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1.
Mol Cell ; 82(4): 803-815.e5, 2022 02 17.
Article in English | MEDLINE | ID: mdl-35077705

ABSTRACT

The hormone-stimulated glucocorticoid receptor (GR) modulates transcription by interacting with thousands of enhancers and GR binding sites (GBSs) throughout the genome. Here, we examined the effects of GR binding on enhancer dynamics and investigated the contributions of individual GBSs to the hormone response. Hormone treatment resulted in genome-wide reorganization of the enhancer landscape in breast cancer cells. Upstream of the DDIT4 oncogene, GR bound to four sites constituting a hormone-dependent super enhancer. Three GBSs were required as hormone-dependent enhancers that differentially promoted histone acetylation, transcription frequency, and burst size. Conversely, the fourth site suppressed transcription and hormone treatment alleviated this suppression. GR binding within the super enhancer promoted a loop-switching mechanism that allowed interaction of the DDIT4 TSS with the active GBSs. The unique functions of each GR binding site contribute to hormone-induced transcriptional heterogeneity and demonstrate the potential for targeted modulation of oncogene expression.


Subject(s)
Antineoplastic Agents/pharmacology , Breast Neoplasms/drug therapy , Dexamethasone/pharmacology , Enhancer Elements, Genetic , Gene Expression Regulation, Neoplastic/drug effects , Receptors, Glucocorticoid/agonists , Transcription Factors/metabolism , Transcription, Genetic/drug effects , Binding Sites , Breast Neoplasms/genetics , Breast Neoplasms/metabolism , Breast Neoplasms/pathology , Cell Line, Tumor , Female , Humans , Receptors, Glucocorticoid/genetics , Receptors, Glucocorticoid/metabolism , Signal Transduction , Transcription Factors/genetics
2.
Regul Toxicol Pharmacol ; : 105712, 2024 Sep 26.
Article in English | MEDLINE | ID: mdl-39341586

ABSTRACT

We recently conducted a detailed hazard assessment of tetramethylammonium hydroxide (TMAH), a priority chemical substance under the Japan Chemical Substances Control Law. During this assessment, there was debate regarding the reduced heart weight observed in the treated male groups in the 28-day rat oral repeated-dose toxicity study. This finding was not observed in females in this study and in both sexes of oral toxicity studies for tetramethylammonium chloride (TMAC) or tetramethylammonium hydrogen phthalate (TMAHP). Unpublished individual data from the oral TMAH developmental and reproductive toxicity (DART) screening study were also obtained; no effect on heart weight was observed. In addition, background data on rat heart weight from six 28-day oral toxicity studies conducted in the same facility, year, strain, age, and breeder as the TMAH study were obtained from the Japan Existing Chemical Substances Database (JECDB). These investigations suggest that the statistically significant lower heart weight in the treated males in the 28-day toxicity study is likely caused by an incidental skewing of individuals with heavier heart weights toward control male groups and is not due to TMAH treatment. Thus, it is worthwhile to include as much relevant data as possible to confirm or refute unexpected findings in toxicity studies.

3.
Article in English | MEDLINE | ID: mdl-36740968

ABSTRACT

The objectives of this study were to develop a novel analytical method for quantifying vinyl chloride (VC) emitted from aerosol products, to provide analytical data on VC in aerosol products, and to evaluate consumer VC exposure by aerosol products. Our quantitative method involves absorbing VC into dimethyl sulfoxide and analyzing it using headspace gas chromatography/mass spectrometry. The correlation coefficients of the VC calibration curves were ≥ 0.9994 in the range of 0.16-80 µg/mL VC standard gases, which were prepared under either nitrogen or emission gases containing dimethyl ether or liquid petroleum gas. VC concentrations in these emission gases were calculated using a VC calibration curve from standard gases prepared under nitrogen; they were within ± 10% of the actual concentrations. We analyzed 39 household aerosol products; VC concentrations of 0.095, 0.098, and 0.28 µg/L were detected in three polyvinyl chloride spray paints. Consumer VC inhalation exposure level was estimated through an exposure scenario, and the hazard quotient was confirmed to be very low when comparing the exposure level with a cancer risk level of 10-5 for inhaled VC. These results suggest that the human health risk from VC in spray paint was low.


