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1.
Nature ; 583(7814): 96-102, 2020 07.
Article in English | MEDLINE | ID: mdl-32581362

ABSTRACT

Most patients with rare diseases do not receive a molecular diagnosis and the aetiological variants and causative genes for more than half such disorders remain to be discovered1. Here we used whole-genome sequencing (WGS) in a national health system to streamline diagnosis and to discover unknown aetiological variants in the coding and non-coding regions of the genome. We generated WGS data for 13,037 participants, of whom 9,802 had a rare disease, and provided a genetic diagnosis to 1,138 of the 7,065 extensively phenotyped participants. We identified 95 Mendelian associations between genes and rare diseases, of which 11 have been discovered since 2015 and at least 79 are confirmed to be aetiological. By generating WGS data of UK Biobank participants2, we found that rare alleles can explain the presence of some individuals in the tails of a quantitative trait for red blood cells. Finally, we identified four novel non-coding variants that cause disease through the disruption of transcription of ARPC1B, GATA1, LRBA and MPL. Our study demonstrates a synergy by using WGS for diagnosis and aetiological discovery in routine healthcare.


Subject(s)
Internationality , National Health Programs , Rare Diseases/diagnosis , Rare Diseases/genetics , Whole Genome Sequencing , Actin-Related Protein 2-3 Complex/genetics , Adaptor Proteins, Signal Transducing/genetics , Alleles , Databases, Factual , Erythrocytes/metabolism , GATA1 Transcription Factor/genetics , Humans , Phenotype , Quantitative Trait Loci , Receptors, Thrombopoietin/genetics , State Medicine , United Kingdom
2.
N Engl J Med ; 385(20): 1868-1880, 2021 11 11.
Article in English | MEDLINE | ID: mdl-34758253

ABSTRACT

BACKGROUND: The U.K. 100,000 Genomes Project is in the process of investigating the role of genome sequencing in patients with undiagnosed rare diseases after usual care and the alignment of this research with health care implementation in the U.K. National Health Service. Other parts of this project focus on patients with cancer and infection. METHODS: We conducted a pilot study involving 4660 participants from 2183 families, among whom 161 disorders covering a broad spectrum of rare diseases were present. We collected data on clinical features with the use of Human Phenotype Ontology terms, undertook genome sequencing, applied automated variant prioritization on the basis of applied virtual gene panels and phenotypes, and identified novel pathogenic variants through research analysis. RESULTS: Diagnostic yields varied among family structures and were highest in family trios (both parents and a proband) and families with larger pedigrees. Diagnostic yields were much higher for disorders likely to have a monogenic cause (35%) than for disorders likely to have a complex cause (11%). Diagnostic yields for intellectual disability, hearing disorders, and vision disorders ranged from 40 to 55%. We made genetic diagnoses in 25% of the probands. A total of 14% of the diagnoses were made by means of the combination of research and automated approaches, which was critical for cases in which we found etiologic noncoding, structural, and mitochondrial genome variants and coding variants poorly covered by exome sequencing. Cohortwide burden testing across 57,000 genomes enabled the discovery of three new disease genes and 19 new associations. Of the genetic diagnoses that we made, 25% had immediate ramifications for clinical decision making for the patients or their relatives. CONCLUSIONS: Our pilot study of genome sequencing in a national health care system showed an increase in diagnostic yield across a range of rare diseases. (Funded by the National Institute for Health Research and others.).


Subject(s)
Genome, Human , Rare Diseases/genetics , Adolescent , Adult , Child , Child, Preschool , Family Characteristics , Female , Genetic Variation , Humans , Male , Middle Aged , Pilot Projects , Polymerase Chain Reaction , Rare Diseases/diagnosis , Sensitivity and Specificity , State Medicine , United Kingdom , Whole Genome Sequencing , Young Adult
3.
Nucleic Acids Res ; 45(D1): D865-D876, 2017 01 04.
Article in English | MEDLINE | ID: mdl-27899602

ABSTRACT

Deep phenotyping has been defined as the precise and comprehensive analysis of phenotypic abnormalities in which the individual components of the phenotype are observed and described. The three components of the Human Phenotype Ontology (HPO; www.human-phenotype-ontology.org) project are the phenotype vocabulary, disease-phenotype annotations and the algorithms that operate on these. These components are being used for computational deep phenotyping and precision medicine as well as integration of clinical data into translational research. The HPO is being increasingly adopted as a standard for phenotypic abnormalities by diverse groups such as international rare disease organizations, registries, clinical labs, biomedical resources, and clinical software tools and will thereby contribute toward nascent efforts at global data exchange for identifying disease etiologies. This update article reviews the progress of the HPO project since the debut Nucleic Acids Research database article in 2014, including specific areas of expansion such as common (complex) disease, new algorithms for phenotype driven genomic discovery and diagnostics, integration of cross-species mapping efforts with the Mammalian Phenotype Ontology, an improved quality control pipeline, and the addition of patient-friendly terminology.


