genetics , Dyneins/metabolism , Ectodermal Dysplasia/genetics , Ectodermal Dysplasia/pathology , Ellis-Van Creveld Syndrome/pathology , Epistasis, Genetic , Female , Fibroblasts/pathology , Gene Knockdown Techniques , Humans , Intracellular Signaling Peptides and Proteins/metabolism , Kidney Diseases, Cystic/genetics , Kidney Diseases, Cystic/pathology , Male , Molecular Sequence Data , Mutation , Phenotype , Retinitis Pigmentosa/pathology , White People/genetics , Zebrafish/genetics
8.
Am J Hum Genet ; 93(4): 672-86, 2013 Oct 03.
Article in English | MEDLINE | ID: mdl-24094744

ABSTRACT

Primary ciliary dyskinesia (PCD) is caused when defects of motile cilia lead to chronic airway infections, male infertility, and situs abnormalities. Multiple causative PCD mutations account for only 65% of cases, suggesting that many genes essential for cilia function remain to be discovered. By using zebrafish morpholino knockdown of PCD candidate genes as an in vivo screening platform, we identified c21orf59, ccdc65, and c15orf26 as critical for cilia motility. c21orf59 and c15orf26 knockdown in zebrafish and planaria blocked outer dynein arm assembly, and ccdc65 knockdown altered cilia beat pattern. Biochemical analysis in Chlamydomonas revealed that the C21orf59 ortholog FBB18 is a flagellar matrix protein that accumulates specifically when cilia motility is impaired. The Chlamydomonas ida6 mutant identifies CCDC65/FAP250 as an essential component of the nexin-dynein regulatory complex. Analysis of 295 individuals with PCD identified recessive truncating mutations of C21orf59 in four families and CCDC65 in two families. Similar to findings in zebrafish and planaria, mutations in C21orf59 caused loss of both outer and inner dynein arm components. Our results characterize two genes associated with PCD-causing mutations and elucidate two distinct mechanisms critical for motile cilia function: dynein arm assembly for C21orf59 and assembly of the nexin-dynein regulatory complex for CCDC65.


Subject(s)
Ciliary Motility Disorders/genetics , Glycoproteins/genetics , Kartagener Syndrome/genetics , Zebrafish/genetics , Animals , Chlamydomonas/genetics , Cilia/genetics , DNA Mutational Analysis/methods , Dyneins/genetics , Female , Humans , Male , Mutation , Open Reading Frames , Planarians/genetics , Proteome/genetics
9.
Am J Hum Genet ; 93(2): 336-45, 2013 Aug 08.
Article in English | MEDLINE | ID: mdl-23891469

ABSTRACT

Defects of motile cilia cause primary ciliary dyskinesia (PCD), characterized by recurrent respiratory infections and male infertility. Using whole-exome resequencing and high-throughput mutation analysis, we identified recessive biallelic mutations in ZMYND10 in 14 families and mutations in the recently identified LRRC6 in 13 families. We show that ZMYND10 and LRRC6 interact and that certain ZMYND10 and LRRC6 mutations abrogate the interaction between the LRRC6 CS domain and the ZMYND10 C-terminal domain. Additionally, ZMYND10 and LRRC6 colocalize with the centriole markers SAS6 and PCM1. Mutations in ZMYND10 result in the absence of the axonemal protein components DNAH5 and DNALI1 from respiratory cilia. Animal models support the association between ZMYND10 and human PCD, given that zmynd10 knockdown in zebrafish caused ciliary paralysis leading to cystic kidneys and otolith defects and that knockdown in Xenopus interfered with ciliogenesis. Our findings suggest that a cytoplasmic protein complex containing ZMYND10 and LRRC6 is necessary for motile ciliary function.


