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1.
J Behav Med ; 42(3): 522-533, 2019 06.
Article in English | MEDLINE | ID: mdl-30467656

ABSTRACT

Behavioral activation is an empirically supported treatment for depression, but much is unknown about factors associated with treatment response. The present study aimed to determine whether baseline levels and subsequent changes in psychosocial factors were associated with improvement in depression in women with comorbid obesity who received behavioral activation treatment for depression and a lifestyle intervention. Multilevel modeling was used to estimate the associations between psychosocial factors and change in depression scores during the first 10 weeks of treatment and associations between changes in psychosocial factors from baseline to 6-month follow-up and change in depression over the same time period. No baseline psychosocial factors were associated with depression improvement during treatment (p = 0.110-0.613). However, greater improvement in hedonic capacity (p = 0.001), environmental reward (p = 0.004), and social impairment (p = 0.012) were associated with greater reductions in depression over 6 months. Findings highlight the differential relationship specific psychosocial factors have with depression treatment outcomes.


Subject(s)
Behavior Therapy/methods , Depressive Disorder, Major/psychology , Life Style , Obesity/therapy , Social Support , Adaptation, Psychological , Adult , Comorbidity , Depressive Disorder, Major/epidemiology , Depressive Disorder, Major/therapy , Female , Humans , Male , Obesity/epidemiology , Obesity/psychology , Reward , Treatment Outcome
2.
Genes Dev ; 23(9): 1119-30, 2009 May 01.
Article in English | MEDLINE | ID: mdl-19417106

ABSTRACT

It is impossible to predict which pathway, direct glutaminylation of tRNA(Gln) or tRNA-dependent transamidation of glutamyl-tRNA(Gln), generates mitochondrial glutaminyl-tRNA(Gln) for protein synthesis in a given species. The report that yeast mitochondria import both cytosolic glutaminyl-tRNA synthetase and tRNA(Gln) has challenged the widespread use of the transamidation pathway in organelles. Here we demonstrate that yeast mitochondrial glutaminyl-tRNA(Gln) is in fact generated by a transamidation pathway involving a novel type of trimeric tRNA-dependent amidotransferase (AdT). More surprising is the fact that cytosolic glutamyl-tRNA synthetase ((c)ERS) is imported into mitochondria, where it constitutes the mitochondrial nondiscriminating ERS that generates the mitochondrial mischarged glutamyl-tRNA(Gln) substrate for the AdT. We show that dual localization of (c)ERS is controlled by binding to Arc1p, a tRNA nuclear export cofactor that behaves as a cytosolic anchoring platform for (c)ERS. Expression of Arc1p is down-regulated when yeast cells are switched from fermentation to respiratory metabolism, thus allowing increased import of (c)ERS to satisfy a higher demand of mitochondrial glutaminyl-tRNA(Gln) for mitochondrial protein synthesis. This novel strategy that enables a single protein to be localized in both the cytosol and mitochondria provides a new paradigm for regulation of the dynamic subcellular distribution of proteins between membrane-separated compartments.


Subject(s)
Glutamate-tRNA Ligase/metabolism , Mitochondria/enzymology , RNA, Transfer, Amino Acyl/metabolism , RNA-Binding Proteins/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/metabolism , Transferases/metabolism , Cytoplasm/enzymology , Gene Expression Regulation, Fungal , Glutamic Acid/metabolism , Protein Binding , Protein Transport
3.
J Biol Chem ; 288(6): 3816-22, 2013 Feb 08.
Article in English | MEDLINE | ID: mdl-23258533

ABSTRACT

Many bacteria lack genes encoding asparaginyl- and/or glutaminyl-tRNA synthetase and consequently rely on an indirect path for the synthesis of both Asn-tRNA(Asn) and Gln-tRNA(Gln). In some bacteria such as Thermus thermophilus, efficient delivery of misacylated tRNA to the downstream amidotransferase (AdT) is ensured by formation of a stable, tRNA-dependent macromolecular complex called the Asn-transamidosome. This complex enables direct delivery of Asp-tRNA(Asn) from the non-discriminating aspartyl-tRNA synthetase to AdT, where it is converted into Asn-tRNA(Asn). Previous characterization of the analogous Helicobacter pylori Asn-transamidosome revealed that it is dynamic and cannot be stably isolated, suggesting the possibility of an alternative mechanism to facilitate assembly of a stable complex. We have identified a novel protein partner called Hp0100 as a component of a stable, tRNA-independent H. pylori Asn-transamidosome; this complex contains a non-discriminating aspartyl-tRNA synthetase, AdT, and Hp0100 but does not require tRNA(Asn) for assembly. Hp0100 also enhances the capacity of AdT to convert Asp-tRNA(Asn) into Asn-tRNA(Asn) by ∼35-fold. Our results demonstrate that bacteria have adopted multiple divergent methods for transamidosome assembly and function.


