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1.
NMR Biomed ; 34(3): e4441, 2021 03.
Article in English | MEDLINE | ID: mdl-33354828

ABSTRACT

Electromagnetic simulations are an important tool for the safety assessment of RF coils. They are a useful resource for MRI RF coil designers, especially when complemented with experimental measurements and testing using physical phantoms. Regular-shaped (spherical/cylindrical) homogeneous phantoms are the MRI standard for RF testing but are somewhat inaccurate when compared with anthropomorphic anatomies, especially at high frequencies. In this work, using a recently developed anthropomorphic heterogeneous human head phantom, studies were performed to analyze the scattering parameters (S-parameters) and the electric and magnetic field distributions using (1) the B1+ field mapping method on a 7 T human MRI scanner and (2) numerical full-wave electromagnetic simulations. All studies used the following: a recently developed six-compartment refillable 3D-printed anthropomorphic head phantom (developed from MRI scans obtained in vivo), where the phantom itself is filled in its entirety with either heterogeneous loading, or homogeneous brain or water loading, in vivo imaging, and a commercial homogeneous spherical water phantom. Our results determined that the calculated S-parameters for all the anthropomorphic head phantom models were comparable to the model that is based on the volunteer (within 17% difference of the reflection coefficient value) but differed for the commercial homogeneous spherical water phantom (within 45% difference). The experimentally measured B1+ field maps of the anthropomorphic heterogeneous and homogeneous brain head phantoms were most comparable to the in vivo measured values. The numerical simulations also show that both the anthropomorphic homogeneous water and brain phantom models were less accurate in terms of electric field intensities/distributions when compared with the segmented in-vivo-based head model and the anthropomorphic heterogeneous head phantom model. The presented data highlights the differences between the physical phantoms/phantom models, and the in vivo measurements/segmented in-vivo-based head model. The results demonstrate the usefulness of 3D-printed anthropomorphic phantoms for RF coil evaluation and testing.


Subject(s)
Electromagnetic Fields , Magnetic Resonance Imaging , Phantoms, Imaging , Electricity , Head , Humans , Numerical Analysis, Computer-Assisted
2.
Am J Geriatr Psychiatry ; 28(5): 578-582, 2020 05.
Article in English | MEDLINE | ID: mdl-31892441

ABSTRACT

OBJECTIVE: We sought to determine whether the aspects of white matter connectivity implicated in major depression also relate to mild depressive symptoms in family dementia caregivers (dCGs). METHODS: Forty-one dCGs (average age=69 years, standard deviation=6.4) underwent a 7 Tesla 64-direction (12-minute) diffusion-weighted imaging sequence. We compared the fractional anisotropy (FA) of 11 white matter features between dCGs with (n=20) and without (n=21) depressive symptoms (Patient Health Questionnaire-9 scores ≥5). RESULTS: Caregivers reporting depression symptoms had lower FA in tracts connecting to the posterior cingulate cortex (Cohen's d = -0.9) and connecting dorsolateral prefrontal with rostral cingulate regions (Cohen's d = -1.2). CONCLUSIONS: Posterior cingulate and dorsolateral prefrontal-to-rostral cingulate white matter, implicated in prior studies of major depression, appear relevant to mild depression in dCGs.


Subject(s)
Caregivers/psychology , Depression/pathology , Gyrus Cinguli/pathology , Neural Pathways/pathology , White Matter/pathology , Aged , Dementia/therapy , Depression/diagnostic imaging , Diffusion Magnetic Resonance Imaging , Diffusion Tensor Imaging , Female , Humans , Male , Middle Aged , Psychiatric Status Rating Scales , Registries , White Matter/diagnostic imaging
3.
Adv Exp Med Biol ; 1192: 95-115, 2019.
Article in English | MEDLINE | ID: mdl-31705491

ABSTRACT

Cerebral small vessel disease is associated with late-life depression, cognitive impairment, executive dysfunction, distress, and loss of life for older adults. Late-life depression is becoming a substantial public health burden, and a considerable number of older adults presenting to primary care have significant clinical depression. Even though white matter hyperintensities are linked with small vessel disease, white matter hyperintensities are nonspecific to small vessel disease and can co-occur with other brain diseases. Advanced neuroimaging techniques at the ultrahigh field magnetic resonance imaging are enabling improved characterization, identification of cerebral small vessel disease and are elucidating some of the mechanisms that associate small vessel disease with late-life depression.