Subject(s)
Cilia/genetics , Kartagener Syndrome/genetics , Proteins/genetics , Respiratory System/metabolism , Tumor Suppressor Proteins/genetics , Animals , Autoantigens/genetics , Autoantigens/metabolism , Axonemal Dyneins/genetics , Axonemal Dyneins/metabolism , Biomarkers/metabolism , Cell Cycle Proteins/genetics , Cell Cycle Proteins/metabolism , Cilia/metabolism , Cilia/pathology , Cytoskeletal Proteins , Exome , Gene Expression Regulation , High-Throughput Nucleotide Sequencing , Humans , Kartagener Syndrome/metabolism , Kartagener Syndrome/pathology , Male , Microtubule-Associated Proteins/genetics , Microtubule-Associated Proteins/metabolism , Mutation , Pedigree , Protein Binding , Protein Structure, Tertiary , Proteins/metabolism , Rats , Respiratory System/pathology , Tumor Suppressor Proteins/metabolism , Xenopus laevis/genetics , Xenopus laevis/metabolism , Zebrafish/genetics , Zebrafish/metabolism
10.
Am J Respir Crit Care Med ; 189(6): 707-17, 2014 Mar 15.
Article in English | MEDLINE | ID: mdl-24568568

ABSTRACT

RATIONALE: Primary ciliary dyskinesia (PCD) is a genetically heterogeneous recessive disorder of motile cilia, but the genetic cause is not defined for all patients with PCD. OBJECTIVES: To identify disease-causing mutations in novel genes, we performed exome sequencing, follow-up characterization, mutation scanning, and genotype-phenotype studies in patients with PCD. METHODS: Whole-exome sequencing was performed using NimbleGen capture and Illumina HiSeq sequencing. Sanger-based sequencing was used for mutation scanning, validation, and segregation analysis. MEASUREMENTS AND MAIN RESULTS: We performed exome sequencing on an affected sib-pair with normal ultrastructure in more than 85% of cilia. A homozygous splice-site mutation was detected in RSPH1 in both siblings; parents were carriers. Screening RSPH1 in 413 unrelated probands, including 325 with PCD and 88 with idiopathic bronchiectasis, revealed biallelic loss-of-function mutations in nine additional probands. Five affected siblings of probands in RSPH1 families harbored the familial mutations. The 16 individuals with RSPH1 mutations had some features of PCD; however, nasal nitric oxide levels were higher than in patients with PCD with other gene mutations (98.3 vs. 20.7 nl/min; P < 0.0003). Additionally, individuals with RSPH1 mutations had a lower prevalence (8 of 16) of neonatal respiratory distress, and later onset of daily wet cough than typical for PCD, and better lung function (FEV1), compared with 75 age- and sex-matched PCD cases (73.0 vs. 61.8, FEV1 % predicted; P = 0.043). Cilia from individuals with RSPH1 mutations had normal beat frequency (6.1 ± Hz at 25°C), but an abnormal, circular beat pattern. CONCLUSIONS: The milder clinical disease and higher nasal nitric oxide in individuals with biallelic mutations in RSPH1 provides evidence of a unique genotype-phenotype relationship in PCD, and suggests that mutations in RSPH1 may be associated with residual ciliary function.


Subject(s)
DNA-Binding Proteins/genetics , Kartagener Syndrome/genetics , Mutation , Adolescent , Adult , Child , Cilia/physiology , DNA Mutational Analysis , Exome , Female , Genetic Association Studies , Genetic Markers , Genetic Testing , Homozygote , Humans , Kartagener Syndrome/physiopathology , Linear Models , Male , Middle Aged , Nasal Mucosa/physiology , Sequence Analysis, DNA , Young Adult
11.
J Am Soc Nephrol ; 25(11): 2573-83, 2014 Nov.
Article in English | MEDLINE | ID: mdl-24722439