Subject(s)
Vinyl Chloride , Humans , Vinyl Chloride/analysis , Polyvinyl Chloride , Aerosols , Gases/chemistry , Nitrogen/analysis , Risk Assessment
4.
Nucleic Acids Res ; 48(18): 10500-10517, 2020 10 09.
Article in English | MEDLINE | ID: mdl-32986830

ABSTRACT

The Xist lncRNA requires Repeat A, a conserved RNA element located in its 5' end, to induce gene silencing during X-chromosome inactivation. Intriguingly, Repeat A is also required for production of Xist. While silencing by Repeat A requires the protein SPEN, how Repeat A promotes Xist production remains unclear. We report that in mouse embryonic stem cells, expression of a transgene comprising the first two kilobases of Xist (Xist-2kb) causes transcriptional readthrough of downstream polyadenylation sequences. Readthrough required Repeat A and the ∼750 nucleotides downstream, did not require SPEN, and was attenuated by splicing. Despite associating with SPEN and chromatin, Xist-2kb did not robustly silence transcription, whereas a 5.5-kb Xist transgene robustly silenced transcription and read through its polyadenylation sequence. Longer, spliced Xist transgenes also induced robust silencing yet terminated efficiently. Thus, in contexts examined here, Xist requires sequence elements beyond its first two kilobases to robustly silence transcription, and the 5' end of Xist harbors SPEN-independent transcriptional antiterminator activity that can repress proximal cleavage and polyadenylation. In endogenous contexts, this antiterminator activity may help produce full-length Xist RNA while rendering the Xist locus resistant to silencing by the same repressive complexes that the lncRNA recruits to other genes.


Subject(s)
DNA-Binding Proteins/genetics , RNA, Long Noncoding/genetics , RNA-Binding Proteins/genetics , Transcription, Genetic , X Chromosome Inactivation/genetics , Animals , Chromatin/genetics , Gene Expression Regulation, Developmental/genetics , Gene Silencing , Mice , Mouse Embryonic Stem Cells/metabolism , Polyadenylation/genetics , Repetitive Sequences, Nucleic Acid/genetics , X Chromosome/genetics
5.
Nucleic Acids Res ; 47(13): 7049-7062, 2019 07 26.
Article in English | MEDLINE | ID: mdl-31114903

ABSTRACT

Xist requires Repeat-A, a protein-binding module in its first two kilobases (2kb), to repress transcription. We report that when expressed as a standalone transcript in mouse embryonic stem cells (ESCs), the first 2kb of Xist (Xist-2kb) does not induce transcriptional silencing. Instead, Xist-2kb sequesters RNA produced from adjacent genes on chromatin. Sequestration does not spread beyond adjacent genes, requires the same sequence elements in Repeat-A that full-length Xist requires to repress transcription and can be induced by lncRNAs with similar sequence composition to Xist-2kb. We did not detect sequestration by full-length Xist, but we did detect it by mutant forms of Xist with attenuated transcriptional silencing capability. Xist-2kb associated with SPEN, a Repeat-A binding protein required for Xist-induced transcriptional silencing, but SPEN was not necessary for sequestration. Thus, when expressed in mouse ESCs, a 5' fragment of Xist that contains Repeat-A sequesters RNA from adjacent genes on chromatin and associates with the silencing factor SPEN, but it does not induce transcriptional silencing. Instead, Xist-induced transcriptional silencing requires synergy between Repeat-A and additional sequence elements in Xist. We propose that sequestration is mechanistically related to the Repeat-A dependent stabilization and tethering of Xist near actively transcribed regions of chromatin.


Subject(s)
Chromatin/genetics , Gene Silencing/physiology , RNA, Long Noncoding/genetics , RNA, Messenger/metabolism , Repetitive Sequences, Nucleic Acid/genetics , Animals , Base Pairing , Cells, Cultured , DNA-Binding Proteins/metabolism , Embryonic Stem Cells , Female , Gene Expression Regulation/genetics , Genes , Male , Mice , Mice, Transgenic , RNA Stability , RNA, Long Noncoding/chemical synthesis , RNA-Binding Proteins/metabolism , Transcription, Genetic
6.
Regul Toxicol Pharmacol ; 122: 104914, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33684452