Subject(s)
Aging , Cerebral Small Vessel Diseases/diagnostic imaging , Magnetic Resonance Imaging/methods , Neuroimaging/methods , Aged , Brain , Depression , Humans , White Matter
4.
Am J Geriatr Psychiatry ; 26(6): 690-699, 2018 06.
Article in English | MEDLINE | ID: mdl-29628321

ABSTRACT

OBJECTIVES: Hippocampal hyperactivation marks preclinical dementia pathophysiology, potentially due to differences in the connectivity of specific medial temporal lobe structures. Our aims were to characterize the resting-state functional connectivity of medial temporal lobe sub-structures in older adults, and evaluate whether specific substructural (rather than global) functional connectivity relates to memory function. METHODS: In 15 adults (mean age: 69 years), we evaluated the resting state functional connectivity of medial temporal lobe substructures: dentate/Cornu Ammonis (CA) 4, CA1, CA2/3, subiculum, the molecular layer, entorhinal cortex, and parahippocampus. We used 7-Tesla susceptibility weighted imaging and magnetization-prepared rapid gradient echo sequences to segment substructures of the hippocampus, which were used as structural seeds for examining functional connectivity in a resting BOLD sequence. We then assessed correlations between functional connectivity with memory performance (short and long delay free recall on the California Verbal Learning Test [CVLT]). RESULTS: All the seed regions had significant connectivity within the temporal lobe (including the fusiform, temporal, and lingual gyri). The left CA1 was the only seed with significant functional connectivity to the amygdala. The left entorhinal cortex was the only seed to have significant functional connectivity with frontal cortex (anterior cingulate and superior frontal gyrus). Only higher left dentate-left lingual connectivity was associated with poorer CVLT performance (Spearman r = -0.81, p = 0.0003, Benjamini-Hochberg false discovery rate: 0.01) after multiple comparison correction. CONCLUSIONS: Rather than global hyper-connectivity of the medial temporal lobe, left dentate-lingual connectivity may provide a specific assay of medial temporal lobe hyper-connectivity relevant to memory in aging.


Subject(s)
Brain Mapping , Hippocampus/physiopathology , Memory/physiology , Aged , Female , Humans , Magnetic Resonance Imaging , Male , Mental Recall/physiology , Neural Pathways/physiopathology
5.
NMR Biomed ; 30(1)2017 01.
Article in English | MEDLINE | ID: mdl-27859861

ABSTRACT

In ultrahigh-field MRI, such as 7 T, the signal-to-noise ratio (SNR) increases while transmit (Tx) field (B1+ ) can be degraded due to inhomogeneity and elevated specific absorption rate (SAR). By applying new array coil concepts to both Tx and receive (Rx) coils, the B1+ homogeneity and SNR can be improved. In this study, we developed and tested in vivo a new RF coil system for 7 T breast MRI. An RF coil system composed of an eight-channel Tx-only array based on a tic-tac-toe design (can be combined to operate in single-Tx mode) in conjunction with an eight-channel Rx-only insert was developed. Characterizations of the B1+ field and associated SAR generated by the developed RF coil system were numerically calculated and empirically measured using an anatomically detailed breast model, phantom and human breasts. In vivo comparisons between 3 T (using standard commercial solutions) and 7 T (using the newly developed coil system) breast imaging were made. At 7 T, about 20% B1+ inhomogeneity (standard deviation over the mean) was measured within the breast tissue for both the RF simulations and 7 T experiments. The addition of the Rx-only array enhances the SNR by a factor of about three. High-quality MR images of human breast were acquired in vivo at 7 T. For the in vivo comparisons between 3 T and 7 T, an approximately fourfold increase of SNR was measured with 7 T imaging. The B1+ field distributions in the breast model, phantom and in vivo were in reasonable agreement. High-quality 7 T in vivo breast MRI was successfully acquired at 0.6 mm isotropic resolution using the newly developed RF coil system.