Subject(s)
Amidinotransferases/metabolism , Bacterial Proteins/metabolism , Helicobacter pylori/enzymology , Multienzyme Complexes/metabolism , RNA, Bacterial/metabolism , RNA, Transfer, Amino Acyl/metabolism , Amidinotransferases/genetics , Bacterial Proteins/genetics , Helicobacter pylori/genetics , Multienzyme Complexes/genetics , RNA, Bacterial/genetics , RNA, Transfer, Amino Acyl/genetics
4.
EMBO J ; 29(18): 3118-29, 2010 Sep 15.
Article in English | MEDLINE | ID: mdl-20717102

ABSTRACT

Four out of the 22 aminoacyl-tRNAs (aa-tRNAs) are systematically or alternatively synthesized by an indirect, two-step route requiring an initial mischarging of the tRNA followed by tRNA-dependent conversion of the non-cognate amino acid. During tRNA-dependent asparagine formation, tRNA(Asn) promotes assembly of a ribonucleoprotein particle called transamidosome that allows channelling of the aa-tRNA from non-discriminating aspartyl-tRNA synthetase active site to the GatCAB amidotransferase site. The crystal structure of the Thermus thermophilus transamidosome determined at 3 A resolution reveals a particle formed by two GatCABs, two dimeric ND-AspRSs and four tRNAs(Asn) molecules. In the complex, only two tRNAs are bound in a functional state, whereas the two other ones act as an RNA scaffold enabling release of the asparaginyl-tRNA(Asn) without dissociation of the complex. We propose that the crystal structure represents a transient state of the transamidation reaction. The transamidosome constitutes a transfer-ribonucleoprotein particle in which tRNAs serve the function of both substrate and structural foundation for a large molecular machine.


Subject(s)
Asparagine/biosynthesis , RNA, Transfer, Asn/metabolism , Ribonucleoproteins/chemistry , Crystallization , Nitrogenous Group Transferases/metabolism , Protein Conformation , Ribonucleoproteins/isolation & purification , Ribonucleoproteins/metabolism , Thermus thermophilus/metabolism , Transfer RNA Aminoacylation
5.
Nucleic Acids Res ; 40(11): 4965-76, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22362756

ABSTRACT

Helicobacter pylori catalyzes Asn-tRNA(Asn) formation by use of the indirect pathway that involves charging of Asp onto tRNA(Asn) by a non-discriminating aspartyl-tRNA synthetase (ND-AspRS), followed by conversion of the mischarged Asp into Asn by the GatCAB amidotransferase. We show that the partners of asparaginylation assemble into a dynamic Asn-transamidosome, which uses a different strategy than the Gln-transamidosome to prevent the release of the mischarged aminoacyl-tRNA intermediate. The complex is described by gel-filtration, dynamic light scattering and kinetic measurements. Two strategies for asparaginylation are shown: (i) tRNA(Asn) binds GatCAB first, allowing aminoacylation and immediate transamidation once ND-AspRS joins the complex; (ii) tRNA(Asn) is bound by ND-AspRS which releases the Asp-tRNA(Asn) product much slower than the cognate Asp-tRNA(Asp); this kinetic peculiarity allows GatCAB to bind and transamidate Asp-tRNA(Asn) before its release by the ND-AspRS. These results are discussed in the context of the interrelation between the Asn and Gln-transamidosomes which use the same GatCAB in H. pylori, and shed light on a kinetic mechanism that ensures faithful codon reassignment for Asn.


Subject(s)
Aspartate-tRNA Ligase/metabolism , Helicobacter pylori/enzymology , Nitrogenous Group Transferases/metabolism , RNA, Transfer, Asn/metabolism , Transfer RNA Aminoacylation , Asparagine/metabolism , Aspartic Acid/metabolism , Genetic Code , Kinetics , RNA, Transfer, Asp/metabolism
6.
Nucleic Acids Res ; 39(21): 9306-15, 2011 Nov.
Article in English | MEDLINE | ID: mdl-21813455

