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1.
Nat Methods ; 16(4): 341-350, 2019 04.
Article in English | MEDLINE | ID: mdl-30858600

ABSTRACT

Brain atlases enable the mapping of labeled cells and projections from different brains onto a standard coordinate system. We address two issues in the construction and use of atlases. First, expert neuroanatomists ascertain the fine-scale pattern of brain tissue, the 'texture' formed by cellular organization, to define cytoarchitectural borders. We automate the processes of localizing landmark structures and alignment of brains to a reference atlas using machine learning and training data derived from expert annotations. Second, we construct an atlas that is active; that is, augmented with each use. We show that the alignment of new brains to a reference atlas can continuously refine the coordinate system and associated variance. We apply this approach to the adult murine brainstem and achieve a precise alignment of projections in cytoarchitecturally ill-defined regions across brains from different animals.


Subject(s)
Brain Mapping/methods , Brain/diagnostic imaging , Computational Biology/methods , Image Processing, Computer-Assisted/methods , Algorithms , Animals , Brain/anatomy & histology , Brain Stem/diagnostic imaging , Machine Learning , Magnetic Resonance Imaging , Male , Mice , Mice, Inbred C57BL , Motor Neurons , Neuroanatomy , Neurons , Probability , Spinal Cord/diagnostic imaging
2.
Proc Natl Acad Sci U S A ; 115(32): E7615-E7623, 2018 08 07.
Article in English | MEDLINE | ID: mdl-30026198

ABSTRACT

The optic tectum (TeO), or superior colliculus, is a multisensory midbrain center that organizes spatially orienting responses to relevant stimuli. To define the stimulus with the highest priority at each moment, a network of reciprocal connections between the TeO and the isthmi promotes competition between concurrent tectal inputs. In the avian midbrain, the neurons mediating enhancement and suppression of tectal inputs are located in separate isthmic nuclei, facilitating the analysis of the neural processes that mediate competition. A specific subset of radial neurons in the intermediate tectal layers relay retinal inputs to the isthmi, but at present it is unclear whether separate neurons innervate individual nuclei or a single neural type sends a common input to several of them. In this study, we used in vitro neural tracing and cell-filling experiments in chickens to show that single neurons innervate, via axon collaterals, the three nuclei that comprise the isthmotectal network. This demonstrates that the input signals representing the strength of the incoming stimuli are simultaneously relayed to the mechanisms promoting both enhancement and suppression of the input signals. By performing in vivo recordings in anesthetized chicks, we also show that this common input generates synchrony between both antagonistic mechanisms, demonstrating that activity enhancement and suppression are closely coordinated. From a computational point of view, these results suggest that these tectal neurons constitute integrative nodes that combine inputs from different sources to drive in parallel several concurrent neural processes, each performing complementary functions within the network through different firing patterns and connectivity.


Subject(s)
Behavior, Animal/physiology , Chickens/physiology , Neurons/physiology , Superior Colliculi/physiology , Visual Pathways/physiology , Animals , Neuroanatomical Tract-Tracing Techniques/methods , Photic Stimulation , Superior Colliculi/cytology
3.
Brain Behav Evol ; 83(1): 1-8, 2014.
Article in English | MEDLINE | ID: mdl-24603302

ABSTRACT

Efforts to understand nervous system structure and function have received new impetus from the federal Brain Research through Advancing Innovative Neurotechnologies (BRAIN) Initiative. Comparative analyses can contribute to this effort by leading to the discovery of general principles of neural circuit design, information processing, and gene-structure-function relationships that are not apparent from studies on single species. We here propose to extend the comparative approach to nervous system 'maps' comprising molecular, anatomical, and physiological data. This research will identify which neural features are likely to generalize across species, and which are unlikely to be broadly conserved. It will also suggest causal relationships between genes, development, adult anatomy, physiology, and, ultimately, behavior. These causal hypotheses can then be tested experimentally. Finally, insights from comparative research can inspire and guide technological development. To promote this research agenda, we recommend that teams of investigators coalesce around specific research questions and select a set of 'reference species' to anchor their comparative analyses. These reference species should be chosen not just for practical advantages, but also with regard for their phylogenetic position, behavioral repertoire, well-annotated genome, or other strategic reasons. We envision that the nervous systems of these reference species will be mapped in more detail than those of other species. The collected data may range from the molecular to the behavioral, depending on the research question. To integrate across levels of analysis and across species, standards for data collection, annotation, archiving, and distribution must be developed and respected. To that end, it will help to form networks or consortia of researchers and centers for science, technology, and education that focus on organized data collection, distribution, and training. These activities could be supported, at least in part, through existing mechanisms at NSF, NIH, and other agencies. It will also be important to develop new integrated software and database systems for cross-species data analyses. Multidisciplinary efforts to develop such analytical tools should be supported financially. Finally, training opportunities should be created to stimulate multidisciplinary, integrative research into brain structure, function, and evolution.