Subject(s)
Breast/anatomy & histology , Breast/diagnostic imaging , Image Enhancement/instrumentation , Magnetic Resonance Imaging/instrumentation , Magnetics/instrumentation , Transducers , Adult , Equipment Design , Equipment Failure Analysis , Female , Humans , Image Enhancement/methods , Image Interpretation, Computer-Assisted/instrumentation , Image Interpretation, Computer-Assisted/methods , Magnetic Fields , Phantoms, Imaging , Radiation Dosage , Reproducibility of Results , Sensitivity and Specificity
6.
Am J Geriatr Psychiatry ; 25(3): 209-217, 2017 Mar.
Article in English | MEDLINE | ID: mdl-27986412

ABSTRACT

BACKGROUND: Greater hippocampal volume is observed in healthy older adults after short-term structured exercise. Whether long-term exposure to real-world physical activity (PA) programs has similar effects for sedentary older adults with impaired mobility and comorbid conditions is not known. HYPOTHESIS: A long-term moderate intensity regimen of PA is related to larger volume of the hippocampus in older adults at risk for mobility disability. We further explore whether these associations are modified by factors known to be related to dementia. METHODS: Twenty-six sedentary adults at risk for mobility disability participated in a 24-month randomized intervention program of physical activity (PA, N = 10, age: 74.9 years, 7 women) or health education (HE, N = 16, age: 76.8 years, 14 women). Volumes of total hippocampus, dentate gyrus, and cornu ammonis were measured at baseline and at 24-month follow-up using 7-Tesla magnetic resonance imaging. Between-group volumetric differences at 24 months were adjusted for sessions attended and baseline volumes. The contribution of each dementia-related factor was tested separately for education, APOE, diabetes, cardiovascular diseases, white matter hyperintensities, and brain atrophy. RESULTS: Between-group differences were significant for left hippocampus, left cornu ammonis, and right hippocampus. Adjustment for regional baseline volume attenuated the associations to statistically nonsignificant for right hippocampus and left conru ammonis; associations for left hippocampus were robust for all adjustments. Results were similar after adjustment for dementia-related factors. CONCLUSIONS: In this group of sedentary older adults there was a hippocampal response to a long-term program of moderate-intensity PA. Future studies should examine whether hippocampal response could explain the beneficial effects of PA on cognition for vulnerable older adults.


Subject(s)
Exercise Therapy/methods , Exercise/physiology , Hippocampus/diagnostic imaging , Sedentary Behavior , Aged , Aged, 80 and over , Female , Health Education/methods , Humans , Magnetic Resonance Imaging , Male , Time Factors
7.
NMR Biomed ; 29(12): 1768-1779, 2016 12.
Article in English | MEDLINE | ID: mdl-27809383

ABSTRACT

The purpose of this study is to develop and evaluate a custom-designed 7  T MRI coil and explore its use for upper extremity applications. An RF system composed of a transverse electromagnetic transmit coil and an eight-channel receive-only array was developed for 7  T upper extremity applications. The RF system was characterized and evaluated using scattering parameters and B1+ mapping. Finite difference time domain simulations were performed to evaluate the B1+ field distribution and specific absorption rate for the forearm region of the upper extremity. High-resolution 7  T images were acquired and compared with those at 3 T. The simulation and experimental results show very good B1+ field homogeneity across the forearm. High-resolution images of musculotendinous, osseocartilaginous, and neurovascular structures in the upper extremity are presented with T1 volumetric interpolated breath-hold examination, T2 double-echo steady state, T2 * susceptibility weighted imaging (SWI), diffusion tensor imaging, and time-of-flight sequences. Comparison between 3  T and 7  T is shown. Intricate contextual anatomy can be delineated in synovial, fibrocartilaginous, interosseous, and intraosseous trabecular structures of the forearm, as well as palmar and digital vascular anatomy (including microvascular detail in SWI). Ultra-high-field 7  T imaging holds great potential in improving the sensitivity and specificity of upper extremity imaging, especially in wrist and hand pathology secondary to bone, ligament, nerve, vascular, and other soft or hard tissue etiology.