ABSTRACT

In many bacteria and archaea, an ancestral pathway is used where asparagine and glutamine are formed from their acidic precursors while covalently linked to tRNA(Asn) and tRNA(Gln), respectively. Stable complexes formed by the enzymes of these indirect tRNA aminoacylation pathways are found in several thermophilic organisms, and are called transamidosomes. We describe here a transamidosome forming Gln-tRNA(Gln) in Helicobacter pylori, an ε-proteobacterium pathogenic for humans; this transamidosome displays novel properties that may be characteristic of mesophilic organisms. This ternary complex containing the non-canonical GluRS2 specific for Glu-tRNA(Gln) formation, the tRNA-dependent amidotransferase GatCAB and tRNA(Gln) was characterized by dynamic light scattering. Moreover, we observed by interferometry a weak interaction between GluRS2 and GatCAB (K(D) = 40 ± 5 µM). The kinetics of Glu-tRNA(Gln) and Gln-tRNA(Gln) formation indicate that conformational shifts inside the transamidosome allow the tRNA(Gln) acceptor stem to interact alternately with GluRS2 and GatCAB despite their common identity elements. The integrity of this dynamic transamidosome depends on a critical concentration of tRNA(Gln), above which it dissociates into separate GatCAB/tRNA(Gln) and GluRS2/tRNA(Gln) complexes. Ester bond protection assays show that both enzymes display a good affinity for tRNA(Gln) regardless of its aminoacylation state, and support a mechanism where GluRS2 can hydrolyze excess Glu-tRNA(Gln), ensuring faithful decoding of Gln codons.


Subject(s)
Glutamate-tRNA Ligase/metabolism , Helicobacter pylori/enzymology , Nitrogenous Group Transferases/metabolism , RNA, Transfer, Amino Acyl/metabolism , RNA, Transfer, Gln/metabolism , Helicobacter pylori/genetics , Hydrolysis , Interferometry , Kinetics , Models, Biological , RNA Stability
7.
Arch Clin Neuropsychol ; 38(4): 513-524, 2023 May 22.
Article in English | MEDLINE | ID: mdl-36085576

ABSTRACT

OBJECTIVE: Few studies have examined the use of embedded validity indicators (EVIs) in criminal-forensic practice settings, where judgements regarding performance validity can carry severe consequences for the individual and society. This study sought to examine how various EVIs perform in criminal defendant populations, and determine relationships between EVI scores and intrapersonal variables thought to influence performance validity. METHOD: Performance on 16 empirically established EVI cutoffs were examined in a sample of 164 criminal defendants with valid performance who were referred for forensic neuropsychological evaluation. Subsequent analyses examined the relationship between EVI scores and intrapersonal variables in 83 of these defendants. RESULTS: Half of the EVIs (within the Wechsler Adult Intelligence Scale Digit Span Total, Conners' Continuous Performance Test Commissions, Wechsler Memory Scale Logical Memory I and II, Controlled Oral Word Association Test, Trail Making Test Part B, and Stroop Word and Color) performed as intended in this sample. The EVIs that did not perform as intended were significantly influenced by relevant intrapersonal variables, including below-average intellectual functioning and history of moderate-severe traumatic brain injury and neurodevelopmental disorder. CONCLUSIONS: This study identifies multiple EVIs appropriate for use in criminal-forensic settings. However, based on these findings, practitioners may wish to be selective in choosing and interpreting EVIs for forensic evaluations of criminal court defendants.


Subject(s)
Brain Injuries, Traumatic , Criminals , Adult , Humans , Neuropsychological Tests , Cognition , Brain Injuries, Traumatic/psychology , Trail Making Test , Reproducibility of Results
8.
Proc Natl Acad Sci U S A ; 105(17): 6481-5, 2008 Apr 29.
Article in English | MEDLINE | ID: mdl-18441100

ABSTRACT

Aminoacyl-tRNAs are generally formed by direct attachment of an amino acid to tRNAs by aminoacyl-tRNA synthetases, but Gln-tRNA is an exception to this rule. Gln-tRNA(Gln) is formed by this direct pathway in the eukaryotic cytosol and in protists or fungi mitochondria but is formed by an indirect transamidation pathway in most of bacteria, archaea, and chloroplasts. We show here that the formation of Gln-tRNA(Gln) is also achieved by the indirect pathway in plant mitochondria. The mitochondrial-encoded tRNA(Gln), which is the only tRNA(Gln) present in mitochondria, is first charged with glutamate by a nondiscriminating GluRS, then is converted into Gln-tRNA(Gln) by a tRNA-dependent amidotransferase (AdT). The three subunits GatA, GatB, and GatC are imported into mitochondria and assemble into a functional GatCAB AdT. Moreover, the mitochondrial pathway of Gln-tRNA(Gln) formation is shared with chloroplasts as both the GluRS, and the three AdT subunits are dual-imported into mitochondria and chloroplasts.