Subject(s)
Biological Ontologies , Computational Biology , Genomics , Phenotype , Algorithms , Computational Biology/methods , Genetic Association Studies/methods , Genomics/methods , Humans , Precision Medicine/methods , Rare Diseases/diagnosis , Rare Diseases/etiology , Software , Translational Research, Biomedical/methods
4.
J Strength Cond Res ; 32(2): 304-312, 2018 Feb.
Article in English | MEDLINE | ID: mdl-29369951

ABSTRACT

Harry, JR, Barker, LA, James, CR, and Dufek, JS. Performance differences among skilled soccer players of different playing positions during vertical jumping and landing. J Strength Cond Res 32(2): 304-312, 2018-Both jumping and landing performance of skilled soccer players is diminished when task demands are increased. However, it is unclear if performance changes are specific to players of certain playing positions. Therefore, we assessed jumping and landing performance among skilled soccer players of different playing positions. Twenty-five National Collegiate Athletic Association (NCAA) Division 1 male soccer players (179.5 ± 7.8 cm, 75.5 ± 7.1 kg, 19.7 ± 1.2 years) performed maximum effort vertical jump landings (VJLs), whereas vertical ground reaction force (vGRF) data were obtained. Participants were stratified into goalkeeping (GK), defensive (DEF), midfield (MID), and attacking (ATT) group according to their primary playing position. One-way analyses of variance (α = 0.05) and effect sizes (ESs; large ≥ 0.80) were used to compare differences among groups. The jumping phase variables evaluated were jump height, unloading and amortization vGRF magnitudes, eccentric rate of force development, and the reactive strength index. Landing phase variables included the peak vGRF magnitude, vGRF loading rate, vGRF attenuation rate, and landing time. No statistically significant differences were detected for any jumping or landing variable (p ≥ 0.05). However, a number of large magnitude differences were detected during landing after ES calculations. Specifically, greater peak vGRF magnitudes were detected in DEF vs. both MID (ES = 1.08) and ATT (ES = 0.93), a greater vGRF loading rate occurred in DEF vs. MID (ES = 0.93), and a greater vGRF attenuation rate occurred in DEF vs. both MID (ES = 1.00) and AT (ES = 0.80). It is concluded that highly skilled soccer players possess position-specific abilities with respect to the landing phase of VJL. Skilled soccer players might experience enhanced training outcomes after VJL training regimens tailored to the specific demands of their primary playing position.


Subject(s)
Athletic Performance/physiology , Soccer/physiology , Adolescent , Exercise Test , Humans , Male , Young Adult
5.
Int J Mol Sci ; 17(2): 159, 2016 Feb 05.
Article in English | MEDLINE | ID: mdl-26861294

ABSTRACT

Saturated stearic acid (SA) induces apoptosis in the human pancreatic ß-cells NES2Y. However, the molecular mechanisms involved are unclear. We showed that apoptosis-inducing concentrations of SA activate the p38 MAPK signaling pathway in these cells. Therefore, we tested the role of p38 MAPK signaling pathway activation in apoptosis induction by SA in NES2Y cells. Crosstalk between p38 MAPK pathway activation and accompanying ERK pathway inhibition after SA application was also tested. The inhibition of p38 MAPK expression by siRNA silencing resulted in a decrease in MAPKAPK-2 activation after SA application, but it had no significant effect on cell viability or the level of phosphorylated ERK pathway members. The inhibition of p38 MAPK activity by the specific inhibitor SB202190 resulted in inhibition of MAPKAPK-2 activation and noticeable activation of ERK pathway members after SA treatment but in no significant effect on cell viability. p38 MAPK overexpression by plasmid transfection produced an increase in MAPKAPK-2 activation after SA exposure but no significant influence on cell viability or ERK pathway activation. The activation of p38 MAPK by the specific activator anisomycin resulted in significant activation of MAPKAPK-2. Concerning the effect on cell viability, application of the activator led to apoptosis induction similar to application of SA (PARP cleavage and caspase-7, -8, and -9 activation) and in inhibition of ERK pathway members. We demonstrated that apoptosis-inducing concentrations of SA activate the p38 MAPK signaling pathway and that this activation could be involved in apoptosis induction by SA in the human pancreatic ß-cells NES2Y. However, this involvement does not seem to play a key role. Crosstalk between p38 MAPK pathway activation and ERK pathway inhibition in NES2Y cells seems likely. Thus, the ERK pathway inhibition by p38 MAPK activation does not also seem to be essential for SA-induced apoptosis.


Subject(s)
Apoptosis , Fatty Acids/metabolism , Insulin-Secreting Cells/metabolism , p38 Mitogen-Activated Protein Kinases/metabolism , Apoptosis/drug effects , Cell Line , Enzyme Activation , Fatty Acids/pharmacology , Gene Expression , Humans , Insulin-Secreting Cells/drug effects , MAP Kinase Signaling System/drug effects , Protein Kinase Inhibitors/pharmacology , Stearic Acids/pharmacology , p38 Mitogen-Activated Protein Kinases/antagonists & inhibitors
6.
Lancet Oncol ; 14(6): 516-24, 2013 May.
Article in English | MEDLINE | ID: mdl-23578724