ABSTRACT

Ethyl(dimethyl)(tetradecyl)ammonium ethyl sulfate, used in laundry detergents, shampoos, and body soaps, is classified by the Japanese Chemical Substances Control Law as a priority assessment chemical substance for environmental effects. However, its toxicity data for human health are insufficient. This study evaluated this chemical under the Safety Examination of Existing Chemicals and Safety Programmes of the Ministry of Health, Labour and Welfare (MHLW). The MHLW conducted bacterial reverse mutation (Ames test), in vitro chromosomal aberration, and combined repeated-dose and reproductive/developmental toxicity screening tests. We performed a screening assessment of ethyl(dimethyl)(tetradecyl)ammonium ethyl sulfate for human health. The chemical showed a negative reaction in the Ames test and a positive reaction in the in vitro chromosomal aberration test with metabolic activation in rats. The combined repeated-dose and reproductive/developmental toxicity screening test showed significantly decreased food consumption at 50 mg/kg body weight/day, but no reproductive and developmental toxicity was observed. The no-observed-effect level of 15 mg/kg/day was obtained as a screening value. Therefore, this chemical was classified as hazard class 3, with a derived-no-effect level of 0.025 mg/kg/day. The results of this study will be useful for risk assessment of groups of structurally similar alkyl quaternary ammonium surfactants.


Subject(s)
Genitalia/drug effects , Quaternary Ammonium Compounds/toxicity , Animals , Cell Line , Cricetinae , Dose-Response Relationship, Drug , Eating , Female , Male , Mutagenicity Tests , No-Observed-Adverse-Effect Level , Organ Size/drug effects , Rats , Rats, Sprague-Dawley
7.
Shokuhin Eiseigaku Zasshi ; 62(2): 56-64, 2021.
Article in Japanese | MEDLINE | ID: mdl-33883337

ABSTRACT

Benchmark dose (BMD) method have been used in the toxicological assessment of chemical substances so that the point of departure can be derived, as an alternative to the use of no observable adverse effect level (NOAEL), and the method is often applied to the incidence data of histopathological findings in the toxicity studies. In the present study, the BMD method was applied to various patterns of incidence data derived from some toxicity studies as case studies, and the validity of each application was discussed. Five independent applications including toxicity studies of madder color or semicarbazide hydrochloride were prepared and model averaging over the three models with the lowest three AIC (Akaike information criteria) values (MA-3), a recently proposed model averaging method, was employed. The series of case studies indicated, for the better application of the BMD method to histopathological findings, the following points:(i) If there are incidence data with severity grading of pathologically significant lesions, we must discuss whether the BMD method should be applied to the total incidence data or the incidence data above certain grade with or without data aggregation.(ii) If a lesion of interest had higher toxicological significance rather than the secondary lesions with higher severity, the BMD method should be applied to the incidence data of the lesion of interest.(iii) If it is highly necessary to apply the BMD method to obtained incidence data without toxicological and statistical validity, toxicological pathologists are advised to review individual datasets of histopathology and associated data, and provide new incidence data of comprehensive findings (diagnostic name) such as hepatocellular injury or nephropathy, if possible. In all cases, toxicological significance and mechanism of a lesion of interest need to be considered in light of the dose-dependence. In view of both toxicology and statistics, sufficient discussions must be made on the validity of applying BMD method and its estimate.


Subject(s)
Benchmarking , Dose-Response Relationship, Drug , Incidence , No-Observed-Adverse-Effect Level , Risk Assessment
8.
Theor Biol Med Model ; 17(1): 13, 2020 08 05.
Article in English | MEDLINE | ID: mdl-32753042

ABSTRACT

BACKGROUND: To employ the benchmark dose (BMD) method in toxicological risk assessment, it is critical to understand how the BMD lower bound for reference dose calculation is selected following statistical fitting procedures of multiple mathematical models. The purpose of this study was to compare the performances of various combinations of model exclusion and selection criteria for quantal response data. METHODS: Simulation-based evaluation of model exclusion and selection processes was conducted by comparing validity, reliability, and other model performance parameters. Three different empirical datasets for different chemical substances were analyzed for the assessment, each having different characteristics of the dose-response pattern (i.e. datasets with rich information in high or low response rates, or approximately linear dose-response patterns). RESULTS: The best performing criteria of model exclusion and selection were different across the different datasets. Model averaging over the three models with the lowest three AIC (Akaike information criteria) values (MA-3) did not produce the worst performance, and MA-3 without model exclusion produced the best results among the model averaging. Model exclusion including the use of the Kolmogorov-Smirnov test in advance of model selection did not necessarily improve the validity and reliability of the models. CONCLUSIONS: If a uniform methodological suggestion for the guideline is required to choose the best performing model for exclusion and selection, our results indicate that using MA-3 is the recommended option whenever applicable.