Subject(s)
Arabidopsis/enzymology , Chloroplasts/enzymology , Glutamine/biosynthesis , Mitochondria/enzymology , Nitrogenous Group Transferases/metabolism , RNA, Transfer, Amino Acyl/biosynthesis , Solanum tuberosum/enzymology , Cell Extracts , Cytosol/enzymology , Glutamate-tRNA Ligase/metabolism , Protein Subunits/metabolism , Protein Transport
9.
Article in English | MEDLINE | ID: mdl-19478435

ABSTRACT

Thermus thermophilus deprived of asparagine synthetase synthesizes Asn on tRNA(Asn) via a tRNA-dependent pathway involving a nondiscriminating aspartyl-tRNA synthetase that charges Asp onto tRNA(Asn) prior to conversion of the Asp to Asn by GatCAB, a tRNA-dependent amidotransferase. This pathway also constitutes the route of Asn-tRNA(Asn) formation by bacteria and archaea deprived of asparaginyl-tRNA synthetase. The partners involved in tRNA-dependent Asn formation in T. thermophilus assemble into a ternary complex called the transamidosome. This particule produces Asn-tRNA(Asn) in the presence of free Asp, ATP and an amido-group donor. Crystals of the transamidosome from T. thermophilus were obtained in the presence of PEG 4000 in MES-NaOH buffer pH 6.5. They belonged to the primitive monoclinic space group P2(1), with unit-cell parameters a = 115.9, b = 214.0, c = 127.8 A, beta = 93.3 degrees . A complete data set was collected to 3 A resolution. Here, the isolation and crystallization of the transamidosome from T. thermophilus and preliminary crystallographic data are reported.


Subject(s)
Asparagine/biosynthesis , Aspartate-tRNA Ligase/chemistry , Aspartate-tRNA Ligase/metabolism , RNA, Transfer, Asn/biosynthesis , Ribonucleoproteins/isolation & purification , Ribonucleoproteins/metabolism , Aspartate-tRNA Ligase/genetics , Crystallization , Data Collection , Escherichia coli/genetics , Light , RNA, Transfer, Amino Acyl/genetics , RNA, Transfer, Amino Acyl/metabolism , Scattering, Radiation , Statistics as Topic , Thermus thermophilus/genetics , Thermus thermophilus/metabolism , Transfer RNA Aminoacylation , X-Ray Diffraction
10.
Nucleic Acids Res ; 35(10): 3420-30, 2007.
Article in English | MEDLINE | ID: mdl-17478519

ABSTRACT

In most prokaryotes Asn-tRNA(Asn) and Gln-tRNA(Gln) are formed by amidation of aspartate and glutamate mischarged onto tRNA(Asn) and tRNA(Gln), respectively. Coexistence in the organism of mischarged Asp-tRNA(Asn) and Glu-tRNA(Gln) and the homologous Asn-tRNA(Asn) and Gln-tRNA(Gln) does not, however, lead to erroneous incorporation of Asp and Glu into proteins, since EF-Tu discriminates the misacylated tRNAs from the correctly charged ones. This property contrasts with the canonical function of EF-Tu, which is to non-specifically bind the homologous aa-tRNAs, as well as heterologous species formed in vitro by aminoacylation of non-cognate tRNAs. In Thermus thermophilus that forms the Asp-tRNA(Asn) intermediate by the indirect pathway of tRNA asparaginylation, EF-Tu must discriminate the mischarged aminoacyl-tRNAs (aa-tRNA). We show that two base pairs in the tRNA T-arm and a single residue in the amino acid binding pocket of EF-Tu promote discrimination of Asp-tRNA(Asn) from Asn-tRNA(Asn) and Asp-tRNA(Asp) by the protein. Our analysis suggests that these structural elements might also contribute to rejection of other mischarged aa-tRNAs formed in vivo that are not involved in peptide elongation. Additionally, these structural features might be involved in maintaining a delicate balance of weak and strong binding affinities between EF-Tu and the amino acid and tRNA moieties of other elongator aa-tRNAs.