ABSTRACT

BACKGROUND: Chemoradiation became the standard of care for anal cancer after the ACT I trial. However, only two-thirds of patients achieved local control, with 5-year survival of 50%; therefore, better treatments are needed. We investigated whether replacing mitomycin with cisplatin in chemoradiation improves response, and whether maintenance chemotherapy after chemoradiation improves survival. METHODS: In this 2 × 2 factorial trial, we enrolled patients with histologically confirmed squamous-cell carcinoma of the anus without metastatic disease from 59 centres in the UK. Patients were randomly assigned to one of four groups, to receive either mitomycin (12 mg/m(2) on day 1) or cisplatin (60 mg/m(2) on days 1 and 29), with fluorouracil (1000 mg/m(2) per day on days 1-4 and 29-32) and radiotherapy (50.4 Gy in 28 daily fractions); with or without two courses of maintenance chemotherapy (fluorouracil and cisplatin at weeks 11 and 14). The random allocation was generated by computer and patients assigned by telephone. Randomisation was done by minimisation and stratified by tumour site, T and N stage, sex, age, and renal function. Neither patients nor investigators were masked to assignment. Primary endpoints were complete response at 26 weeks and acute toxic effects (for chemoradiation), and progression-free survival (for maintenance). The primary analyses were done by intention to treat. This study is registered at controlled-trials.com, number 26715889. FINDINGS: We enrolled 940 patients: 472 were assigned to mitomycin, of whom 246 were assigned to no maintenance, 226 to maintenance; 468 were assigned to cisplatin, of whom 246 were assigned to no maintenance, 222 to maintenance. Median follow-up was 5.1 years (IQR 3.9-6.9). 391 of 432 (90.5%) patients in the mitomycin group versus 386 of 431 (89.6%) in the cisplatin group had a complete response at 26 weeks (difference -0.9%, 95% CI -4.9 to 3.1; p=0.64). Overall, toxic effects were similar in each group (334/472 [71%] for mitomycin vs 337/468 [72%] for cisplatin). The most common grade 3-4 toxic effects were skin (228/472 [48%] vs 222/468 [47%]), pain (122/472 [26%] vs 135/468 [29%]), haematological (124/472 [26%] vs 73/468 [16%]), and gastrointestinal (75/472 [16%] vs 85/468 [18%]). 3-year progression-free survival was 74% (95% CI 69-77; maintenance) versus 73% (95% CI 68-77; no maintenance; hazard ratio 0.95, 95% CI 0.75-1.21; p=0.70). INTERPRETATION: The results of our trial--the largest in anal cancer to date--show that fluorouracil and mitomycin with 50.4 Gy radiotherapy in 28 daily fractions should remain standard practice in the UK. FUNDING: Cancer Research UK.


Subject(s)
Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Anus Neoplasms/therapy , Carcinoma, Squamous Cell/therapy , Chemoradiotherapy , Aged , Antineoplastic Combined Chemotherapy Protocols/adverse effects , Anus Neoplasms/mortality , Anus Neoplasms/pathology , Carcinoma, Squamous Cell/mortality , Carcinoma, Squamous Cell/secondary , Cisplatin/administration & dosage , Disease-Free Survival , Dose Fractionation, Radiation , Drug Administration Schedule , Female , Fluorouracil/administration & dosage , Humans , Intention to Treat Analysis , Kaplan-Meier Estimate , Male , Middle Aged , Mitomycin/administration & dosage , Neoplasm Recurrence, Local , Proportional Hazards Models , Time Factors , Treatment Outcome , United Kingdom
7.
Cell Physiol Biochem ; 31(2-3): 277-89, 2013.
Article in English | MEDLINE | ID: mdl-23466956

ABSTRACT

BACKGROUND: Fatty acid-induced apoptosis and ER stress of pancreatic ß-cells contribute to the development of type 2 diabetes, however, the molecular mechanisms involved are unclear. AIMS: In this study we have tested the role of caspase-2 and suggested ER stress mediator JNK in saturated fatty acid-induced apoptosis of the human pancreatic ß-cells NES2Y. RESULTS: We found that stearic acid at apoptosis-inducing concentration activated ER stress signaling pathways, i.e. IRE1α, PERK and ATF6 pathways, in NES2Y cells. During stearic acid-induced apoptosis, JNK inhibition did not decrease the rate of apoptosis nor the activation of caspase-8, -9, -7 and -2 and PARP cleavage. In addition, inhibition of JNK activity did not affect CHOP expression although it did decrease the induction of BiP expression after stearic acid treatment. Caspase-2 silencing had no effect on PARP as well as caspase-8, -9 and -7 cleavage and the induction of CHOP expression, however, it also decreased the induction of BiP expression. Surprisingly, caspase-2 silencing was accompanied by increased phosphorylation of c-Jun. CONCLUSIONS: We have demonstrated that caspase-2 as well as JNK are not key players in apoptosis induction by saturated fatty acids in human pancreatic ß-cells NES2Y. However, they appear to be involved in the modulation of saturated fatty acid-induced ER stress signaling, probably by a mechanism independent of c-Jun phosphorylation.