ABSTRACT

Nephronophthisis-related ciliopathies (NPHP-RCs) are developmental and degenerative kidney diseases that are frequently associated with extrarenal pathologies such as retinal degeneration, obesity, and intellectual disability. We recently identified mutations in a gene encoding the centrosomal protein SDCCAG8 as causing NPHP type 10 in humans. To study the role of Sdccag8 in disease pathogenesis, we generated a Sdccag8 gene-trap mouse line. Homozygous Sdccag8(gt/gt) mice lacked the wild-type Sdccag8 transcript and protein, and recapitulated the human phenotypes of NPHP and retinal degeneration. These mice exhibited early onset retinal degeneration that was associated with rhodopsin mislocalization in the photoreceptors and reduced cone cell numbers, and led to progressive loss of vision. By contrast, renal histologic changes occurred later, and no global ciliary defects were observed in the kidneys. Instead, renal pathology was associated with elevated levels of DNA damage response signaling activity. Cell culture studies confirmed the aberrant activation of DNA damage response in Sdccag8(gt/gt)-derived cells, characterized by elevated levels of γH2AX and phosphorylated ATM and cell cycle profile abnormalities. Our analysis of Sdccag8(gt/gt) mice indicates that the pleiotropic phenotypes in these mice may arise through multiple tissue-specific disease mechanisms.


Subject(s)
Autoantigens/genetics , DNA Damage/physiology , Kidney Diseases, Cystic/genetics , Neoplasm Proteins/genetics , Signal Transduction/genetics , Animals , Cell Line , Cell Line, Transformed , Cilia/pathology , Embryonic Stem Cells/cytology , Fibroblasts/cytology , Fibroblasts/physiology , Green Fluorescent Proteins/genetics , Kidney/pathology , Kidney Diseases, Cystic/pathology , Kidney Diseases, Cystic/physiopathology , Mice, Transgenic , Photoreceptor Cells, Vertebrate/pathology , S Phase/physiology
12.
Kidney Int ; 85(4): 880-7, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24257694

ABSTRACT

Rare single-gene disorders cause chronic disease. However, half of the 6000 recessive single gene causes of disease are still unknown. Because recessive disease genes can illuminate, at least in part, disease pathomechanism, their identification offers direct opportunities for improved clinical management and potentially treatment. Rare diseases comprise the majority of chronic kidney disease (CKD) in children but are notoriously difficult to diagnose. Whole-exome resequencing facilitates identification of recessive disease genes. However, its utility is impeded by the large number of genetic variants detected. We here overcome this limitation by combining homozygosity mapping with whole-exome resequencing in 10 sib pairs with a nephronophthisis-related ciliopathy, which represents the most frequent genetic cause of CKD in the first three decades of life. In 7 of 10 sibships with a histologic or ultrasonographic diagnosis of nephronophthisis-related ciliopathy, we detect the causative gene. In six sibships, we identify mutations of known nephronophthisis-related ciliopathy genes, while in two additional sibships we found mutations in the known CKD-causing genes SLC4A1 and AGXT as phenocopies of nephronophthisis-related ciliopathy. Thus, whole-exome resequencing establishes an efficient, noninvasive approach towards early detection and causation-based diagnosis of rare kidney diseases. This approach can be extended to other rare recessive disorders, thereby providing accurate diagnosis and facilitating the study of disease mechanisms.


Subject(s)
Genetic Testing/methods , Kidney Diseases, Cystic/diagnosis , Kidney Diseases, Cystic/genetics , Adolescent , Adult , DNA Mutational Analysis , Early Diagnosis , Exome , Genes, Recessive , Humans , Infant , Male , Mutation , Phenotype , Young Adult
13.
J Am Soc Nephrol ; 24(6): 967-77, 2013 May.
Article in English | MEDLINE | ID: mdl-23661805