Subject(s)
Codon , Peptide Elongation Factor Tu/chemistry , RNA, Transfer, Amino Acyl/chemistry , RNA, Transfer, Asn/chemistry , Transfer RNA Aminoacylation , Base Pairing , Escherichia coli Proteins/metabolism , Models, Molecular , Peptide Elongation Factor Tu/metabolism , Protein Binding , RNA, Transfer, Amino Acyl/metabolism , RNA, Transfer, Asn/metabolism , RNA, Transfer, Asp/chemistry , RNA, Transfer, Asp/metabolism , Thermus thermophilus/genetics
11.
Nucleic Acids Res ; 35(5): 1421-31, 2007.
Article in English | MEDLINE | ID: mdl-17284460

ABSTRACT

Glutaminyl-tRNA synthetase from Deinococcus radiodurans possesses a C-terminal extension of 215 residues appending the anticodon-binding domain. This domain constitutes a paralog of the Yqey protein present in various organisms and part of it is present in the C-terminal end of the GatB subunit of GatCAB, a partner of the indirect pathway of Gln-tRNA(Gln) formation. To analyze the peculiarities of the structure-function relationship of this GlnRS related to the Yqey domain, a structure of the protein was solved from crystals diffracting at 2.3 A and a docking model of the synthetase complexed to tRNA(Gln) constructed. The comparison of the modeled complex with the structure of the E. coli complex reveals that all residues of E. coli GlnRS contacting tRNA(Gln) are conserved in D. radiodurans GlnRS, leaving the functional role of the Yqey domain puzzling. Kinetic investigations and tRNA-binding experiments of full length and Yqey-truncated GlnRSs reveal that the Yqey domain is involved in tRNA(Gln) recognition. They demonstrate that Yqey plays the role of an affinity-enhancer of GlnRS for tRNA(Gln) acting only in cis. However, the presence of Yqey in free state in organisms lacking GlnRS, suggests that this domain may exert additional cellular functions.


Subject(s)
Amino Acyl-tRNA Synthetases/chemistry , Bacterial Proteins/chemistry , Deinococcus/enzymology , RNA, Transfer, Gln/chemistry , Amino Acid Sequence , Amino Acyl-tRNA Synthetases/genetics , Amino Acyl-tRNA Synthetases/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Crystallography, X-Ray , Escherichia coli/enzymology , Evolution, Molecular , Gene Fusion , Kinetics , Models, Molecular , Molecular Sequence Data , Nitrogenous Group Transferases/chemistry , Protein Structure, Tertiary , RNA, Transfer, Gln/metabolism , Sequence Alignment
12.
J Physician Assist Educ ; 30(4): 223-227, 2019 Dec.
Article in English | MEDLINE | ID: mdl-31664007

ABSTRACT

PURPOSE: To examine how the implementation of a year-long interprofessional clinical case course for pharmacy and physician assistant (PA) students affects student self-reported interprofessional collaboration-related competencies in 6 skill areas (communication, collaboration, roles and responsibilities, collaborative patient/family-centered approach, conflict management/resolution, and team functioning) and whether outcomes differed between the 2 professions. METHODS: Pharmacy and PA students completed the Interprofessional Collaborative Competency Attainment Survey (ICCAS) at the beginning and end of a year-long interprofessional, team-based clinical case course. Survey results were compared using a mixed-design analysis of variance model to determine the effect the course had on students' self-reported competencies of interprofessional care and whether the outcomes differed between student groups. RESULTS: One-hundred fifteen students completed both the presurvey and postsurvey. Significant improvement in student self-reported team-based behaviors were noted in 11 of the 20 ICCAS items, and results were similar among student groups. CONCLUSION: This study demonstrates that an interactive, interprofessional clinical case course can positively change student self-reported team-based behaviors.


Subject(s)
Clinical Competence , Education, Pharmacy/methods , Physician Assistants/education , Communication , Curriculum , Educational Measurement , Humans , Interdisciplinary Communication , Physician Assistants/psychology , Professional Role , Students, Health Occupations/psychology , Students, Pharmacy/psychology
13.
Nucleic Acids Res ; 34(21): 6083-94, 2006.
Article in English | MEDLINE | ID: mdl-17074748

ABSTRACT

In many prokaryotes and in organelles asparagine and glutamine are formed by a tRNA-dependent amidotransferase (AdT) that catalyzes amidation of aspartate and glutamate, respectively, mischarged on tRNAAsn and tRNAGln. These pathways supply the deficiency of the organism in asparaginyl- and glutaminyl-tRNA synthtetases and provide the translational machinery with Asn-tRNAAsn and Gln-tRNAGln. So far, nothing is known about the structural elements that confer to tRNA the role of a specific cofactor in the formation of the cognate amino acid. We show herein, using aspartylated tRNAAsn and tRNAAsp variants, that amidation of Asp acylating tRNAAsn is promoted by the base pair U1-A72 whereas the G1-C72 pair and presence of the supernumerary nucleotide U20A in the D-loop of tRNAAsp prevent amidation. We predict, based on comparison of tRNAGln and tRNAGlu sequence alignments from bacteria using the AdT-dependent pathway to form Gln-tRNAGln, that the same combination of nucleotides also rules specific tRNA-dependent formation of Gln. In contrast, we show that the tRNA-dependent conversion of Asp into Asn by archaeal AdT is mainly mediated by nucleotides G46 and U47 of the variable region. In the light of these results we propose that bacterial and archaeal AdTs use kingdom-specific signals to catalyze the tRNA-dependent formations of Asn and Gln.