Subject(s)
Benchmarking , Computer Simulation , Dose-Response Relationship, Drug , Risk Assessment , Reproducibility of Results
9.
Regul Toxicol Pharmacol ; 112: 104610, 2020 Apr.
Article in English | MEDLINE | ID: mdl-32032664

ABSTRACT

1,4-Dichlorobutane (1,4-DCB) is used as raw materials for drugs, pesticides, fragrances, and chemical fibers, and being used as a solvent. Its toxicity data was insufficient for screening assessment under the Japanese Chemical Substances Control Law. We conducted toxicity tests and hazard classification for screening assessment 1,4-DCB showed negative in the Ames test, positive in the in vitro chromosomal aberrations test with metabolic activation, and negative in the in vivo mouse bone-marrow micronucleus test. The 28-day repeated-dose toxicity study, where male and female rats were administered 1,4-DCB by gavage at 0, 12, 60, and 300 mg/kg/day, showed significant effects on the liver and pancreas from 12 mg/kg/day and kidney at 300 mg/kg/day. Based on periportal hepatocellular hypertrophy and decreased zymogen granules in pancreas, the lowest observed adverse effect level (LOAEL) of 12 mg/kg/day was obtained. The reproductive/developmental toxicity screening study, in which male and female rats were administered 1,4-DCB by gavage at dose of 0, 2.4, 12, and 60 mg/kg/day for 42-46 days, showed that the delivery index was decreased at 60 mg/kg/day without maternal toxicity. Based on the general toxicity, we classified this chemical as hazard class 2, with a D-value (Derived No Effect Level) of 0.002 mg/kg/day.


Subject(s)
Chromosome Aberrations/drug effects , Hydrocarbons, Halogenated/toxicity , Reproduction/drug effects , Administration, Oral , Animals , CHO Cells , Cells, Cultured , Cricetulus , Dose-Response Relationship, Drug , Female , Hydrocarbons, Halogenated/administration & dosage , Liver/drug effects , Liver/metabolism , Male , Pancreas/drug effects , Pancreas/metabolism , Rats , Rats, Sprague-Dawley , Toxicity Tests
10.
Biometrics ; 75(3): 864-874, 2019 09.
Article in English | MEDLINE | ID: mdl-30666629

ABSTRACT

RNA sequencing allows one to study allelic imbalance of gene expression, which may be due to genetic factors or genomic imprinting (i.e., higher expression of maternal or paternal allele). It is desirable to model both genetic and parent-of-origin effects simultaneously to avoid confounding and to improve the power to detect either effect. In studies of genetically tractable model organisms, separation of genetic and parent-of-origin effects can be achieved by studying reciprocal cross of two inbred strains. In contrast, this task is much more challenging in outbred populations such as humans. To address this challenge, we propose a new framework to combine experimental strategies and novel statistical methods. Specifically, we propose to study genetic and imprinting effects in family trios with RNA-seq data from the children and genotype data from both parents and children, and quantify genetic effects by cis-eQTLs. Towards this end, we have extended our method that studies the eQTLs of RNA-seq data (Sun, Biometrics 2012, 68(1): 1-11) to model both cis-eQTL and parent-of-origin effects, and evaluated its performance using extensive simulations. Since sample size may be limited in family trios, we have developed a data analysis pipeline that borrows information from external data of unrelated individuals for cis-eQTL mapping. We have also collected RNA-seq data from the children of 30 family trios, applied our method to analyze this dataset, and identified some previously reported imprinted genes as well as some new candidates of imprinted genes.