ABSTRACT

Nephronophthisis (NPHP)-related ciliopathies are recessive, single-gene disorders that collectively make up the most common genetic cause of CKD in the first three decades of life. Mutations in 1 of the 15 known NPHP genes explain less than half of all cases with this phenotype, however, and the recently identified genetic causes are exceedingly rare. As a result, a strategy to identify single-gene causes of NPHP-related ciliopathies in single affected families is needed. Although whole-exome resequencing facilitates the identification of disease genes, the large number of detected genetic variants hampers its use. Here, we overcome this limitation by combining homozygosity mapping with whole-exome resequencing in a sibling pair with an NPHP-related ciliopathy. Whole-exome capture revealed a homozygous splice acceptor site mutation (c.698G>T) in the renal Mg(2+) transporter SLC41A1. This mutation resulted in skipping of exon 6 of SLC41A1, resulting in an in-frame deletion of a transmembrane helix. Transfection of cells with wild-type or mutant SLC41A1 revealed that deletion of exon 6 completely blocks the Mg(2+) transport function of SLC41A1. Furthermore, in normal human kidney tissue, endogenous SLC41A1 specifically localized to renal tubules situated at the corticomedullary boundary, consistent with the region of cystogenesis observed in NPHP and related ciliopathies. Last, morpholino-mediated knockdown of slc41a1 expression in zebrafish resulted in ventral body curvature, hydrocephalus, and cystic kidneys, similar to the effects of knocking down other NPHP genes. Taken together, these data suggest that defects in the maintenance of renal Mg(2+) homeostasis may lead to tubular defects that result in a phenotype similar to NPHP.


Subject(s)
Cation Transport Proteins/genetics , Cation Transport Proteins/metabolism , Kidney Diseases, Cystic/congenital , Magnesium/metabolism , Animals , Child , Child, Preschool , Dogs , Exons/genetics , Female , Genes, Recessive , HEK293 Cells , Heterozygote , Homozygote , Humans , Kidney/metabolism , Kidney/pathology , Kidney Diseases, Cystic/genetics , Kidney Diseases, Cystic/metabolism , Kidney Diseases, Cystic/pathology , Madin Darby Canine Kidney Cells , Male , Membrane Proteins/genetics , Membrane Proteins/metabolism , Mutation, Missense , Pedigree , Zebrafish , Zebrafish Proteins
14.
J Cell Sci ; 124(Pt 5): 718-26, 2011 Mar 01.
Article in English | MEDLINE | ID: mdl-21285245

ABSTRACT

Ciliopathies represent a newly emerging group of human diseases that share a common etiology resulting from dysfunction of the cilium or centrosome. The gene encoding the retinitis pigmentosa 2 protein (RP2) is mutated in X-linked retinitis pigmentosa. RP2 localizes to the ciliary base and this requires the dual acylation of the N-terminus, but the precise mechanism by which RP2 is trafficked to the cilia is unknown. Here we have characterized an interaction between RP2 and Importin ß2 (transportin-1), a member of the Importin-ß family that regulates nuclear-cytoplasmic shuttling. We demonstrate that Importin ß2 is necessary for localization of RP2 to the primary cilium because ablation of Importin ß2 by shRNA blocks entry both of endogenous and exogenous RP2 to the cilium. Furthermore, we identify two distinct binding sites of RP2, which interact independently with Importin ß2. One binding site is a nuclear localization signal (NLS)-like sequence that is located at the N-terminus of RP2 and the other is an M9-like sequence within the tubulin folding cofactor C (TBCC) domain. Mutation of the NLS-like consensus sequence did not abolish localization of RP2 to cilia, suggesting that the sequence is not essential for RP2 ciliary targeting. Interestingly, we found that several missense mutations that cause human disease fall within the M9-like sequence of RP2 and these mutations block entry of RP2 into the cilium, as well as its interaction with Importin ß2. Together, this work further highlights a role of Importin ß2 in regulation of the entry of RP2 and other proteins into the ciliary compartment.