Subject(s)
Image Enhancement/instrumentation , Magnetic Resonance Imaging/instrumentation , Magnetics/instrumentation , Transducers , Upper Extremity/anatomy & histology , Computer-Aided Design , Equipment Design , Equipment Failure Analysis , Humans , Reproducibility of Results , Sensitivity and Specificity
8.
Magn Reson Med ; 74(5): 1461-9, 2015 Nov.
Article in English | MEDLINE | ID: mdl-25367703

ABSTRACT

PURPOSE: To optimize the design of radiofrequency (RF) shielding of transmit coils at 7T and reduce eddy currents generated on the RF shielding when imaging with rapid gradient waveforms. METHODS: One set of a four-element, 2 × 2 Tic-Tac-Toe head coil structure was selected and constructed to study eddy currents on the RF coil shielding. The generated eddy currents were quantitatively studied in the time and frequency domains. The RF characteristics were studied using the finite difference time domain method. Five different kinds of RF shielding were tested on a 7T MRI scanner with phantoms and in vivo human subjects. RESULTS: The eddy current simulation method was verified by the measurement results. Eddy currents induced by solid/intact and simple-structured slotted RF shielding significantly distorted the gradient fields. Echo-planar images, B1+ maps, and S matrix measurements verified that the proposed slot pattern suppressed the eddy currents while maintaining the RF characteristics of the transmit coil. CONCLUSION: The presented dual-optimization method could be used to design RF shielding and reduce the gradient field-induced eddy currents while maintaining the RF characteristics of the transmit coil.


Subject(s)
Magnetic Resonance Imaging/instrumentation , Magnetic Resonance Imaging/methods , Brain/anatomy & histology , Computer Simulation , Copper , Electromagnetic Fields , Equipment Design , Humans , Phantoms, Imaging , Radio Waves
9.
J Magn Reson Imaging ; 39(2): 475-84, 2014 Feb.
Article in English | MEDLINE | ID: mdl-23913474

ABSTRACT

PURPOSE: To evaluate the effect of different cylindrical and close-conforming receive-only array designs on spin excitation and specific absorption rate (SAR) of a 7 T transmit-only head coil. MATERIALS AND METHODS: We developed finite difference time domain (FDTD) models of different receive-only array geometries. Cylindrical and close-fitting helmet arrays with varying copper trace widths, a TEM Tx coil model, and two head models were used in numerical simulations. Tx coil coupling was experimentally measured and validated with FDTD modeling. RESULTS: Changing copper trace width of loops in array models caused subtle changes in radiofrequency (RF) absorption (<5%). Changes in SAR distribution were observed in the head models with Rx-only inserts. Peak SAR increased (-1 to +15%) in different tissues for a mean B1 (+) in the brain of 2 µT. Total absorption in the head models for 1 W forward power increased (5%-21%) in the heads with Rx-only inserts. Changes in RF absorption with different Rx inserts indicate a change in RF radiation of the Tx coil even when changes in B1 (+) and coupling between ports of Tx coil were minimal. CONCLUSION: Changes in local/global SAR and subtle changes in B1 (+) field distributions were observed in the presence of Rx-only inserts. Thus, incorporation of the receive-only array effects are needed when evaluating SAR and designing RF transmit pulse waveform parameters for shimming and/or Tx-SENSE for 7 T MRI.


Subject(s)
Brain/anatomy & histology , Image Enhancement/instrumentation , Magnetic Resonance Imaging/instrumentation , Magnetics/instrumentation , Models, Biological , Computer Simulation , Computer-Aided Design , Equipment Design , Equipment Failure Analysis , Humans , Image Enhancement/methods , Magnetic Resonance Imaging/methods , Phantoms, Imaging , Reproducibility of Results , Sensitivity and Specificity
10.
Brain Struct Funct ; 229(2): 273-283, 2024 Mar.
Article in English | MEDLINE | ID: mdl-37812278