Subject(s)
Genomic Imprinting , Models, Statistical , Quantitative Trait Loci/genetics , Family , Humans , Parents , Sequence Analysis, RNA
11.
Proc Natl Acad Sci U S A ; 113(37): 10322-7, 2016 09 13.
Article in English | MEDLINE | ID: mdl-27578869

ABSTRACT

The 18-kb Xist long noncoding RNA (lncRNA) is essential for X-chromosome inactivation during female eutherian mammalian development. Global structural architecture, cell-induced conformational changes, and protein-RNA interactions within Xist are poorly understood. We used selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) to examine these features of Xist at single-nucleotide resolution both in living cells and ex vivo. The Xist RNA forms complex well-defined secondary structure domains and the cellular environment strongly modulates the RNA structure, via motifs spanning one-half of all Xist nucleotides. The Xist RNA structure modulates protein interactions in cells via multiple mechanisms. For example, repeat-containing elements adopt accessible and dynamic structures that function as landing pads for protein cofactors. Structured RNA motifs create interaction domains for specific proteins and also sequester other motifs, such that only a subset of potential binding sites forms stable interactions. This work creates a broad quantitative framework for understanding structure-function interrelationships for Xist and other lncRNAs in cells.


Subject(s)
Nucleic Acid Conformation , RNA, Long Noncoding/genetics , RNA-Binding Proteins/genetics , Acylation/genetics , Animals , Female , Mice , Mutation , RNA, Long Noncoding/chemistry , RNA-Binding Proteins/chemistry , X Chromosome/genetics , X Chromosome Inactivation/genetics
12.
Regul Toxicol Pharmacol ; 100: 118-126, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30359703

ABSTRACT

2-Ethylbutanal (2-EB) has been used as a flavoring agent. Here, we performed a 13-week subchronic toxicity study of 2-EB in F344 rats. 2-EB was given orally by gavage, using doses of 0, 50, 200 or 800 mg/kg BW/day. Reduced body weight gain was noted in both sexes at 800 mg/kg BW. Hematologic assessment showed a decrease in platelet counts in males at 200 mg/kg BW and both sexes at 800 mg/kg BW. Serum biochemistry demonstrated increases in inorganic phosphorus in both sexes at 200 and 800 mg/kg BW, increases in glucose in females at 200 and 800 mg/kg BW and increases in urea nitrogen in both sexes at 800 mg/kg BW. Regarding organ weights, increases in absolute and relative weights of the liver and kidney with toxicological significance were detected in both sexes at 200 and 800 mg/kg BW. Hepatocellular hypertrophy with eosinophilic granular cytoplasmic changes in the liver were observed in males at 200 mg/kg BW and in both sexes at 800 mg/kg BW. Necrosis/regeneration of proximal tubules in the kidney was detected in females at 800 mg/kg BW. Based on these results, the no-observed-adverse-effect level (NOAEL) of 2-EB was evaluated to be 50 mg/kg BW/day for both sexes.


Subject(s)
Flavoring Agents/toxicity , Animals , Body Weight/drug effects , Female , Kidney/drug effects , Kidney/pathology , Liver/drug effects , Liver/pathology , Male , No-Observed-Adverse-Effect Level , Rats, Inbred F344 , Toxicity Tests, Subchronic
13.
Regul Toxicol Pharmacol ; 96: 64-75, 2018 Jul.
Article in English | MEDLINE | ID: mdl-29705401

ABSTRACT

4-Benzylphenol (CAS No. 101-53-1), a structural analog of bisphenol F, has estrogenic activity in vitro and in vivo, as is the case with bisphenol F. 4-Benzylphenol is used in plastics and during organic synthesis. Since its safety is largely unknown, we conducted toxicity tests as part of screening risk assessment in an existing chemical safety survey program. Based on results of the Ames test and the chromosomal aberration test using Chinese hamster lung cells (OECD TG 471 and 473), 4-benzylphenol was determined to be non-genotoxic in vitro. In a 28-day repeated-dose toxicity study, Crl:CD (SD) rats were administrated 4-benzylphenol by gavage at 0, 30, 150, or 750 mg/kg/day (OECD TG 407). Consequently, body weight was lower in males at 750 mg/kg/day. In the liver, relative organ weights were increased in both sexes at 750 mg/kg/day, and centrilobular hepatocellular hypertrophy was observed in males at 150 and 750 mg/kg/day. In the forestomach, hyperkeratosis and hyperplasia of squamous cells were observed in males at 150 and 750 mg/kg/day, and in females at 750 mg/kg/day. Based on these results, we identified the NOAEL for 4-benzylphenol as 30 mg/kg/day, with a hazard assessment value (D-value) of 0.05 mg/kg/day corresponding to hazard class 3.