Subject(s)
Apoptosis/drug effects , Caspase 2/metabolism , Endoplasmic Reticulum Stress/drug effects , JNK Mitogen-Activated Protein Kinases/metabolism , Stearic Acids/pharmacology , Activating Transcription Factor 6/metabolism , Caspase 2/chemistry , Caspase 2/genetics , Caspase 7/metabolism , Caspase 8/metabolism , Caspase 9/metabolism , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Endoplasmic Reticulum Chaperone BiP , Heat-Shock Proteins/metabolism , Humans , Insulin-Secreting Cells/cytology , Insulin-Secreting Cells/metabolism , JNK Mitogen-Activated Protein Kinases/antagonists & inhibitors , Phosphorylation , Poly(ADP-ribose) Polymerases/metabolism , RNA Interference , RNA, Small Interfering/metabolism , Regulatory Factor X Transcription Factors , Signal Transduction/drug effects , Transcription Factor CHOP/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism
8.
Biotechnol Genet Eng Rev ; 28: 101-14, 2012.
Article in English | MEDLINE | ID: mdl-22616483

ABSTRACT

Since the advent of islet transplantation, there has been a significant emphasis on the importance of islet purity despite an inevitable associated loss of islet mass during the purification process. One of the key elements of the 'Edmonton Protocol' for islet transplantation published in 2000 was an emphasis on the need for sequential transplants of highly purified islets (averaging 24% beta cell purity) and the close correlation between the numbers of islets transplanted and the success of the procedure. However, the emphasis on islet purity may warrant further consideration as auto transplantation of non-purified islets currently provides the most successful insulin independence rates within the field of islet transplantation. While the role of auto and allo immunity could contribute to the differences in the success rates it is clear that within the clinical setting, significant acinar and ductal contamination is well tolerated. However, one could go further and hypothesize that extra-insular tissue including acinar tissue, ductal tissue, peri-pancreatic lymph nodes and vascular tissue actually confer an advantage to islet survival/function and may even contribute to the insulin secreting capacity of the graft post transplant. As such this review will assess the influence of extra-insular pancreatic tissue on the results of islet transplantation based on published evidence and will also explore the possibility that non-islet pancreatic cells are capable of differentiating into a beta cell phenotype in vivo contributing to an ongoing regeneration of endocrine mass during the period following transplantation.


Subject(s)
Cell Separation/methods , Diabetes Mellitus/therapy , Islets of Langerhans Transplantation/methods , Islets of Langerhans/cytology , Acinar Cells/cytology , Animals , Cell Differentiation , Cell Transdifferentiation , Cricetinae , Diabetes Mellitus/surgery , Graft Survival , Hematopoietic Stem Cells/cytology , Humans , Insulin/metabolism , Insulin Secretion , Islets of Langerhans Transplantation/pathology , Mice , Pancreatic Ducts/cytology , Rats
9.
Cell Physiol Biochem ; 27(5): 525-38, 2011.
Article in English | MEDLINE | ID: mdl-21691070

ABSTRACT

AIMS: In this study we have tested the effect of unsaturated fatty acids on the proapoptotic effects of saturated fatty acids in the human pancreatic ß-cells NES2Y. RESULTS: We found that unsaturated palmitoleic and oleic acid at a concentration of 0.2 mM and higher are able to completely inhibit the proapoptotic effect of their counterpart saturated palmitic and stearic acid at a concentration of 1 mM. Apoptosis induced by stearic acid was associated with significant activation of caspase-6, -7, -9, -2 and -8, but not with significant activation of caspase-3. The activation of caspases was blocked by coincubation with oleic acid. Stearic acid treatment was not associated with a significant change in mitochondrial membrane potential, reactive oxygen species level and with cytochrome c release from mitochondria. Furthermore, stearic acid treatment was not associated with changes in p21(WAF1/CIP1), PIDD, Fas receptor and Fas ligand expression. However, we detected endoplasmic reticulum (ER) stress markers, i. e. a significant upregulation of BiP and CHOP expression as well as XBP1 mRNA splicing. These changes were inhibited by coincubation with oleic acid. CONCLUSION: Presented data indicate that oleic acid inhibits apoptosis induction by stearic acid in NES2Y cells upstream of caspase activation and ER stress induction. It does not involve an interference with the mitochondrial pathway of apoptosis induction, with p53 activation and PIDD expression as well as with Fas receptor and Fas ligand expression.


Subject(s)
Endoplasmic Reticulum/metabolism , Fatty Acids, Monounsaturated/pharmacology , Insulin-Secreting Cells/metabolism , Mitochondria/metabolism , Oleic Acid/pharmacology , Stearic Acids/pharmacology , Up-Regulation/drug effects , Apoptosis/drug effects , Caspases/metabolism , Cell Line, Transformed , Cytochromes c/analysis , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Endoplasmic Reticulum/drug effects , Endoplasmic Reticulum Chaperone BiP , Enzyme Activation , Flow Cytometry , Gene Expression/drug effects , Heat-Shock Proteins/genetics , Heat-Shock Proteins/metabolism , Humans , Insulin-Secreting Cells/cytology , Insulin-Secreting Cells/drug effects , Membrane Potential, Mitochondrial/drug effects , Mitochondria/drug effects , RNA Splicing , RNA, Messenger , Regulatory Factor X Transcription Factors , Stress, Physiological , Transcription Factor CHOP/genetics , Transcription Factor CHOP/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , X-Box Binding Protein 1
10.
Lancet ; 370(9582): 143-152, 2007 Jul 14.
Article in English | MEDLINE | ID: mdl-17630037