ABSTRACT

The paraventricular nucleus of the hypothalamus (PVN) is uniquely capable of proximal control over autonomic and neuroendocrine stress responses, and the bed nucleus of the stria terminalis (BNST) directly modulates PVN function, as well as playing an important role in stress control itself. The dorsal BNST (dBNST) is predominantly preautonomic, while the ventral BNST (vBNST) is predominantly viscerosensory, receiving dense noradrenergic signaling. Distinguishing the dBNST and vBNST, along with the PVN, may facilitate our understanding of dynamic interactions among these regions. T1-weighted MPRAGE and high resolution gradient echo (GRE) modalities were acquired at 7T. GRE was coregistered to MPRAGE and segmentations were performed in MRIcroGL based on their Atlas of the Human Brain depictions. The dBNST, vBNST and PVN were manually segmented in 25 participants; 10 images were rated by 2 raters. These segmentations were normalized and probabilistic atlases for each region were generated in MNI space, now available as resources for future research. We found moderate-high inter-rater reliability [n = 10; Mean Dice (SD); PVN = 0.69 (0.04); dBNST = 0.77 (0.04); vBNST = 0.62 (0.04)]. Probabilistic atlases were reverse normalized into native space for six additional participants that were segmented but not included in the original 25. We also found moderate to moderate-high reliability between the probabilistic atlases and manual segmentations [n = 6; Mean Dice (SD); PVN = 0.55 (0.12); dBNST = 0.60 (0.10); vBNST = 0.47 (0.12 SD)]. By isolating these hypothalamic and BNST subregions using ultra-high field MRI modalities, more specific delineations of these regions can facilitate greater understanding of mechanisms underlying stress-related function and psychopathology.


Subject(s)
Paraventricular Hypothalamic Nucleus , Septal Nuclei , Humans , Septal Nuclei/diagnostic imaging , Septal Nuclei/physiology , Reproducibility of Results , Signal Transduction , Magnetic Resonance Imaging
11.
Front Neurosci ; 18: 1305939, 2024.
Article in English | MEDLINE | ID: mdl-38784099

ABSTRACT

The development of innovative non-invasive neuroimaging methods and biomarkers is critical for studying brain disease. Imaging of cerebrospinal fluid (CSF) pulsatility may inform the brain fluid dynamics involved in clearance of cerebral metabolic waste. In this work, we developed a methodology to characterize the frequency and spatial localization of whole brain CSF pulsations in humans. Using 7 Tesla (T) human magnetic resonance imaging (MRI) and ultrafast echo-planar imaging (EPI), in-vivo images were obtained to capture pulsations of the CSF signal. Physiological data were simultaneously collected and compared with the 7 T MR data. The primary components of signal pulsations were identified using spectral analysis, with the most evident frequency bands identified around 0.3, 1.2, and 2.4 Hz. These pulsations were mapped spatially and temporally onto the MR image domain and temporally onto the physiological measures of electrocardiogram and respiration. We identified peaks in CSF pulsations that were distinct from peaks in grey matter and white matter regions. This methodology may provide novel in vivo biomarkers of disrupted brain fluid dynamics.

12.
Mult Scler Relat Disord ; 86: 105520, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38582026

ABSTRACT

BACKGROUND: Previous studies have shown that thalamic and hippocampal neurodegeneration is associated with clinical decline in Multiple Sclerosis (MS). However, contributions of the specific thalamic nuclei and hippocampal subfields require further examination. OBJECTIVE: Using 7 Tesla (7T) magnetic resonance imaging (MRI), we investigated the cross-sectional associations between functionally grouped thalamic nuclei and hippocampal subfields volumes and T1 relaxation times (T1-RT) and subsequent clinical outcomes in MS. METHODS: High-resolution T1-weighted and T2-weighted images were acquired at 7T (n=31), preprocessed, and segmented using the Thalamus Optimized Multi Atlas Segmentation (THOMAS, for thalamic nuclei) and the Automatic Segmentation of Hippocampal Subfields (ASHS, for hippocampal subfields) packages. We calculated Pearson correlations between hippocampal subfields and thalamic nuclei volumes and T1-RT and subsequent multi-modal rater-determined and patient-reported clinical outcomes (∼2.5 years after imaging acquisition), correcting for confounders and multiple tests. RESULTS: Smaller volume bilaterally in the anterior thalamus region correlated with worse performance in gait function, as measured by the Patient Determined Disease Steps (PDDS). Additionally, larger volume in most functional groups of thalamic nuclei correlated with better visual information processing and cognitive function, as measured by the Symbol Digit Modalities Test (SDMT). In bilateral medial and left posterior thalamic regions, there was an inverse association between volumes and T1-RT, potentially indicating higher tissue degeneration in these regions. We also observed marginal associations between the right hippocampal subfields (both volumes and T1-RT) and subsequent clinical outcomes, though they did not survive correction for multiple testing. CONCLUSION: Ultrahigh field MRI identified markers of structural damage in the thalamic nuclei associated with subsequently worse clinical outcomes in individuals with MS. Longitudinal studies will enable better understanding of the role of microstructural integrity in these brain regions in influencing MS outcomes.