Subject(s)
Benzhydryl Compounds/toxicity , Chromosome Aberrations/drug effects , Mutagens/toxicity , Administration, Oral , Animals , Benzhydryl Compounds/administration & dosage , Benzhydryl Compounds/chemistry , CHO Cells , Cricetulus , Dose-Response Relationship, Drug , Female , Male , Molecular Structure , Mutagens/administration & dosage , Mutagens/chemistry , Organ Size/drug effects , Rats , Rats, Sprague-Dawley , Time Factors
14.
Regul Toxicol Pharmacol ; 100: 105-117, 2018 Dec.
Article in English | MEDLINE | ID: mdl-30359701

ABSTRACT

Benzyl salicylate is used as a fragrance ingredient and an ultraviolet light absorber, but its toxicity is unknown. Therefore, toxicity tests and hazard classification were conducted for screening assessment under the Japanese Chemical Substances Control Law. Benzyl salicylate was found to be non-genotoxic in vitro based on the chromosomal aberration test using Chinese hamster lung cells. However, the combined repeated-dose and reproductive/developmental screening toxicity test, in which male and female rats were administered benzyl salicylate by gavage at 0, 30, 100, or 300 mg/kg/day for 42 and 41-46 days, respectively, from 14 days before mating until postnatal Day 4, showed that repeated doses had major effects on the thymus, liver, epididymis, and femur at 100 and/or 300 mg/kg/day. Furthermore, although benzyl salicylate had no effect on the estrus cycle, fertility, corpus lutea, or implantation rate, embryonic resorption, offspring mortality, and neural tube defects were observed at 300 mg/kg/day, and the offspring had lower body weights at 30 and 100 mg/kg/day, suggesting teratogenicity similar to other salicylates. Based on the developmental toxicity, this chemical was classified as hazard class 2, with a lowest observed adverse effect level (LOAEL) of 30 mg/kg/day and a D-value of 0.003 mg/kg/day.


Subject(s)
Odorants , Salicylates/toxicity , Animals , Cell Line , Cricetulus , Dose-Response Relationship, Drug , Embryo Loss/chemically induced , Embryo, Mammalian/drug effects , Female , Fibroblasts/drug effects , Lung/cytology , Male , Mutagenicity Tests , Neural Tube Defects/chemically induced , Rats, Sprague-Dawley , Reproduction/drug effects , Toxicity Tests
15.
J Toxicol Pathol ; 31(2): 95-103, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29749998

ABSTRACT

To clarify the histopathological characteristics of rat endometrial stromal sarcoma (ESS), we morphologically reviewed 12 malignant uterine tumors protruding into the lumen in previous rat carcinogenicity studies. The 12 cases were classified into the following 6 types based on their morphological features: spindle cell and collagen rich type, pleomorphic/spindle cell and compact type, decidual alteration type, histiocytic and multinucleated giant cell mixture type, Antoni A-type schwannoma type, and Antoni B-type schwannoma type. Immunohistochemically, tumor cells in all cases exhibited focal or diffuse positive reactions for vimentin, and 11 of the 12 cases were positive for S-100. Interestingly, 9 cases were positive for desmin or αSMA, indicating tumor cells expressing smooth muscle properties. Both Antoni A- and B-type schwannoma types showed low reactions for both muscle markers. Positive results for estrogen receptor α in the 11 cases suggested that they were derived from endometrial stromal cells. On the basis of their immunohistochemical profiles, they were considered to be derived from endometrial stromal cells while they showed morphological variation. The detection of a basement membrane surrounding tumor cells might not be a definitive indicator for differential diagnosis of ESS from malignant schwannoma. In conclusion, ESS could exhibit wide morphological and immunohistochemical variation including features of schwannoma or smooth muscle tumor.