ABSTRACT

BACKGROUND: In the non-curative setting, the sequence in which anticancer agents are used, singly or in combination, may be important if patients are to receive the maximum period of disease control with the minimum of adverse effects. We compared sequential and combination chemotherapy strategies in patients with unpretreated advanced or metastatic colorectal cancer, who were regarded as not potentially curable irrespective of response. METHODS: We studied patients with advanced colorectal cancer, starting treatment with non-curative intent. 2135 unpretreated patients were randomly assigned to three treatment strategies in the ratio 1:1:1. Strategy A (control group) was single-agent fluorouracil (given with levofolinate over 48 h every 2 weeks) until failure, then single-agent irinotecan. Strategy B was fluorouracil until failure, then combination chemotherapy. Strategy C was combination chemotherapy from the outset. Within strategies B and C, patients were randomly assigned to receive, as the combination regimen, fluorouracil plus irinotecan (groups B-ir and C-ir) or fluorouracil plus oxaliplatin (groups B-ox and C-ox). The primary endpoint was overall survival, analysed by intention to treat. This study is registered as an International Standard Randomised Controlled Trial, number ISRCTN 79877428. RESULTS: Median survival of patients allocated to control strategy A was 13.9 months. Median survival of each of the other groups was longer (B-ir 15.0, B-ox 15.2, C-ir 16.7, and C-ox 15.4 months). However, log-rank comparison of each group against control showed that only C-ir--the first-line combination strategy including irinotecan--satisfied the statistical test for superiority (p=0.01). Overall comparison of strategy B with strategy C was within the predetermined non-inferiority boundary of HR=1.18 or less (HR=1.06, 90% CI 0.97-1.17). INTERPRETATION: Our data challenge the assumption that, in this non-curative setting, maximum tolerable treatment must necessarily be used first-line. The staged approach of initial single-agent treatment upgraded to combination when required is not worse than first-line combination, and is an alternative option for discussion with patients.


Subject(s)
Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Colorectal Neoplasms/drug therapy , Aged , Antineoplastic Combined Chemotherapy Protocols/adverse effects , Camptothecin/administration & dosage , Camptothecin/analogs & derivatives , Colorectal Neoplasms/mortality , Colorectal Neoplasms/pathology , Drug Administration Schedule , Female , Fluorouracil/administration & dosage , Humans , Irinotecan , Leucovorin/administration & dosage , Male , Middle Aged , Organoplatinum Compounds/administration & dosage , Oxaliplatin , Prognosis , Survival Analysis
11.
J Immunol Methods ; 339(2): 115-23, 2008 Dec 31.
Article in English | MEDLINE | ID: mdl-18786540

ABSTRACT

Previously we have described studies on in vitro pentamer assembly of Escherichia coli (E. coli) derived heat-labile enterotoxin B subunit (EtxB) using conventional monoclonal antibodies (Amin et al., JBC 1995: 270, 20143-50 and Chung et al., JBC 2006: 281, 39465-70). To extend these studies further we have used phage-display to select single-chain Fragment variable (scFv) antibodies against different forms of the B-subunit. Two clones exhibiting strong and differential binding were chosen for detailed characterization. A comprehensive sequence analysis was performed to assign the framework and complementary-determining regions and a nonsense mutation present in one of these (scFv-B1.3.9) was corrected. Binding analysis showed that scFv-B1.3.9 bound in ELISA to both heat-denatured monomeric B-subunits (EtxB1) and also displayed cross-reactivity towards pentameric EtxB (EtxB5), although there was no reactivity towards monoganglioside (GM1) captured EtxB5. Another antibody (scFv-B5.2.14) had a different reactivity profile and, in ELISA, bound only to EtxB5 but not to EtxB1 or to EtxB5 captured via GM1. Surprisingly, in competition experiments, the assembled pentameric B-subunit inhibited binding of scFv-B5.2.14 to immobilized EtxB5 only weakly, whereas reduced, but not oxidized, monomeric EtxB1 was an efficient competitor. These results clearly demonstrate that B1.3.9 and B5.2.14 have different specificities for cryptic epitopes not accessible in the fully assembled GM1 bound pentameric form of EtxB. Taken together our results show that we were able to successfully isolate and characterize recombinant scFvs that differentially recognize diverse denatured forms or assembly intermediates of the heat-labile enterotoxin B subunit of E. coli.


Subject(s)
Antibodies, Monoclonal/immunology , Antibody Specificity/immunology , Bacterial Toxins/immunology , Enterotoxins/immunology , Epitopes/immunology , Escherichia coli Proteins/immunology , Escherichia coli/immunology , Immunoglobulin Variable Region/immunology , Animals , Antibodies, Monoclonal/chemistry , Antibodies, Monoclonal/genetics , Antibody Specificity/genetics , Bacterial Toxins/analysis , Bacterial Toxins/genetics , Binding Sites, Antibody/genetics , Binding Sites, Antibody/immunology , Cross Reactions/genetics , Cross Reactions/immunology , Enterotoxins/analysis , Enterotoxins/genetics , Enzyme-Linked Immunosorbent Assay/methods , Epitopes/chemistry , Epitopes/genetics , Escherichia coli/chemistry , Escherichia coli/genetics , Escherichia coli Proteins/analysis , Escherichia coli Proteins/genetics , G(M1) Ganglioside/chemistry , G(M1) Ganglioside/genetics , G(M1) Ganglioside/immunology , Immunoglobulin Variable Region/chemistry , Immunoglobulin Variable Region/genetics , Protein Structure, Quaternary/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Sequence Analysis, DNA/methods
12.
Life Sci ; 82(13-14): 684-91, 2008 Mar 26.
Article in English | MEDLINE | ID: mdl-18272185