Subject(s)
Biological Evolution , Brain Mapping , Brain/anatomy & histology , Brain/physiology , Anatomy, Comparative , Animals , Humans , Species Specificity
4.
J Comp Neurol ; 532(5): e25620, 2024 May.
Article in English | MEDLINE | ID: mdl-38733146

ABSTRACT

We used diverse methods to characterize the role of avian lateral spiriform nucleus (SpL) in basal ganglia motor function. Connectivity analysis showed that SpL receives input from globus pallidus (GP), and the intrapeduncular nucleus (INP) located ventromedial to GP, whose neurons express numerous striatal markers. SpL-projecting GP neurons were large and aspiny, while SpL-projecting INP neurons were medium sized and spiny. Connectivity analysis further showed that SpL receives inputs from subthalamic nucleus (STN) and substantia nigra pars reticulata (SNr), and that the SNr also receives inputs from GP, INP, and STN. Neurochemical analysis showed that SpL neurons express ENK, GAD, and a variety of pallidal neuron markers, and receive GABAergic terminals, some of which also contain DARPP32, consistent with GP pallidal and INP striatal inputs. Connectivity and neurochemical analysis showed that the SpL input to tectum prominently ends on GABAA receptor-enriched tectobulbar neurons. Behavioral studies showed that lesions of SpL impair visuomotor behaviors involving tracking and pecking moving targets. Our results suggest that SpL modulates brainstem-projecting tectobulbar neurons in a manner comparable to the demonstrated influence of GP internus on motor thalamus and of SNr on tectobulbar neurons in mammals. Given published data in amphibians and reptiles, it seems likely the SpL circuit represents a major direct pathway-type circuit by which the basal ganglia exerts its motor influence in nonmammalian tetrapods. The present studies also show that avian striatum is divided into three spatially segregated territories with differing connectivity, a medial striato-nigral territory, a dorsolateral striato-GP territory, and the ventrolateral INP motor territory.


Subject(s)
Basal Ganglia , Neural Pathways , Animals , Basal Ganglia/metabolism , Neural Pathways/physiology , Neural Pathways/chemistry , Male , Neurons/metabolism , Globus Pallidus/metabolism , Globus Pallidus/chemistry , Globus Pallidus/anatomy & histology
5.
Proc Natl Acad Sci U S A ; 107(28): 12676-81, 2010 Jul 13.
Article in English | MEDLINE | ID: mdl-20616034

ABSTRACT

The mammalian neocortex mediates complex cognitive behaviors, such as sensory perception, decision making, and language. The evolutionary history of the cortex, and the cells and circuitry underlying similar capabilities in nonmammals, are poorly understood, however. Two distinct features of the mammalian neocortex are lamination and radially arrayed columns that form functional modules, characterized by defined neuronal types and unique intrinsic connections. The seeming inability to identify these characteristic features in nonmammalian forebrains with earlier methods has often led to the assumption of uniqueness of neocortical cells and circuits in mammals. Using contemporary methods, we demonstrate the existence of comparable columnar functional modules in laminated auditory telencephalon of an avian species (Gallus gallus). A highly sensitive tracer was placed into individual layers of the telencephalon within the cortical region that is similar to mammalian auditory cortex. Distribution of anterograde and retrograde transportable markers revealed extensive interconnections across layers and between neurons within narrow radial columns perpendicular to the laminae. This columnar organization was further confirmed by visualization of radially oriented axonal collaterals of individual intracellularly filled neurons. Common cell types in birds and mammals that provide the cellular substrate of columnar functional modules were identified. These findings indicate that laminar and columnar properties of the neocortex are not unique to mammals and may have evolved from cells and circuits found in more ancient vertebrates. Specific functional pathways in the brain can be analyzed in regard to their common phylogenetic origins, which introduces a previously underutilized level of analysis to components involved in higher cognitive functions.