Subject(s)
Cilia/metabolism , Eye Proteins/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Membrane Proteins/metabolism , beta Karyopherins/metabolism , Amino Acid Sequence , Animals , Binding Sites , Cell Line , Centrosome/metabolism , Cilia/ultrastructure , Epithelial Cells/metabolism , Epithelial Cells/ultrastructure , Eye Proteins/genetics , GTP-Binding Proteins , Gene Knockdown Techniques , Humans , Intracellular Signaling Peptides and Proteins/genetics , Membrane Proteins/genetics , Molecular Sequence Data , Multiprotein Complexes/metabolism , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , beta Karyopherins/genetics
15.
J Biol Chem ; 286(32): 28276-86, 2011 Aug 12.
Article in English | MEDLINE | ID: mdl-21685394

ABSTRACT

Primary cilia regulate polarized protein trafficking in photoreceptors, which are dynamic and highly compartmentalized sensory neurons of retina. The ciliary protein Cep290 modulates cilia formation and is frequently mutated in syndromic and non-syndromic photoreceptor degeneration. However, the underlying mechanism of associated retinopathy is unclear. Using the Cep290 mutant mouse rd16 (retinal degeneration 16), we show that Cep290-mediated photoreceptor degeneration is associated with aberrant accumulation of its novel interacting partner Rkip (Raf-1 kinase inhibitory protein). This effect is phenocopied by morpholino-mediated depletion of cep290 in zebrafish. We further demonstrate that ectopic accumulation of Rkip leads to defective cilia formation in zebrafish and cultured cells, an effect mediated by its interaction with the ciliary GTPase Rab8A. Our data suggest that Rkip prevents cilia formation and is associated with Cep290-mediated photoreceptor degeneration. Furthermore, our results indicate that preventing accumulation of Rkip could potentially ameliorate such degeneration.


Subject(s)
Antigens, Neoplasm/metabolism , Ciliary Motility Disorders/metabolism , Microtubule-Associated Proteins/metabolism , Neoplasm Proteins/metabolism , Nuclear Proteins/metabolism , Phosphatidylethanolamine Binding Protein/metabolism , Retinal Degeneration/metabolism , Zebrafish Proteins/metabolism , Animals , Antigens, Neoplasm/genetics , Cell Cycle Proteins , Chlorocebus aethiops , Cilia/genetics , Cilia/metabolism , Cilia/pathology , Ciliary Motility Disorders/genetics , Ciliary Motility Disorders/pathology , Cytoskeletal Proteins , HEK293 Cells , Humans , Mice , Microtubule-Associated Proteins/genetics , Neoplasm Proteins/genetics , Nuclear Proteins/genetics , Phosphatidylethanolamine Binding Protein/genetics , Retinal Degeneration/genetics , Retinal Degeneration/pathology , Zebrafish , Zebrafish Proteins/genetics , rab GTP-Binding Proteins/genetics , rab GTP-Binding Proteins/metabolism
16.
J Med Genet ; 48(2): 105-16, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21068128

ABSTRACT

BACKGROUND: Nephronophthisis associated ciliopathies (NPHP-AC) comprise a group of autosomal recessive cystic kidney diseases that includes nephronophthisis (NPHP), Senior-Loken syndrome (SLS), Joubert syndrome (JBTS), and Meckel-Gruber syndrome (MKS). To date, causative mutations in NPHP-AC have been described for 18 different genes, rendering mutation analysis tedious and expensive. To overcome the broad genetic locus heterogeneity, a strategy of DNA pooling with consecutive massively parallel resequencing (MPR) was devised. METHODS: In 120 patients with severe NPHP-AC phenotypes, five pools of genomic DNA with 24 patients each were prepared which were used as templates in order to PCR amplify all 376 exons of 18 NPHP-AC genes (NPHP1, INVS, NPHP3, NPHP4, IQCB1, CEP290, GLIS2, RPGRIP1L, NEK8, TMEM67, INPP5E, TMEM216, AHI1, ARL13B, CC2D2A, TTC21B, MKS1, and XPNPEP3). PCR products were then subjected to MPR on an Illumina Genome-Analyser and mutations were subsequently assigned to their respective mutation carrier via CEL I endonuclease based heteroduplex screening and confirmed by Sanger sequencing. RESULTS: For proof of principle, DNA from patients with known mutations was used and detection of 22 out of 24 different alleles (92% sensitivity) was demonstrated. MPR led to the molecular diagnosis in 30/120 patients (25%) and 54 pathogenic mutations (27 novel) were identified in seven different NPHP-AC genes. Additionally, in 24 patients only single heterozygous variants of unknown significance were found. CONCLUSIONS: The combined approach of DNA pooling followed by MPR strongly facilitates mutation analysis in broadly heterogeneous single gene disorders. The lack of mutations in 75% of patients in this cohort indicates further extensive heterogeneity in NPHP-AC.