16.
J Biol Chem ; 291(29): 15320-31, 2016 07 15.
Article in English | MEDLINE | ID: mdl-27226541

ABSTRACT

Based on the mutational effects on the steady-state kinetics of the electron transfer reaction and our NMR analysis of the interaction site (Sakamoto, K., Kamiya, M., Imai, M., Shinzawa-Itoh, K., Uchida, T., Kawano, K., Yoshikawa, S., and Ishimori, K. (2011) Proc. Natl. Acad. Sci. U.S.A. 108, 12271-12276), we determined the structure of the electron transfer complex between cytochrome c (Cyt c) and cytochrome c oxidase (CcO) under turnover conditions and energetically characterized the interactions essential for complex formation. The complex structures predicted by the protein docking simulation were computationally selected and validated by the experimental kinetic data for mutant Cyt c in the electron transfer reaction to CcO. The interaction analysis using the selected Cyt c-CcO complex structure revealed the electrostatic and hydrophobic contributions of each amino acid residue to the free energy required for complex formation. Several charged residues showed large unfavorable (desolvation) electrostatic interactions that were almost cancelled out by large favorable (Columbic) electrostatic interactions but resulted in the destabilization of the complex. The residual destabilizing free energy is compensated by the van der Waals interactions mediated by hydrophobic amino acid residues to give the stabilized complex. Thus, hydrophobic interactions are the primary factors that promote complex formation between Cyt c and CcO under turnover conditions, whereas the change in the electrostatic destabilization free energy provides the variance of the binding free energy in the mutants. The distribution of favorable and unfavorable electrostatic interactions in the interaction site determines the orientation of the binding of Cyt c on CcO.


Subject(s)
Cytochromes c/chemistry , Electron Transport Complex IV/chemistry , Molecular Docking Simulation , Mutation, Missense , Amino Acid Substitution , Animals , Cattle , Cytochromes c/genetics , Electron Transport Complex IV/genetics , Humans
17.
Toxicol Pathol ; 45(4): 493-505, 2017 06.
Article in English | MEDLINE | ID: mdl-28580885

ABSTRACT

We previously reported the contribution of constitutive androstane receptor (CAR) in cytotoxicity-related hepatocarcinogenesis induced by oxadiazon (OX) or acifluorfen (ACI), two pesticides categorized as protoporphyrinogen oxidase (PROTOX) inhibitors. The molecular characteristics of preneoplastic and neoplastic lesions induced by OX and ACI were immunohistochemically compared to those by phenobarbital (PB), a typical CAR activator, in wild-type (WT) and CAR knockout (CARKO) mice after diethylnitrosamine initiation. We focused on changes in ß-catenin and its transcriptional product glutamine synthetase (GS). In PB-promoted foci and adenomas, nuclear accumulation of mutated ß-catenin was increased with high frequency. PB treatment also increased the multiplicity and area of GS-positive foci and adenomas in WT mice. No foci and adenomas showed nuclear accumulation of ß-catenin and expression of GS in CARKO mice, similar to both genotypes of mice treated with OX and ACI. Interestingly, hepatocellular carcinoma induced in ACI-treated WT mice showed nuclear accumulation of ß-catenin and was positive for GS. Our results indicated that ß-catenin mutations were not involved in early-stage hepatocarcinogenesis induced by PROTOX inhibitors in mice, although activation of ß-catenin and CAR is important in PB-induced tumorigenesis. The significant differences in molecular profiles suggested involvements of multiple mode of actions for hepatocarcinogenesis induced by PROTOX inhibitors.


Subject(s)
Carcinogenesis/genetics , Enzyme Inhibitors/toxicity , Liver Neoplasms, Experimental/genetics , Nitrobenzoates/toxicity , Oxadiazoles/toxicity , beta Catenin/genetics , Animals , Carcinogenesis/chemically induced , Carcinogens/toxicity , Cell Proliferation/drug effects , Constitutive Androstane Receptor , Glutamate-Ammonia Ligase/genetics , Glutamate-Ammonia Ligase/metabolism , Liver/drug effects , Liver/pathology , Liver Neoplasms, Experimental/chemically induced , Male , Mice , Mice, Inbred C3H , Mice, Knockout , Mutation , Phenobarbital/toxicity , Protoporphyrinogen Oxidase/antagonists & inhibitors , Protoporphyrinogen Oxidase/metabolism , Receptors, Cytoplasmic and Nuclear/genetics , Receptors, Cytoplasmic and Nuclear/metabolism
19.
J Toxicol Pathol ; 30(1): 57-62, 2017 Jan.
Article in English | MEDLINE | ID: mdl-28190925