Subject(s)
Hippocampus , Magnetic Resonance Imaging , Multiple Sclerosis , Thalamic Nuclei , Humans , Hippocampus/diagnostic imaging , Hippocampus/pathology , Male , Female , Adult , Thalamic Nuclei/diagnostic imaging , Thalamic Nuclei/pathology , Multiple Sclerosis/diagnostic imaging , Multiple Sclerosis/pathology , Middle Aged , Cross-Sectional Studies
13.
J Neurosci Methods ; 407: 110133, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38588922

ABSTRACT

BACKGROUND: High-precision neurosurgical targeting in nonhuman primates (NHPs) often requires presurgical anatomical mapping with noninvasive neuroimaging techniques (MRI, CT, PET), allowing for translation of individual anatomical coordinates to surgical stereotaxic apparatus. Given the varied tissue contrasts that these imaging techniques produce, precise alignment of imaging-based coordinates to surgical apparatus can be cumbersome. MRI-compatible stereotaxis with radiopaque fiducial markers offer a straight-forward and reliable solution, but existing commercial options do not fit in conformal head coils that maximize imaging quality. NEW METHOD: We developed a compact MRI-compatible stereotaxis suitable for a variety of NHP species (Macaca mulatta, Macaca fascicularis, and Cebus apella) that allows multimodal alignment through technique-specific fiducial markers. COMPARISON WITH EXISTING METHODS: With the express purpose of compatibility with clinically available MRI, CT, and PET systems, the frame is no larger than a human head, while allowing for imaging NHPs in the supinated position. This design requires no marker implantation, special software, or additional knowledge other than the operation of a common large animal stereotaxis. RESULTS: We demonstrated the applicability of this 3D-printable apparatus across a diverse set of experiments requiring presurgical planning: 1) We demonstrate the accuracy of the fiducial system through a within-MRI cannula insertion and subcortical injection of a viral vector. 2) We also demonstrated accuracy of multimodal (MRI and CT) alignment and coordinate transfer to guide a surgical robot electrode implantation for deep-brain electrophysiology. CONCLUSIONS: The computer-aided design files and engineering drawings are publicly available, with the modular design allowing for low cost and manageable manufacturing.


Subject(s)
Brain Mapping , Cebus , Magnetic Resonance Imaging , Animals , Magnetic Resonance Imaging/methods , Magnetic Resonance Imaging/instrumentation , Brain Mapping/methods , Brain Mapping/instrumentation , Stereotaxic Techniques/instrumentation , Brain/diagnostic imaging , Brain/surgery , Brain/anatomy & histology , Fiducial Markers , Multimodal Imaging/methods , Multimodal Imaging/instrumentation , Macaca mulatta , Male
14.
medRxiv ; 2023 Dec 06.
Article in English | MEDLINE | ID: mdl-38105931

ABSTRACT

Development of innovative non-invasive neuroimaging methods and biomarkers are critical for studying brain disease. In this work, we have developed a methodology to characterize the frequency responses and spatial localization of oscillations and movements of cerebrospinal fluid (CSF) flow in the human brain. Using 7 Tesla human MRI and ultrafast echo-planar imaging (EPI), in-vivo images were obtained to capture CSF oscillations and movements. Physiological data was simultaneously collected and correlated with the 7T MR data. The primary components of CSF oscillations were identified using spectral analysis (with frequency bands identified around 0.3Hz, 1.2Hz and 2.4Hz) and were mapped spatially and temporally onto the MR image domain and temporally onto the physiological domain. The developed methodology shows a good consistency and repeatability (standard deviation of 0.052 and 0.078 for 0.3Hz and 1.2Hz bands respectively) in-vivo for potential brain dynamics and CSF flow and clearance studies.