Subject(s)
Auditory Cortex/physiology , Animals , Axons/physiology , Biological Evolution , Brain , Cerebral Cortex/physiology , Chickens , Mammals , Neocortex , Neurons/physiology , Sensation , Sensory Receptor Cells , Telencephalon , Vertebrates
6.
J Neurosci ; 29(46): 14553-70, 2009 Nov 18.
Article in English | MEDLINE | ID: mdl-19923289

ABSTRACT

It is well known that the density of neurons varies within the adult brain. In neocortex, this includes variations in neuronal density between different lamina as well as between different regions. Yet the concomitant variation of the microvessels is largely uncharted. Here, we present automated histological, imaging, and analysis tools to simultaneously map the locations of all neuronal and non-neuronal nuclei and the centerlines and diameters of all blood vessels within thick slabs of neocortex from mice. Based on total inventory measurements of different cortical regions ( approximately 10(7) cells vectorized across brains), these methods revealed: (1) In three dimensions, the mean distance of the center of neuronal somata to the closest microvessel was 15 mum. (2) Volume samples within lamina of a given region show that the density of microvessels does not match the strong laminar variation in neuronal density. This holds for both agranular and granular cortex. (3) Volume samples in successive radii from the midline to the ventral-lateral edge, where each volume summed the number of cells and microvessels from the pia to the white matter, show a significant correlation between neuronal and microvessel densities. These data show that while neuronal and vascular densities do not track each other on the 100 mum scale of cortical lamina, they do track each other on the 1-10 mm scale of the cortical mantle. The absence of a disproportionate density of blood vessels in granular lamina is argued to be consistent with the initial locus of functional brain imaging signals.


Subject(s)
Cell Nucleus , Cerebral Cortex/cytology , Microvessels/cytology , Neurons/cytology , Animals , Cell Count/methods , Cell Nucleus/metabolism , Cerebral Cortex/anatomy & histology , Mice , Mice, Inbred C57BL , Microvessels/anatomy & histology , Microvessels/metabolism , Rats , Rats, Sprague-Dawley
7.
BMC Bioinformatics ; 11: 513, 2010 Oct 13.
Article in English | MEDLINE | ID: mdl-20942966

ABSTRACT

BACKGROUND: Data integration is an escalating problem in bioinformatics. We have developed a web tool and warehousing system, Booly, that features a simple yet flexible data model coupled with the ability to perform powerful comparative analysis, including the use of Boolean logic to merge datasets together, and an integrated aliasing system to decipher differing names of the same gene or protein. Furthermore, Booly features a collaborative sharing system and a public repository so that users can retrieve new datasets while contributors can easily disseminate new content. RESULTS: We illustrate the uses of Booly with several examples including: the versatile creation of homebrew datasets, the integration of heterogeneous data to identify genes useful for comparing avian and mammalian brain architecture, and generation of a list of Food and Drug Administration (FDA) approved drugs with possible alternative disease targets. CONCLUSIONS: The Booly paradigm for data storage and analysis should facilitate integration between disparate biological and medical fields and result in novel discoveries that can then be validated experimentally. Booly can be accessed at http://booly.ucsd.edu.


Subject(s)
Computational Biology/methods , Software , Databases, Factual , Databases, Genetic , Drug Discovery , Gene Expression Profiling/methods , Information Storage and Retrieval
8.
PLoS Comput Biol ; 5(3): e1000334, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19325892

ABSTRACT

In this era of complete genomes, our knowledge of neuroanatomical circuitry remains surprisingly sparse. Such knowledge is critical, however, for both basic and clinical research into brain function. Here we advocate for a concerted effort to fill this gap, through systematic, experimental mapping of neural circuits at a mesoscopic scale of resolution suitable for comprehensive, brainwide coverage, using injections of tracers or viral vectors. We detail the scientific and medical rationale and briefly review existing knowledge and experimental techniques. We define a set of desiderata, including brainwide coverage; validated and extensible experimental techniques suitable for standardization and automation; centralized, open-access data repository; compatibility with existing resources; and tractability with current informatics technology. We discuss a hypothetical but tractable plan for mouse, additional efforts for the macaque, and technique development for human. We estimate that the mouse connectivity project could be completed within five years with a comparatively modest budget.