ABSTRACT

Spontaneous massive infarction of mammary gland tumors has been reported to occur infrequently in humans. A subcutaneous mass (18 × 17 × 10 mm) was observed in the right axilla extending to the chest region of a 110-week-old female Wistar Hannover GALAS rat. Histopathologically, a well-circumscribed mass with lobular structures was present in the subcutis. Most of the mass was occupied by extensive coagulative necrosis of neoplastic cells with relatively uniform acinar and ductal structures. Although each necrotic acinar structure was separated by reticular fibers, periacinar stromal collagen fibers were not abundant. Considering the site of occurrence and histological features, the necrotic tissue was diagnosed as adenoma of the mammary gland. The necrotic region lacked hemorrhage and obvious inflammatory cell infiltration, indicating the necrosis was caused by infarction. Although multiple necrosis and focal infarction are occasionally observed in large-sized tumors in rodents, especially in adenocarcinomas, the present case was characteristic, with the massive infarction involving most parts of the tumor despite the relatively small size and low atypia of neoplastic cells. This is a rare case of spontaneous infarcted adenoma of the mammary gland in rats histologically resembling human cases.

20.
J Appl Toxicol ; 36(6): 769-76, 2016 Jun.
Article in English | MEDLINE | ID: mdl-26178146

ABSTRACT

Sulpiride and ethylene glycol monomethyl ether (EGME) are known ovarian toxicants that stimulate prolactin (PRL) secretion, resulting in hypertrophy of the corpora lutea and increased progesterone (P4) production. The purpose of the present study was to investigate how the PRL stimulatory agents affected uterine carcinogenesis and to clarify the effects of PRL on endometrial adenocarcinoma progression in rats. Ten-week-old female Donryu rats were treated once with N-ethyl-N'-nitro-N-nitrosoguanidine (20 mg kg(-1) ), followed by treatment with sulpiride (200 ppm) or EGME (1250 ppm) from 11 weeks of age to 12 months of age. Sulpiride treatment inhibited the incidence of uterine adenocarcinoma and precancerous lesions of atypical endometrial hyperplasia, whereas EGME had no effect on uterine carcinogenesis. Sulpiride markedly prevented the onset of persistent estrus throughout the study period, and EGME delayed and inhibited the onset of persistent estrus. Moreover, sulpiride-treated animals showed high PRL and P4 serum levels without changes in the levels of estradiol-17ß, low uterine weights and histological luteal cell hypertrophy. EGME did not affect serum PRL and P4 levels. These results suggest that the prolonged low estradiol-17ß to P4 ratio accompanied by persistent estrous cycle abnormalities secondary to the luteal stimulatory effects of PRL may explain the inhibitory effects of sulpiride on uterine carcinogenesis in rats. Copyright © 2015 John Wiley & Sons, Ltd.


Subject(s)
Adenocarcinoma/prevention & control , Anticarcinogenic Agents/therapeutic use , Carcinogenesis/drug effects , Endometrial Neoplasms/prevention & control , Ethylene Glycols/therapeutic use , Prolactin/agonists , Sulpiride/therapeutic use , Adenocarcinoma/blood , Adenocarcinoma/chemically induced , Adenocarcinoma/pathology , Animals , Anticarcinogenic Agents/adverse effects , Carcinogenesis/chemically induced , Carcinogens/chemistry , Carcinogens/toxicity , Endometrial Hyperplasia/blood , Endometrial Hyperplasia/chemically induced , Endometrial Hyperplasia/pathology , Endometrial Hyperplasia/prevention & control , Endometrial Neoplasms/blood , Endometrial Neoplasms/chemically induced , Endometrial Neoplasms/pathology , Endometrium/drug effects , Endometrium/pathology , Estrus/drug effects , Ethylene Glycols/adverse effects , Female , Infertility, Female/blood , Infertility, Female/chemically induced , Infertility, Female/pathology , Infertility, Female/prevention & control , Methylnitronitrosoguanidine/analogs & derivatives , Methylnitronitrosoguanidine/chemistry , Methylnitronitrosoguanidine/toxicity , Organ Size/drug effects , Ovary/drug effects , Ovary/pathology , Precancerous Conditions/blood , Precancerous Conditions/chemically induced , Precancerous Conditions/pathology , Precancerous Conditions/prevention & control , Progesterone/agonists , Progesterone/blood , Progesterone/metabolism , Prolactin/blood , Prolactin/metabolism , Rats, Inbred Strains , Sulpiride/adverse effects , Uterus/drug effects , Uterus/pathology , Weight Gain/drug effects
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