Subject(s)
Cilia/genetics , DNA Mutational Analysis/methods , Heteroduplex Analysis/methods , Kidney Diseases, Cystic/genetics , Cilia/pathology , Humans , Nucleic Acid Amplification Techniques , Polymerase Chain Reaction
17.
Nat Cell Biol ; 5(2): 137-42, 2003 Feb.
Article in English | MEDLINE | ID: mdl-12545177

ABSTRACT

Tight junctions help establish polarity in mammalian epithelia by forming a physical barrier that separates apical and basolateral membranes. Two evolutionarily conserved multi-protein complexes, Crumbs (Crb)-PALS1 (Stardust)-PATJ (DiscsLost) and Cdc42-Par6-Par3-atypical protein kinase C (aPKC), have been implicated in the assembly of tight junctions and in polarization of Drosophila melanogaster epithelia. Here we identify a biochemical and functional link between these two complexes that is mediated by Par6 and PALS1 (proteins associated with Lin7). The interaction between Par6 and PALS1 is direct, requires the amino terminus of PALS1 and the PDZ domain of Par6, and is regulated by Cdc42-GTP. The transmembrane protein Crb can recruit wild-type Par6, but not Par6 with a mutated PDZ domain, to the cell surface. Expression of dominant-negative PALS1-associated tight junction protein (PATJ) in MDCK cells results in mis-localization of PALS1, members of the Par3-Par6-aPKC complex and the tight junction marker, ZO-1. Similarly, overexpression of Par6 in MDCK cells inhibits localization of PALS1 to the tight junction. Our data highlight a previously unrecognized link between protein complexes that are essential for epithelial polarity and formation of tight junctions.


Subject(s)
Cell Membrane/metabolism , Cell Polarity , Epithelial Cells/metabolism , Eye Proteins , Tight Junctions/metabolism , Animals , Binding Sites , Cell Line , Epithelial Cells/cytology , Epithelial Cells/ultrastructure , Genes, Reporter , Humans , Macromolecular Substances , Membrane Glycoproteins/metabolism , Membrane Proteins/genetics , Membrane Proteins/metabolism , Microscopy, Fluorescence , Protein Kinase C/metabolism , Protein Structure, Tertiary , Proteins/metabolism , Recombinant Fusion Proteins/metabolism , Tight Junction Proteins
18.
Nephron Exp Nephrol ; 118(1): e9-14, 2011.
Article in English | MEDLINE | ID: mdl-21071979

ABSTRACT

An emerging group of human genetic diseases termed 'ciliopathies' are caused by dysfunction of two functionally and physically associated organelles, the centrosome and cilium. These organelles are central to perception of the physical environment through detection of a diverse variety of extracellular signals such as growth factors, chemicals, light and fluid flow. Many of the described ciliopathies display multi-organ involvement, with renal and retina being the most commonly affected. Nephronophthisis is a recessive disorder of the kidney that is the leading cause of end-stage renal failure in children. Through positional cloning, many of the causative mutations have been mapped to genes involved in centrosome and cilia function. In this review, we discuss the identified causative mutations that give rise to nephronophthisis and how these are related to the disease etiology in both the kidney and other organs.