Subject(s)
Brain/anatomy & histology , Brain/physiology , Databases, Factual , Models, Neurological , Nerve Net/anatomy & histology , Nerve Net/physiology , Neuroanatomy/methods , Research Design , Animals , Humans , Macaca , Mice
9.
J Comp Neurol ; 528(4): 597-623, 2020 03 01.
Article in English | MEDLINE | ID: mdl-31531866

ABSTRACT

The sensory-motor division of the avian arcopallium receives parallel inputs from primary and high-order pallial areas of sensory and vocal control pathways, and sends a prominent descending projection to ascending and premotor, subpallial stages of these pathways. While this organization is well established for the auditory and trigeminal systems, the arcopallial subdivision related to the tectofugal visual system and its descending projection to the optic tectum (TeO) has been less investigated. In this study, we charted the arcopallial area displaying tectofugal visual responses and by injecting neural tracers, we traced its connectional anatomy. We found visual motion-sensitive responses in a central region of the dorsal (AD) and intermediate (AI) arcopallium, in between previously described auditory and trigeminal zones. Blocking the ascending tectofugal sensory output, canceled these visual responses in the arcopallium, verifying their tectofugal origin. Injecting PHA-L into the visual, but not into the auditory AI, revealed a massive projection to tectal layer 13 and other tectal related areas, sparing auditory, and trigeminal ones. Conversely, CTB injections restricted to TeO retrogradely labeled neurons confined to the visual AI. These results show that the AI zone receiving tectofugal inputs sends top-down modulations specifically directed to tectal targets, just like the auditory and trigeminal AI zones project back to their respective subpallial sensory and premotor areas, as found by previous studies. Therefore, the arcopallium seems to be organized in a parallel fashion, such that in spite of expected cross-modal integration, the different sensory-motor loops run through separate subdivisions of this structure.


Subject(s)
Columbidae/physiology , Photic Stimulation/methods , Sensorimotor Cortex/physiology , Visual Pathways/physiology , Animals , Columbidae/anatomy & histology , Female , Male , Sensorimotor Cortex/anatomy & histology , Sensorimotor Cortex/chemistry , Visual Pathways/anatomy & histology , Visual Pathways/chemistry
10.
Neuron ; 104(4): 765-780.e3, 2019 11 20.
Article in English | MEDLINE | ID: mdl-31587918

ABSTRACT

How do neurons in orofacial motor cortex (MCtx) orchestrate behaviors? We show that focal activation of MCtx corticobulbar neurons evokes behaviorally relevant concurrent movements of the forelimb, jaw, nose, and vibrissae. The projections from different locations in MCtx form gradients of boutons across premotor nuclei spinal trigeminal pars oralis (SpVO) and interpolaris rostralis (SpVIr). Furthermore, retrograde viral tracing from muscles that control orofacial actions shows that these premotor nuclei segregate their outputs. In the most dramatic case, both SpVO and SpVIr are premotor to forelimb and vibrissa muscles, while only SpVO is premotor to jaw muscles. Functional confirmation of the superimposed control by MCtx was obtained through selective optogenetic activation of corticobulbar neurons on the basis of their preferential projections to SpVO versus SpVIr. We conclude that neighboring projection neurons in orofacial MCtx form parallel pathways to distinct pools of trigeminal premotor neurons that coordinate motor actions into a behavior.


Subject(s)
Efferent Pathways/physiology , Motor Cortex/physiology , Movement/physiology , Neurons/physiology , Trigeminal Nuclei/physiology , Animals , Behavior, Animal/physiology , Face/innervation , Female , Mice , Motor Activity/physiology
12.
Neuroscience ; 368: 152-170, 2018 Jan 01.
Article in English | MEDLINE | ID: mdl-28843993

ABSTRACT

The world view of rodents is largely determined by sensation on two length scales. One is within the animal's peri-personal space; sensorimotor control on this scale involves active movements of the nose, tongue, head, and vibrissa, along with sniffing to determine olfactory clues. The second scale involves the detection of more distant space through vision and audition; these detection processes also impact repositioning of the head, eyes, and ears. Here we focus on orofacial motor actions, primarily vibrissa-based touch but including nose twitching, head bobbing, and licking, that control sensation at short, peri-personal distances. The orofacial nuclei for control of the motor plants, as well as primary and secondary sensory nuclei associated with these motor actions, lie within the hindbrain. The current data support three themes: First, the position of the sensors is determined by the summation of two drive signals, i.e., a fast rhythmic component and an evolving orienting component. Second, the rhythmic component is coordinated across all orofacial motor actions and is phase-locked to sniffing as the animal explores. Reverse engineering reveals that the preBötzinger inspiratory complex provides the reset to the relevant premotor oscillators. Third, direct feedback from somatosensory trigeminal nuclei can rapidly alter motion of the sensors. This feedback is disynaptic and can be tuned by high-level inputs. A holistic model for the coordination of orofacial motor actions into behaviors will encompass feedback pathways through the midbrain and forebrain, as well as hindbrain areas.