ABSTRACT

We tested the effects of various types of fatty acids, differing in the degree of saturation and in the cis/trans configuration of the double bond, on the growth and viability of NES2Y cells (a human pancreatic beta-cell line). We found that during a 48-hour incubation period, saturated fatty acids, i.e. palmitic and stearic acids, at a physiologically relevant concentration of 1 mM and higher concentrations induced death of the beta-cells while their counterpart unsaturated fatty acids, i.e. palmitoleic and oleic acids, did not induce cell death at concentrations up to 3 mM. We also found that unsaturated elaidic acid with a trans double bond exerted significant inhibition of growth of the beta-cells at a concentration approximately ten times lower, i.e. 0.1 mM vs. 1 mM, than counterpart oleic acid with a cis double bond. This is the first direct evidence that a trans unsaturated fatty acid is significantly more effective in inhibiting beta-cell growth than a counterpart cis unsaturated fatty acid. Furthermore, we newly demonstrated that beta-cell death induced by saturated fatty acids is related to significant increase of caspase-2 activity (2 to 5-fold increase) but not to caspase-3 activation. The growth-inhibiting effect of saturated fatty acids at concentrations lower than death-inducing concentrations correlates with certain increase of caspase-2 activity.


Subject(s)
Cell Proliferation/drug effects , Fatty Acids/pharmacology , Insulin-Secreting Cells/drug effects , Caspase 2/metabolism , Caspase 3/metabolism , Cell Culture Techniques , Cell Line , Cell Survival/drug effects , Culture Media, Serum-Free , Dose-Response Relationship, Drug , Fatty Acids/chemistry , Fatty Acids, Unsaturated/chemistry , Fatty Acids, Unsaturated/pharmacology , Humans , Insulin-Secreting Cells/cytology , Insulin-Secreting Cells/enzymology , Stereoisomerism , Structure-Activity Relationship
13.
Cell Transplant ; 27(6): 902-906, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29852747

ABSTRACT

Chronic pancreatitis (CP) is an inflammatory disease that causes progressive damage to the pancreatic parenchyma with irreversible morphological changes and fibrotic replacement of the gland. The risk factors associated with developing CP have been described as toxic (e.g., alcohol and tobacco); idiopathic (e.g., unknown); genetic, autoimmune, recurrent acute pancreatitis, and obstructive (the TIGAR-O system). Upon histological screening of the pancreata from a cohort of CP patients who had undergone pancreatectomy for the treatment of intractable pain in Leicester, UK, one sample showed a striking change in the morphological balance toward an endocrine phenotype, most notably there was evidence of substantial α cell genesis enveloping entire cross sections of ductal epithelium and the presence of α cells within the ductal lumens. This patient had previously undergone a partial pancreatectomy, had severe sclerosing CP, an exceptionally low body mass index (15.2), and diabetes at the time the pancreas was removed, and although these factors have been shown to induce tissue remodeling, such high levels of α cells was an unusual finding within our series of patients. Due to the fact that α cells have been shown to be the first endocrine cell type that emerges during islet neogenesis, future research profiling the factors that caused such marked α cell genesis may prove useful in the field of islet transplantation.


Subject(s)
Glucagon-Secreting Cells/pathology , Pancreatic Ducts/pathology , Pancreatitis, Chronic/pathology , Adolescent , Adult , Aged , Body Mass Index , Cohort Studies , Humans , Male , Middle Aged , Pancreatectomy , Pancreatitis, Chronic/surgery , Young Adult
14.
Frontline Gastroenterol ; 9(4): 250-255, 2018 Oct.
Article in English | MEDLINE | ID: mdl-30245786

ABSTRACT

BACKGROUND: Interest in the use of faecal microbiota transplantation (FMT) in inflammatory bowel disease (IBD) has increased following outcomes in patients with Clostridioides difficile infection (CDI). While research exploring clinician awareness and attitude towards the use of FMT in CDI has been carried out, data for IBD are currently lacking. OBJECTIVE: To assess the perceptions of gastroenterologists and current practice relating to FMT as a treatment for IBD in the UK. DESIGN: A web-based survey (Snap Survey software) was distributed through the British Society of Gastroenterology (BSG) and British Society of Paediatric Gastroenterology, Hepatology and Nutrition e-newsletters, and at the BSG Conference in June 2017. RESULTS: 61 respondents completed the survey including presubspecialty trainees, gastroenterology specialists, associate specialists and consultants. Most (95%; n=58) respondents stated that they had heard of FMT being used as a treatment for IBD prior to participating in the survey. Based on current evidence, 34% (n=21) of respondents would consider using FMT in patients with IBD, 26% (n=16) would not and 39% (n=24) were undecided. When asked to rank routes of delivery in terms of preference, nasogastric tube was the least preferred route (39%; n=24) and oral capsule was the most preferred route (34%; n=21). CONCLUSIONS: A clear majority of UK gastroenterologists recognise FMT as a potential treatment for IBD; however, uptake is limited. A proportion of clinicians would consider FMT in IBD and the majority would consider entering patients into clinical trials. Future work should explore the utility and efficacy of oral FMT capsules in IBD.