15.
J Eng Sci Med Diagn Ther ; 5(2): 021002, 2022 May 01.
Article in English | MEDLINE | ID: mdl-35833206

ABSTRACT

As machine learning is used to make strides in medical diagnostics, few methods provide heuristics from which human doctors can learn directly. This work introduces a method for leveraging human observable structures, such as macroscale vascular formations, for producing assessments of medical conditions with relatively few training cases, and uncovering patterns that are potential diagnostic aids. The approach draws on shape grammars, a rule-based technique, pioneered in design and architecture, and accelerated through a recursive subgraph mining algorithm. The distribution of rule instances in the data from which they are induced is then used as an intermediary representation enabling common classification and anomaly detection approaches to identify indicative rules with relatively small data sets. The method is applied to seven-tesla time-of-flight angiography MRI (n = 54) of human brain vasculature. The data were segmented and induced to generate representative grammar rules. Ensembles of rules were isolated to implicate vascular conditions reliably. This application demonstrates the power of automated structured intermediary representations for assessing nuanced biological form relationships, and the strength of shape grammars, in particular for identifying indicative patterns in complex vascular networks.

16.
Magn Reson Med ; 66(3): 687-96, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21520270

ABSTRACT

Parallel transmission has emerged as an efficient means for implementing multidimensional spatially selective radiofrequency excitation pulses. To date, most theoretical and experimental work on parallel transmission radiofrequency (RF) pulse design is based on the small-tip-angle approximation to the Bloch equation. The small-tip-angle, while mathematically compact, is not an exact solution and leads to significant errors when large-tip-angle pulses are designed. Methods have been proposed to overcome the limitations of the small-tip-angle using regularized least-square optimization or optimal control algorithms. These methods, however, are based on further approximations to the Bloch equation or require the use of general purpose algorithms that do not capitalize fully on the dynamics of the physical model at hand. In this article, a novel algorithm for large-tip-angle parallel transmission pulse design is proposed. The algorithm relies on a perturbation analysis of the Bloch equation and it depicts the relationship between the excited magnetization, its deviation from the target pattern and the desired pulses. Simulations and experiments are used to validate the proposed method on a 7 T 8-channel transmit array. The results demonstrate that the perturbation analysis algorithm provides a fast and accurate approach for multidimensional large-tip-angle pulse design, especially when large acceleration factors and/or echo-planar trajectories are used.


Subject(s)
Image Processing, Computer-Assisted/methods , Magnetic Resonance Imaging/methods , Algorithms , Computer Simulation , Echo-Planar Imaging , Image Enhancement/methods , Least-Squares Analysis , Magnetic Resonance Imaging/instrumentation , Phantoms, Imaging , Radio Waves , Signal Processing, Computer-Assisted , Transducers
17.
NMR Biomed ; 24(7): 778-83, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21834001

ABSTRACT

The aims of the present study were as follows: (i) to perform the first (87)Rb MRI in live rats with focal ischemic stroke; and (ii) to test the hypothesis that K(+) egress from the brain in this model is quantifiable in individual animals by high-field (7-T) K/Rb substitution MRI. Rats preloaded with dietary Rb(+) (resulting in Rb/(K + Rb) replacement ratios of 0.1-0.2 in the brain) were subjected to permanent occlusion of the middle cerebral artery, and (87)Rb MRI was implemented with 13-min temporal resolution using a dedicated RF coil and a spiral ultrashort-TE sequence (TR/TE = 3/0.07 ms). The ischemic core was localized by apparent diffusion coefficient mapping, by microtubule-associated protein-2 immunohistochemistry and by changes in surface reflectivity. [K], [Na] and [Rb] were determined independently in the micropunched samples by post-mortem flame photometry. Both techniques were generally in agreement in the nonischemic cortex; however, the MRI-assessed [K(+) + Rb(+)] drop in ischemic brain was less pronounced (average efflux rate of 4.8 ± 0.2 nEq/mm(3) /h versus 10 ± 1 nEq/mm(3)/h by flame photometry; p < 0.0001). The use of higher field gradients for better spatial resolution, and hence more accurate quantification, is suggested.