Subject(s)
Asparagine/biosynthesis , Neisseria meningitidis/enzymology , Nitrogenous Group Transferases/metabolism , RNA, Bacterial/chemistry , RNA, Transfer/chemistry , Adenine/chemistry , Base Sequence , Kinetics , Nitrogenous Group Transferases/chemistry , RNA, Archaeal/chemistry , RNA, Archaeal/metabolism , RNA, Bacterial/metabolism , RNA, Transfer/metabolism , RNA, Transfer, Asn/chemistry , RNA, Transfer, Asn/metabolism , RNA, Transfer, Asp/chemistry , RNA, Transfer, Asp/metabolism , RNA, Transfer, Gln/chemistry , RNA, Transfer, Gln/metabolism , RNA, Transfer, Glu/chemistry , RNA, Transfer, Glu/metabolism , Sequence Alignment , Species Specificity , Substrate Specificity , Uridine/chemistry
14.
Games Health J ; 7(2): 100-106, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29304288

ABSTRACT

OBJECTIVES: Active videogames (AVGs) could provide a novel approach to increasing physical activity and decreasing sedentary activity in children, but little is known about which children are likely to use AVGs. This study examined whether youth demographics, social support, and AVG engagement influence use of AVGs and physical activity. MATERIALS AND METHODS: A diverse sample of youth participants (42.4% non-Hispanic white), aged 8-14 years (n = 85), who owned an AVG console, completed surveys, wore an activity monitor, and logged AVG use for 1 week. Regression analyses were used to examine variables associated with daily AVG minutes and to examine the relationship between daily AVG minutes and daily steps. RESULTS: Older and non-Hispanic white children played AVGs for fewer minutes per day (P's < 0.03). Greater peer support for playing AVGs was associated with greater daily AVG minutes (P = 0.003). Daily AVG minutes were not associated with daily steps. CONCLUSIONS: Results suggest that younger children and children who do not identify as non-Hispanic white may be more open to playing AVGs. Targeting social support in AVG interventions may increase time spent playing AVGs.


Subject(s)
Exercise/psychology , Video Games/psychology , Adolescent , Child , Female , Humans , Male , Psychometrics/instrumentation , Psychometrics/methods , Surveys and Questionnaires
15.
Nucleic Acids Res ; 32(9): 2768-75, 2004.
Article in English | MEDLINE | ID: mdl-15150343

ABSTRACT

Escherichia coli encodes YadB, a protein displaying 34% identity with the catalytic core of glutamyl-tRNA synthetase but lacking the anticodon-binding domain. We show that YadB is a tRNA modifying enzyme that evidently glutamylates the queuosine residue, a modified nucleoside at the wobble position of the tRNA(Asp) QUC anticodon. This conclusion is supported by a variety of biochemical data and by the inability of the enzyme to glutamylate tRNA(Asp) isolated from an E.coli tRNA-guanosine transglycosylase minus strain deprived of the capacity to exchange guanosine 34 with queuosine. Structural mimicry between the tRNA(Asp) anticodon stem and the tRNA(Glu) amino acid acceptor stem in prokaryotes encoding YadB proteins indicates that the function of these tRNA modifying enzymes, which we rename glutamyl-Q tRNA(Asp) synthetases, is conserved among prokaryotes.