Subject(s)
Behavior, Animal/physiology , Brain Stem/physiology , Facial Nucleus/physiology , Motor Activity/physiology , Mouth/physiology , Neural Pathways/physiology , Rodentia/physiology , Sensation/physiology , Touch Perception/physiology , Vibrissae/physiology , Animals , Mouth/innervation
13.
J Comp Neurol ; 525(14): 3044-3071, 2017 Oct 01.
Article in English | MEDLINE | ID: mdl-28614906

ABSTRACT

The auditory ascending system contains parallel pathways in vertebrate brains. In chickens (Gallus gallus), three pathways arise from nucleus laminaris (NL), nucleus angularis (NA), and regio intermedius (RI) in the brainstem, innervating three subdivisions of the nucleus mesencephalicus lateralis pars dorsalis (MLd) in the midbrain. The current study reveals the segregation of these pathways in their subsequent projections to the nucleus ovoidalis (Ov) in the thalamus. Based on cytoarchitecture and myelin distribution, we identified seven Ov subregions, including five neuronal clusters within the Ov proper, the nucleus semilunaris parovoidalis (SPO), and the circum-ovoidalis (cOv). Immunocytochemistry further revealed that a ventromedial cluster of the Ov proper (Ovvm) contains unique cell types expressing α8 subunit nicotinic acetylcholine receptor, while SPO and cOv are characterized with expression of calcitonin-gene-related peptide and cholecystokinin. Tract tracing studies demonstrated that Ovvm is a major target of the NL-recipient zone of MLd, while the RI-recipient zone of MLd predominantly projects to a ventrolateral cluster of the Ov proper. Afferent inputs to the remaining regions of the Ov proper mostly arise from the NA-recipient zone of MLd. SPO and cOv receive a projection from the surrounding areas of MLd, named the nucleus intercollicularis. Importantly, the Ov proper, SPO and cOv all project to the Field L2 in the forebrain, the avian auditory cortex. Taken together, these results demonstrate that the avian auditory thalamus is a structurally and functionally heterogeneous structure, implicating an important role in generating novel representations for specific acoustic features.


Subject(s)
Chickens/anatomy & histology , Thalamic Nuclei/anatomy & histology , Animals , Auditory Pathways/anatomy & histology , Auditory Pathways/metabolism , Avian Proteins/metabolism , Calcitonin Gene-Related Peptide/metabolism , Cell Size , Chickens/metabolism , Cholecystokinin/metabolism , Immunohistochemistry , Mesencephalon/anatomy & histology , Mesencephalon/metabolism , Neuroanatomical Tract-Tracing Techniques , Neurons/cytology , Neurons/metabolism , Receptors, Nicotinic/metabolism , Thalamic Nuclei/metabolism
14.
J Comp Neurol ; 494(1): 7-35, 2006 Jan 01.
Article in English | MEDLINE | ID: mdl-16304683

ABSTRACT

The cholinergic division of the avian nucleus isthmi, the homolog of the mammalian nucleus parabigeminalis, is composed of the pars parvocellularis (Ipc) and pars semilunaris (SLu). Ipc and SLu were studied with in vivo and in vitro tracing and intracellular filling methods. 1) Both nuclei have reciprocal homotopic connections with the ipsilateral optic tectum. The SLu connection is more diffuse than that of Ipc. 2) Tectal inputs to Ipc and SLu are Brn3a-immunoreactive neurons in the inner sublayer of layer 10. Tectal neurons projecting on Ipc possess "shepherd's crook" axons and radial dendritic fields in layers 2-13. 3) Neurons in the mid-portion of Ipc possess a columnar spiny dendritic field. SLu neurons have a large, nonoriented spiny dendritic field. 4) Ipc terminals form a cylindrical brush-like arborization (35-50 microm wide) in layers 2-10, with extremely dense boutons in layers 3-6, and a diffuse arborization in layers 11-13. SLu neurons terminate in a wider column (120-180 microm wide) lacking the dust-like boutonal features of Ipc and extend in layers 4c-13 with dense arborizations in layers 4c, 6, and 9-13. 5) Ipc and SLu contain specialized fast potassium ion channels. We propose that dense arborizations of Ipc axons may be directed to the distal dendritic bottlebrushes of motion detecting tectal ganglion cells (TGCs). They may provide synchronous activation of a group of adjacent bottlebrushes of different TGCs of the same type via their intralaminar processes, and cross channel activation of different types of TGCs within the same column of visual space.