15.
In Vitro Cell Dev Biol Anim ; 43(7): 210-4, 2007.
Article in English | MEDLINE | ID: mdl-17846858

ABSTRACT

Islet cells derived from patients with persistent hyperinsulinemic hypoglycemia of infancy (PHHI) have the ability to grow readily in simple culture media. However, as with primary islets and cell lines, they lose hormone expression upon growth. In this study, we have investigated the role of three-dimensional cell-to-cell contact in the reinitiation of hormone expression in growth dedifferentiated PHHI-derived cells. Two main methods of cell aggregation were studied; the promotion of pseudoislets through petri dish culture and the creation of cell aggregates in the microgravity environment of the high aspect ratio vessel (HARV). Immunohistochemical analysis and ELISA assay showed that petri dish culture did not re-establish endocrine expression in any of the five cultures tested. However, through HARV technology, we have demonstrated that it is possible to reactivate insulin, glucagon, somatostatin, and GAD expression in PHHI-derived cells that had previously stopped expressing these markers. These results indicate that the unique environment of the HARV can be conducive to the upregulation of endocrine expression of islet-derived cells and optimization of culture conditions may prove useful in the sphere of beta cell proliferation.


Subject(s)
Cell Culture Techniques , Congenital Hyperinsulinism , Glucagon/metabolism , Insulin/metabolism , Islets of Langerhans , Somatostatin/metabolism , Cell Culture Techniques/instrumentation , Cells, Cultured , Congenital Hyperinsulinism/physiopathology , Glucagon/genetics , Humans , Insulin/genetics , Islets of Langerhans/cytology , Islets of Langerhans/physiology , Somatostatin/genetics , Up-Regulation
16.
Cell Transplant ; 15(5): 399-410, 2006.
Article in English | MEDLINE | ID: mdl-16970282

ABSTRACT

B7-H4, a recently described member of the B7 family of cosignal molecules, is thought to be involved in the regulation of cellular and humoral immune responses through receptors on activated T and B cells. Human islet cells express positive B7-H4 mRNA in RT-PCR assays, but not B7-H4 protein on cell surface in flow cytometric analyses. To investigate the regulatory effects of activation of the B7-H4 pathway on the function of activated T cells of patients with type 1 diabetes (T1D), we have used our in vitro human experimental system, including human beta-cell antigen-specific T-cell clones and human beta-cell lines CM and HP62, as well as primary islet cells. B7-H4.Ig protein was purified from the culture supernatant of 293T cells transfected by a B7-H4.Ig plasmid (pMIgV, containing a human B7-H4 cDNA and a mouse IgG2a Fc cDNA). Our preliminary studies showed that immobilized fusion protein human B7-H4.Ig (coated with 5 microg/ml for 2 h at 37 degrees C), but not control Ig, clearly inhibited the proliferation of activated CD4+ and CD8+ T cells of patients induced by anti-CD3 antibody in CFSE assays. B7-H4.Ig also arrested cell cycle progression of T cells in G0/G1 phase and induced T-cell apoptosis as measured by BrdU-7-AAD flow cytometric analysis. To determine the cytoprotective effects of B7-H4, we developed transfectants of human beta-cell lines CM and HP62 and islet cells transfected with the B7-H4.Ig plasmid, using empty vector transfectants as controls. The results demonstrate that cell-associated B7-H4.Ig expressed on human beta-cells clearly inhibits the cytotoxicity of the T-cell clones to targeted human beta-cells in 51Cr release cytotoxicity assays. Activation of the B7-H4 pathway may represent a novel immunotherapeutic approach to inhibit T-cell responses for the prevention of beta-cell destruction in T1D.


Subject(s)
B7-1 Antigen/metabolism , Insulin-Secreting Cells/immunology , T-Lymphocytes/immunology , Adolescent , Adult , Antibodies, Monoclonal/pharmacology , Apoptosis/drug effects , B7-1 Antigen/genetics , B7-1 Antigen/immunology , CD3 Complex/immunology , CD4-Positive T-Lymphocytes/cytology , CD4-Positive T-Lymphocytes/drug effects , CD8-Positive T-Lymphocytes/cytology , CD8-Positive T-Lymphocytes/drug effects , Cell Cycle/drug effects , Cell Division/drug effects , Cell Line , Cells, Cultured , Cytotoxicity, Immunologic/drug effects , Female , Humans , Immunoglobulins/metabolism , Immunoglobulins/physiology , Insulin-Secreting Cells/cytology , Insulin-Secreting Cells/metabolism , Interferon-gamma/metabolism , Male , RNA, Messenger/genetics , RNA, Messenger/metabolism , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Recombinant Fusion Proteins/pharmacology , Reverse Transcriptase Polymerase Chain Reaction , T-Lymphocytes/cytology , T-Lymphocytes/metabolism , V-Set Domain-Containing T-Cell Activation Inhibitor 1
17.
BMC Surg ; 6: 9, 2006 Jun 26.
Article in English | MEDLINE | ID: mdl-16800889