Subject(s)
Cilia/physiology , Adaptor Proteins, Signal Transducing/genetics , Centrosome/physiology , Cytoskeletal Proteins , Humans , Kidney Diseases, Cystic/congenital , Kidney Diseases, Cystic/genetics , Kidney Diseases, Cystic/physiopathology , Membrane Proteins/genetics , Mutation/genetics
19.
Cells ; 10(11)2021 11 07.
Article in English | MEDLINE | ID: mdl-34831289

ABSTRACT

Cholesterol dysregulation has been implicated in age-related macular degeneration (AMD), the most common cause of visual impairment in the elderly. The 18 KDa translocator protein (TSPO) is a mitochondrial outer membrane protein responsible for transporting cholesterol from the mitochondrial outer membrane to the inner membrane. TSPO is highly expressed in retinal pigment epithelial (RPE) cells, and TSPO ligands have shown therapeutic potential for the treatment of AMD. Here, we characterized retinal pathology of Tspo knockout (KO) mice using histological, immunohistochemical, biochemical and molecular biological approaches. We found that Tspo KO mice had normal retinal morphology (by light microscopy) but showed elevated levels of cholesterol, triglycerides and phospholipids with perturbed cholesterol efflux in the RPE cells of Tspo KO mice. Expression of cholesterol-associated genes (Nr1h3, Abca1, Abcg1, Cyp27a1 and Cyp46a1) was significantly downregulated, and production of pro-inflammatory cytokines was markedly increased in Tspo KO retinas. Furthermore, microglial activation was also observed in Tspo KO mouse retinas. These findings provide new insights into the function of TSPO in the retina and may aid in the design of new therapeutic strategies for the treatment of AMD.


Subject(s)
Receptors, GABA/genetics , Animals , Biological Transport , Cholesterol/metabolism , Choroid/metabolism , Cytokines/metabolism , Gene Deletion , Gene Expression Regulation , Homeostasis/genetics , Inflammation/genetics , Inflammation Mediators/metabolism , Lipid Metabolism , Mice, Knockout , Microglia/metabolism , Microglia/pathology , Receptors, GABA/metabolism , Retina/metabolism , Retina/pathology , Retinal Pigment Epithelium/metabolism
20.
Curr Biol ; 16(12): 1211-6, 2006 Jun 20.
Article in English | MEDLINE | ID: mdl-16782012

ABSTRACT

Nonmotile cilia on olfactory sensory neurons (OSNs) compartmentalize signaling molecules, including odorant receptors and cyclic nucleotide-gated (CNG) channels, allowing for efficient, spatially confined responses to sensory stimuli . Little is known about the mechanisms of the ciliary targeting of olfactory CNG channels, composed of three subunits: CNGA2, CNGA4, and CNGB1b . Recent reports suggest that subunit composition of the retinal CNG channel influences localization, leading to disease . However, the mechanistic role of subunits in properly targeting native olfactory CNG channels remains unclear. Here, we show that heteromeric assembly with CNGB1b, containing a critical carboxy-terminal motif (RVxP), is required for ciliary trafficking of olfactory CNG channels. Movement of proteins within the cilia is governed by intraflagellar transport (IFT), a process that facilitates bidirectional movement of cargo along microtubules. Work in C. elegans has established that heterotrimeric and homodimeric kinesin-2 family members play a critical role in anterograde transport . In mammalian systems, the heterotrimeric KIF3a/KIF3b/KAP-3 complex plays a clear role in IFT; however, no role has been established for KIF17, the mammalian homolog of OSM-3 . Here, we demonstrate that KIF17 is required for olfactory CNG channel targeting, providing novel insights into mechanisms of mammalian ciliary transport.


Subject(s)
Cilia/metabolism , Ion Channels/metabolism , Kinesins/metabolism , Molecular Motor Proteins/metabolism , Protein Subunits/metabolism , Amino Acid Sequence , Animals , Cell Line , Cilia/ultrastructure , Cyclic Nucleotide-Gated Cation Channels , Dogs , Ion Channels/chemistry , Luminescent Proteins/analysis , Molecular Sequence Data , Protein Transport , Sequence Alignment
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