Subject(s)
Acetylcholine/metabolism , Neurons/cytology , Superior Colliculi/cytology , Tectum Mesencephali/cytology , Visual Pathways/anatomy & histology , Animals , Animals, Newborn , Biotin/analogs & derivatives , Biotin/metabolism , Brain Mapping , Chickens , Cholera Toxin/metabolism , Choline O-Acetyltransferase/metabolism , Dextrans/metabolism , Diagnostic Imaging/methods , Functional Laterality , Histocytochemistry , Immunohistochemistry/methods , In Vitro Techniques , Models, Anatomic , Models, Neurological , Neurons/metabolism , Paired Box Transcription Factors/metabolism , Phytohemagglutinins/metabolism , Presynaptic Terminals/physiology , Presynaptic Terminals/ultrastructure , Shaw Potassium Channels/metabolism , Superior Colliculi/metabolism , Tectum Mesencephali/anatomy & histology , Transcription Factor Brn-3A/metabolism
15.
Anat Rec A Discov Mol Cell Evol Biol ; 287(1): 1080-102, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16206213

ABSTRACT

Early 20th-century comparative anatomists regarded the avian telencephalon as largely consisting of a hypertrophied basal ganglia, with thalamotelencephalic circuitry thus being taken to be akin to thalamostriatal circuitry in mammals. Although this view has been disproved for more than 40 years, only with the recent replacement of the old telencephalic terminology that perpetuated this view by a new terminology reflecting more accurate understanding of avian brain organization has the modern view of avian forebrain organization begun to become more widely appreciated. The modern view, reviewed in the present article, recognizes that the avian basal ganglia occupies no more of the telencephalon than is typically the case in mammals, and that it plays a role in motor control and motor learning as in mammals. Moreover, the vast majority of the telencephalon in birds is pallial in nature and, as true of cerebral cortex in mammals, provides the substrate for the substantial perceptual and cognitive abilities evident among birds. While the evolutionary relationship of the pallium of the avian telencephalon and its thalamic input to mammalian cerebral cortex and its thalamic input remains a topic of intense interest, the evidence currently favors the view that they had a common origin from forerunners in the stem amniotes ancestral to birds and mammals.


Subject(s)
Biological Evolution , Columbidae/anatomy & histology , Prosencephalon/anatomy & histology , Animals , Auditory Pathways/anatomy & histology , Auditory Pathways/physiology , Columbidae/physiology , Neural Pathways/anatomy & histology , Neural Pathways/physiology , Prosencephalon/physiology , Rats , Telencephalon/anatomy & histology , Telencephalon/physiology , Visual Pathways/anatomy & histology , Vocalization, Animal/physiology
16.
Philos Trans R Soc Lond B Biol Sci ; 370(1684)2015 Dec 19.
Article in English | MEDLINE | ID: mdl-26554047

ABSTRACT

The organization of the non-mammalian forebrain had long puzzled neurobiologists. Unlike typical mammalian brains, the telencephalon is not organized in a laminated 'cortical' manner, with distinct cortical areas dedicated to individual sensory modalities or motor functions. The two major regions of the telencephalon, the basal ventricular ridge (BVR) and the dorsal ventricular ridge (DVR), were loosely referred to as being akin to the mammalian basal ganglia. The telencephalon of non-mammalian vertebrates appears to consist of multiple 'subcortical' groups of cells. Analysis of the nuclear organization of the avian brain, its connections, molecular properties and physiology, and organization of its pattern of circuitry and function relative to that of mammals, collectively referred to as 'evolutionary connectomics', revealed that only a restricted portion of the BVR is homologous to the basal ganglia of mammals. The remaining dorsal regions of the DVR, wulst and arcopallium of the avian brain contain telencephalic inputs and outputs remarkably similar to those of the individual layers of the mammalian 'neocortex', hippocampus and amygdala, with instances of internuclear connections strikingly similar to those found between cortical layers and within radial 'columns' in the mammalian sensory and motor cortices. The molecular properties of these 'nuclei' in birds and reptiles are similar to those of the corresponding layers of the mammalian neocortex. The fundamental pathways and cell groups of the auditory, visual and somatosensory systems of the thalamus and telencephalon are homologous at the cellular, circuit, network and gene levels, and are of great antiquity. A proposed altered migration of these homologous neurons and circuits during development is offered as a mechanism that may account for the altered configuration of mammalian telencephalae.