ABSTRACT

BACKGROUND: Peliosis is a rare condition characterised by multiple cyst-like, blood-filled cavities within the parenchyma of solid organs. Most commonly affecting the liver, isolated splenic peliosis is an even more unique phenomenon. Patients with the condition are often asymptomatic. However, this potentially lethal condition can present with spontaneous organ rupture. We present two such cases, discuss their management and review what is currently known in the existing literature. CASE PRESENTATION: A previously well twenty-six year old woman presented with abdominal pain following a trivial episode of coughing. A diagnosis of spontaneous splenic rupture was made following clinical and radiological examination. She underwent emergency splenectomy and made a full, uneventful recovery. Histopathological examination confirmed splenic peliosis. The second case describes an eighty six year old lady who sustained a trivial fall and developed pain in her left side. A CT confirmed splenic rupture. She became haemodynamically unstable during her admission and underwent emergency splenectomy. Histopathological examination revealed splenic peliosis. She went on to make an uneventful recovery. CONCLUSION: Splenic peliosis is very rare. It has a number of associations including immunosuppression, drug therapy and infection. Although patients are often asymptomatic, life-threatening spontaneous organ rupture may occur. If the diagnosis of peliosis is confirmed, additional investigations should be considered to detect its presence in other organs. Furthermore, the presence of the condition may be relevant if further medical or surgical intervention is planned.


Subject(s)
Splenic Diseases/diagnosis , Vascular Diseases/diagnosis , Adult , Aged, 80 and over , Cysts , Female , Humans , Rupture, Spontaneous , Splenectomy , Splenic Diseases/surgery , Vascular Diseases/surgery
18.
Hum Immunol ; 66(3): 274-84, 2005 Mar.
Article in English | MEDLINE | ID: mdl-15784465

ABSTRACT

To better understand the cytokine death-signal transduction pathways in human beta cells, we investigated the inhibitory effects of Bcl-2 (protooncogene bcl-2) and X-linked inhibitor of apoptosis (XIAP) on TRAIL (TNF-related apoptosis-inducing ligand)-induced human beta-cell destruction. A panel of Bcl-2-overexpressing transfectants of the human beta-cell lines NES2Y and CM was developed by transfection with a pEFpGKpuro vector containing Bcl-2 or an empty vector as a control. TRAIL-induced cytotoxicity and apoptosis of Bcl-2-overexpressing beta cells were clearly decreased, in comparison with wild-type cells and the empty vector transfectants. XIAP-overexpressing CM, NES2Y, and primary islet cells were generated by exposing cells to recombinant adenovirus-expressing XIAP (AdXIAP) or AdLacz as a control. TRAIL-induced cytotoxicity and apoptosis of CM, NES2Y, and primary islet cells infected with AdXIAP were clearly reduced compared with controls. Interestingly, cytotoxicity induced by TRAIL in human beta cells transfected with both Bcl-2 and AdXIAP was much less than that observed in human beta cells transfected with either Bcl-2 or XIAP alone (p < 0.005 in CM and p < 0.03 in NES2Y). Overexpression of both Bcl-2 and XIAP inhibited TRAIL-induced activation of caspases as well as TRAIL-mediated damage of mitochondrial function in cells, suggesting possible regulatory mechanisms. These results indicate that Bcl-2 and XIAP synergistically inhibit TRAIL-mediated death pathways in human beta cells.


Subject(s)
Apoptosis/physiology , Islets of Langerhans/metabolism , Membrane Glycoproteins/metabolism , Proteins/metabolism , Proto-Oncogene Proteins c-bcl-2/metabolism , Tumor Necrosis Factor-alpha/metabolism , Apoptosis Regulatory Proteins , Caspase 7 , Caspase 9 , Caspases/metabolism , Diabetes Mellitus, Type 1/etiology , Diabetes Mellitus, Type 1/metabolism , Humans , Mitochondria/metabolism , TNF-Related Apoptosis-Inducing Ligand , X-Linked Inhibitor of Apoptosis Protein
19.
Nurs Times ; 101(48): 28-32, 2005.
Article in English | MEDLINE | ID: mdl-16350516

ABSTRACT

The UK is facing a major shortage of registered nurses. One government strategy for addressing this shortage has been the nationwide increase in the nursing student population. Large student cohorts have resulted in placements being overcrowded with students and, as a consequence, the quality of learning experiences has diminished. A mental health NHS trust in London in partnership with local higher education institutes has created a framework to relieve the pressure on placements. This article discusses the implementation of the framework and outlines the results, challenges and recommendations.


Subject(s)
Employment , Nurses/supply & distribution , Students, Nursing , Education, Nursing , United States
20.
Nurs Times ; 101(40): 34-6, 2005.
Article in English | MEDLINE | ID: mdl-16250539

ABSTRACT

Interprofessional education among health care professionals has been recommended as a way to improve the quality of services. This paper analyses the results of an evaluative study of a practitioner-led, interprofessional programme for preregistration health care students, the Trust-Based Education and Training Programme, developed by South West London and St George's Mental Health NHS Trust in collaboration with several local universities.


Subject(s)
Education, Nursing, Baccalaureate/organization & administration , Intellectual Disability/nursing , Models, Educational , Occupational Therapy/education , Patient Care Team/organization & administration , Psychiatric Nursing/education , Psychology, Clinical/education , Attitude of Health Personnel , Curriculum , Faculty, Nursing , Humans , London , Program Evaluation
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