Subject(s)
Anticodon/metabolism , Escherichia coli/enzymology , Escherichia coli/genetics , Glutamate-tRNA Ligase/chemistry , Glutamate-tRNA Ligase/metabolism , Nucleoside Q/metabolism , RNA, Transfer, Asp/metabolism , Acylation , Anticodon/chemistry , Anticodon/genetics , Base Sequence , Biological Evolution , Conserved Sequence , Glutamate-tRNA Ligase/genetics , Molecular Mimicry , Nucleoside Q/genetics , Periodic Acid/pharmacology , RNA, Bacterial/chemistry , RNA, Bacterial/genetics , RNA, Bacterial/metabolism , RNA, Transfer, Asp/chemistry , RNA, Transfer, Asp/genetics , RNA, Transfer, Glu/chemistry , RNA, Transfer, Glu/genetics , RNA, Transfer, Glu/metabolism
16.
Behav Ther ; 47(2): 198-212, 2016 Mar.
Article in English | MEDLINE | ID: mdl-26956652

ABSTRACT

Major depressive disorder is often comorbid with diabetes and associated with worse glycemic control. Exercise improves glycemic control and depression, and thus could be a parsimonious intervention for patients with comorbid diabetes and major depression. Because patients with diabetes and comorbid depression are often sedentary and lack motivation to exercise, we developed a group exercise intervention that integrates strategies from behavioral activation therapy for depression to increase motivation for and enjoyment of exercise. We conducted a 6-month pilot randomized controlled trial to test the feasibility of the behavioral activation exercise intervention (EX) for women with diabetes and depression. Of the 715 individuals who contacted us about the study, 29 participants were randomized to the EX condition or an enhanced usual care condition (EUC), which represents 4.1% of participants who initially contacted us. Inclusion criteria made recruitment challenging and limits the feasibility of recruiting women with diabetes and depression for a larger trial of the intervention. Retention was 96.5% and 86.2% at 3 and 6months. Participants reported high treatment acceptability; use of behavioral activation strategies and exercise class attendance was acceptable. No condition differences were observed for glycemic control, depressive symptoms, and physical activity, though depressive symptoms and self-reported physical activity improved over time. Compared to participants in the EUC condition, participants in the EX condition reported greater exercise enjoyment and no increase in avoidance behavior over time. Using behavioral activation strategies to increase exercise is feasible in a group exercise setting. However, whether these strategies can be delivered in a less intensive manner to a broader population of sedentary adults, for greater initiation and maintenance of physical activity, deserves further study.


Subject(s)
Behavior Therapy/methods , Depression/therapy , Diabetes Mellitus, Type 2/therapy , Exercise , Adult , Combined Modality Therapy , Depression/complications , Diabetes Mellitus, Type 2/complications , Feasibility Studies , Female , Health Behavior , Humans , Middle Aged , Patient Education as Topic/methods , Patient Satisfaction , Pilot Projects
17.
Biochimie ; 87(9-10): 847-61, 2005.
Article in English | MEDLINE | ID: mdl-16164993

ABSTRACT

Analysis of the completed genome sequences revealed presence in various bacteria of an open reading frame (ORF) encoding a polypeptide chain presenting important similarities with the catalytic domain of glutamyl-tRNA synthetases but deprived of the C-terminal anticodon-binding domain. This paralog of glutamyl-tRNA synthetases, the YadB protein, activates glutamate in the absence of tRNA and transfers the activated glutamate not on tRNA(Glu) but instead on tRNA(Asp). It has been shown that tRNA(Asp) is able to accept two amino acids: aspartate charged by aspartyl-tRNA synthetase and glutamate charged by YadB. The functional properties of YadB contrast with those of the canonical glutamyl-tRNA synthetases, which activate Glu only in presence of the cognate tRNA before aminoacylation of the 3'-end of tRNA. Biochemical approaches and mass spectrometry investigations revealed that YadB transfers the activated glutamate on the cyclopenthene-diol ring of the modified nucleoside queuosine posttranscriptionally inserted at the wobble position of the anticodon-loop to form glutamyl-queuosine. Unstability of the ester bond between the glutamate residue and the cyclopenthene-diol (half-life 7.5 min) explains why until now this modification escaped detection. Among Escherichia coli tRNAs containing queuosine in the wobble position, only tRNA(Asp) is substrate of YadB. Sequence comparison reveals a structural mimicry between the anticodon-stem and loop of tRNA(Asp) and the amino acid acceptor-stem of tRNA(Glu). YadB, renamed glutamyl-Q-tRNA(Asp) synthetase, constitutes the first enzyme structurally related to aminoacyl-tRNA synthetases which catalyzes a hypermodification in tRNA, and whose function seems to be conserved among prokaryotes. The discovery of glutamyl-Q-tRNA(Asp) synthetase breaks down the current paradigm according to which the catalytic domain of aminoacyl-tRNA synthetases recognizes the amino acid acceptor-stem of tRNA and aminoacylates the 3'-terminal ribose. The evolutionary significance of the existence of an aminoacyl-tRNA synthetase paralog dedicated to the hypermodification of a tRNA anticodon will be discussed.