Subject(s)
Biological Evolution , Neocortex/anatomy & histology , Vertebrates/anatomy & histology , Vertebrates/genetics , Animals
17.
J Comp Neurol ; 523(6): 921-42, 2015 Apr 15.
Article in English | MEDLINE | ID: mdl-25503925

ABSTRACT

Sensorimotor processing relies on hierarchical neuronal circuits to mediate sensory-driven behaviors. In the mouse vibrissa system, trigeminal brainstem circuits are thought to mediate the first stage of vibrissa scanning control via sensory feedback that provides reflexive protraction in response to stimulation. However, these circuits are not well defined. Here we describe a complete disynaptic sensory receptor-to-muscle circuit for positive feedback in vibrissa movement. We identified a novel region of trigeminal brainstem, spinal trigeminal nucleus pars muralis, which contains a class of vGluT2+ excitatory projection neurons involved in vibrissa motor control. Complementary single- and dual-labeling with traditional and virus tracers demonstrate that these neurons both receive primary inputs from vibrissa sensory afferent fibers and send monosynaptic connections to facial nucleus motoneurons that directly innervate vibrissa musculature. These anatomical results suggest a general role of disynaptic architecture in fast positive feedback for motor output that drives active sensation.


Subject(s)
Afferent Pathways/physiology , Brain Stem/cytology , Feedback, Sensory/physiology , Neurons/physiology , Synapses/physiology , Vibrissae/innervation , Animals , Brain Stem/physiology , Cholera Toxin/metabolism , Choline O-Acetyltransferase/genetics , Choline O-Acetyltransferase/metabolism , Glutamate Decarboxylase/genetics , Glutamate Decarboxylase/metabolism , Glycine Plasma Membrane Transport Proteins/genetics , Glycine Plasma Membrane Transport Proteins/metabolism , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Male , Mice , Mice, Inbred C57BL , Mice, Transgenic , Reflex/physiology , Spinal Cord/cytology , Spinal Cord/physiology , Vagus Nerve/physiology , Vesicular Glutamate Transport Protein 2/genetics , Vesicular Glutamate Transport Protein 2/metabolism , Vesicular Inhibitory Amino Acid Transport Proteins/genetics , Vesicular Inhibitory Amino Acid Transport Proteins/metabolism , Vibrissae/metabolism
18.
J Comp Neurol ; 469(2): 275-97, 2004 Feb 02.
Article in English | MEDLINE | ID: mdl-14694539

ABSTRACT

The nucleus isthmi pars magnocellularis (Imc) and pars parvocellularis (Ipc) influence the receptive field structure of neurons in the optic tectum (TeO). To understand better the anatomical substrate of isthmotectal interactions, neuronal morphology and connections of Imc were examined in chicks (Gallus gallus). Cholera toxin B injection into TeO demonstrated a coarse topographical projection from TeO upon Imc. Retrogradely labeled neurons were scattered throughout Imc and in low density within the zone of anterogradely labeled terminals, suggesting a heterotopic projection from Imc upon TeO. This organization differed from the precise homotopic reciprocal connections of Ipc and the nucleus isthmi pars semilunaris (SLu) with TeO. By using slice preparations, extracellular biotinylated dextran amine injections demonstrated a dense projection from most neurons in Imc upon both Ipc and SLu. Intracellular filling of Imc neurons with biocytin revealed two cell types. The most common, Imc-Is, formed a widely ramifying axonal field in both Ipc and SLu, without obvious topography. A less frequently observed cell type, Imc-Te, formed a widely ramifying terminal field in layers 10-12 of TeO. No neurons were found to project upon both Ipc/SLu and TeO. Both types possessed local axon collaterals and flat dendritic fields oriented parallel to the long axis of Imc. Imc neurons contain glutamic acid decarboxylase, which is consistent with Imc participating in center-surround or other wide-field inhibitory isthmotectal interactions. The laminar and columnar pattern of isthmotectal terminals also suggests a means of interacting with multiple tectofugal pathways, including the stratified subpopulations of tectorotundal neurons participating in motion detection.