Subject(s)
Brain Ischemia/metabolism , Brain Ischemia/pathology , Magnetic Resonance Imaging/methods , Potassium/metabolism , Rubidium Radioisotopes/metabolism , Animals , Brain/anatomy & histology , Brain/metabolism , Brain/pathology , Infarction, Middle Cerebral Artery/pathology , Magnetic Resonance Imaging/instrumentation , Male , Microtubule-Associated Proteins/metabolism , Rats , Rats, Sprague-Dawley
18.
Article in English | MEDLINE | ID: mdl-21607117

ABSTRACT

In ultrahigh field (UHF), human magnetic resonance imaging (MRI) concerns related to the homogeneity of the B1+ field [the radiofrequency (RF) magnetic field component responsible for the excitation of the spins] and the local/average specific absorption rate (SAR) are highly evident. In this work, through RF shimming techniques, a full-wave electromagnetic model that treats a coupled-RF coil and the load (an 18-tissue anatomically detailed human head model) as a single system is utilized to simultaneously (1) improve the homogeneity of B1+ field in various regions of interest across the volume of the human head and (2) minimize the total RF power deposition at 7 and 9.4 T. The numerical results illustrate that the B1+ field homogeneity (evaluated by the coefficient of variance) can be greatly improved in 3D slabs that vary in orientations and sizes, in the brain, and in the entire head volume without increasing the total RF power deposition in the head to exceed that obtained with quadrature excitation. The RF shimming simulation results are experimentally validated (by performing RF shimming without experimental B(1) measurements) on a head-sized phantom using a 7-T human MRI scanner equipped with a transmit array excitation system. The SAR and associated temperature changes under quadrature and RF shimming excitation conditions are calculated and compared.

19.
Sci Rep ; 11(1): 3370, 2021 02 09.
Article in English | MEDLINE | ID: mdl-33564013

ABSTRACT

Recently cleared by the FDA, 7 Tesla (7 T) MRI is a rapidly growing technology that can provide higher resolution and enhanced contrast in human MRI images. However, the increased operational frequency (~ 297 MHz) hinders its full potential since it causes inhomogeneities in the images and increases the power deposition in the tissues. This work describes the optimization of an innovative radiofrequency (RF) head coil coupled design, named Tic Tac Toe, currently used in large scale human MRI scanning at 7 T; to date, this device was used in more than 1,300 neuro 7 T MRI scans. Electromagnetic simulations of the coil were performed using the finite-difference time-domain method. Numerical optimizations were used to combine the calculated electromagnetic fields produced by these antennas, based on the superposition principle, resulting in homogeneous magnetic field distributions at low levels of power deposition in the tissues. The simulations were validated in-vivo using the Tic Tac Toe RF head coil system on a 7 T MRI scanner.


Subject(s)
Electromagnetic Fields , Equipment Design , Models, Theoretical
20.
Neuroimage Clin ; 30: 102655, 2021.
Article in English | MEDLINE | ID: mdl-34215139

ABSTRACT

Sickle cell disease (SCD) is an inherited hemoglobinopathy that causes organ dysfunction, including cerebral vasculopathy and neurological complications. Hippocampal segmentation with newer and advanced 7 Tesla (7T) MRI protocols has revealed atrophy in specific subregions in other neurodegenerative and neuroinflammatory diseases, however, there is limited evidence of hippocampal involvement in SCD. Thus, we explored whether SCD may be also associated with abnormalities in hippocampal subregions. We conducted 7T MRI imaging in individuals with SCD, including the HbSS, HbSC and HbS/beta thalassemia genotypes (n = 53), and healthy race and age-matched controls (n = 47), using a customized head coil. Both T1- and T2-weighted images were used for automatic segmentation of the hippocampal subfields. Individuals with SCD had, on average, significantly smaller volume of the region including the Dentate Gyrus and Cornu Ammonis (CA) 2 and 3 as compared to the control group. Other hippocampal subregions also showed a trend towards smaller volumes in the SCD group. These findings support and extend previous reports of reduced volume in the temporal lobe in SCD patients. Further studies are necessary to investigate the mechanisms that lead to structural changes in the hippocampus subfields and their relationship with cognitive performance in SCD patients.


Subject(s)
Anemia, Sickle Cell , Hippocampus , Anemia, Sickle Cell/diagnostic imaging , CA2 Region, Hippocampal , Hippocampus/diagnostic imaging , Humans , Magnetic Resonance Imaging , Temporal Lobe
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