Subject(s)
Biotin/analogs & derivatives , Chickens/anatomy & histology , Lysine/analogs & derivatives , Mesencephalon/cytology , Neural Pathways/cytology , Neurons/cytology , Superior Colliculi/cytology , Animals , Axons/physiology , Axons/ultrastructure , Chickens/physiology , Cholera Toxin , Dendrites/physiology , Dendrites/ultrastructure , Dextrans , Glutamate Decarboxylase/metabolism , Immunohistochemistry , Mesencephalon/physiology , Motion Perception/physiology , Neural Inhibition/physiology , Neural Pathways/physiology , Neurons/physiology , Superior Colliculi/physiology , Synaptic Transmission/physiology , gamma-Aminobutyric Acid/metabolism
19.
J Comp Neurol ; 463(3): 317-40, 2003 Aug 25.
Article in English | MEDLINE | ID: mdl-12820165

ABSTRACT

The retinofugal pathways in the California ground squirrel, Spermophilus beecheyi, were mapped after intravitreal injections of cholera toxin B-subunit. The results of the current study are consistent with work in other mammals and provide new details relevant to the organization and evolution of the visual system. All retinorecipient nuclei received bilateral input, with a contralateral predominance. The suprachiasmatic nucleus is heavily innervated, and sparse terminals were noted in other hypothalamic areas. In addition to the interstitial, medial, lateral, and dorsal terminal nuclei, a few fibers of the accessory optic tract may enter the ventral lateral geniculate and the nucleus of the optic tract, though this innervation may not derive from the same ganglion cells innervating the accessory optic nuclei. Retinal terminals are found in the intergeniculate leaflet and the "dorsal cap" of the ventral lateral geniculate. Retinal fibers pass rostrally from the dorsal cap toward the anterodorsal thalamus, confirming a projection described in the tree shrew and monkeys. Retinal termination patterns in the dorsal lateral geniculate reveal a hexilaminate organization of alternating ipsilateral and contralateral input. Variations in terminal morphology suggest that sublayers receive input from distinct ganglion cell types and that laminar comparisons can be made with primates. Finally, terminal patterns in the superior colliculus reveal a dense, highly ordered columnar organization supporting functional properties of tectal receptive fields. All the visual structures in the ground squirrel are large and well differentiated, making the sciurid visual system an accessible rodent model for comparing visual processing with that in other diurnal vertebrates.


Subject(s)
Retina/cytology , Sciuridae/anatomy & histology , Visual Pathways/anatomy & histology , Animals , Cholera Toxin , Female , Geniculate Bodies/anatomy & histology , Male , Superior Colliculi/anatomy & histology , Suprachiasmatic Nucleus/anatomy & histology
20.
J Comp Neurol ; 522(10): 2377-96, 2014 Jul 01.
Article in English | MEDLINE | ID: mdl-24435811

ABSTRACT

The nucleus geniculatus lateralis pars ventralis (GLv) is a prominent retinal target in all amniotes. In birds, it is in receipt of a dense and topographically organized retinal projection. The GLv is also the target of substantial and topographically organized projections from the optic tectum and the visual wulst (hyperpallium). Tectal and retinal afferents terminate homotopically within the external GLv-neuropil. Efferents from the GLv follow a descending course through the tegmentum and can be traced into the medial pontine nucleus. At present, the cells of origin of the Tecto-GLv projection are only partially described. Here we characterized the laminar location, morphology, projection pattern, and neurochemical identity of these cells by means of neural tracer injections and intracellular fillings in slice preparations and extracellular tracer injections in vivo. The Tecto-GLv projection arises from a distinct subset of layer 10 bipolar neurons, whose apical dendrites show a complex transverse arborization at the level of layer 7. Axons of these bipolar cells arise from the apical dendrites and follow a course through the optic tract to finally form very fine and restricted terminal endings inside the GLv-neuropil. Double-label experiments showed that these bipolar cells were choline acetyltransferase (ChAT)-immunoreactive. Our results strongly suggest that Tecto-GLv neurons form a pathway by which integrated tectal activity rapidly feeds back to the GLv and exerts a focal cholinergic modulation of incoming retinal inputs.


Subject(s)
Brain/cytology , Chickens/anatomy & histology , Columbidae/anatomy & histology , Neurons/cytology , Visual Pathways/cytology , Animals , Axons/metabolism , Brain/metabolism , Chickens/metabolism , Choline O-Acetyltransferase/metabolism , Columbidae/metabolism , Dendrites/metabolism , Geniculate Bodies/cytology , Geniculate Bodies/metabolism , Immunohistochemistry , Neuroanatomical Tract-Tracing Techniques , Neurons/metabolism , Superior Colliculi/cytology , Superior Colliculi/metabolism , Tissue Culture Techniques , Visual Pathways/metabolism
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