Subject(s)
Amino Acyl-tRNA Synthetases/metabolism , Escherichia coli Proteins/metabolism , Glutamate-tRNA Ligase/metabolism , RNA, Transfer, Asp/metabolism , Amino Acid Sequence , Amino Acyl-tRNA Synthetases/chemistry , Amino Acyl-tRNA Synthetases/genetics , Aminoacylation , Anticodon , Crystallography , Escherichia coli Proteins/chemistry , Escherichia coli Proteins/genetics , Evolution, Molecular , Glutamate-tRNA Ligase/chemistry , Glutamate-tRNA Ligase/genetics , Molecular Sequence Data , Protein Conformation , RNA, Transfer, Asp/chemistry , Transfer RNA Aminoacylation
18.
J Mol Biol ; 337(2): 273-83, 2004 Mar 19.
Article in English | MEDLINE | ID: mdl-15003446

ABSTRACT

In the course of a structural genomics program aiming at solving the structures of Escherichia coli open reading frame products of unknown function, we have determined the structure of YadB at 1.5A using molecular replacement. The YadB protein is 298 amino acid residues long and displays 34% sequence identity with E.coli glutamyl-tRNA synthetase (GluRS). It is much shorter than GluRS, which contains 468 residues, and lacks the complete domain interacting with the tRNA anticodon loop. As E.coli GluRS, YadB possesses a Zn2+ located in the putative tRNA acceptor stem-binding domain. The YadB cluster uses cysteine residues as the first three zinc ligands, but has a weaker tyrosine ligand at the fourth position. It shares with canonical amino acid RNA synthetases a major functional feature, namely activation of the amino acid (here glutamate). It differs, however, from GluRSs by the fact that the activation step is tRNA-independent and that it does not catalyze attachment of the activated glutamate to E.coli tRNAGlu, but to another, as yet unknown tRNA. These results suggest thus a novel function, distinct from that of GluRSs, for the yadB gene family.


Subject(s)
Amino Acyl-tRNA Synthetases/genetics , Amino Acyl-tRNA Synthetases/metabolism , Escherichia coli Proteins/genetics , Escherichia coli Proteins/metabolism , Escherichia coli/enzymology , Escherichia coli/genetics , Adenosine Monophosphate/metabolism , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Amino Acyl-tRNA Synthetases/chemistry , Carrier Proteins/metabolism , Crystallography, X-Ray , Escherichia coli Proteins/chemistry , Genes, Bacterial , Glutamate-tRNA Ligase/chemistry , Glutamate-tRNA Ligase/genetics , Glutamate-tRNA Ligase/metabolism , Glutamic Acid/metabolism , Kinetics , Ligands , Models, Molecular , Molecular Sequence Data , Neoplasm Proteins/metabolism , Nuclear Proteins/metabolism , Protein Conformation , RNA, Transfer, Glu/metabolism , Sequence Homology, Amino Acid , Thermus thermophilus/enzymology , Thermus thermophilus/genetics , Zinc/metabolism
19.
Med Sci Sports Exerc ; 47(3): 631-9, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25003777

ABSTRACT

PURPOSE: Encouraging dog walking may increase physical activity in dog owners. This cluster-randomized controlled trial investigated whether a social networking Web site (Meetup™) could be used to deliver a multicomponent dog walking intervention to increase physical activity. METHODS: Sedentary dog owners (n = 102) participated. Eight neighborhoods were randomly assigned to the Meetup™ condition (Meetup™) or a condition where participants received monthly e-mails with content from the American Heart Association regarding increasing physical activity. The Meetup™ intervention was delivered over 6 months and consisted of newsletters, dog walks, community events, and an activity monitor. The primary outcome was steps; secondary outcomes included social support for walking, sense of community, perceived dog walking outcomes, barriers to dog walking, and feasibility of the intervention. RESULTS: Mixed-model analyses examined change from baseline to postintervention (6 months) and whether change in outcomes differed by condition. Daily steps increased over time (P = 0.04, d = 0.28), with no differences by condition. The time-condition interaction was significant for the perceived outcomes of dog walking (P = 0.04, d = 0.40), such that the Meetup™ condition reported an increase in the perceived positive outcomes of dog walking, whereas the American Heart Association condition did not. Social support, sense of community, and dog walking barriers did not significantly change. Meetup™ logins averaged 58.38 per week (SD, 11.62). Within 2 months of the intervention ending, organization of the Meetup™ groups transitioned from the study staff to Meetup™ members. CONCLUSIONS: Results suggest that a Meetup™ group is feasible for increasing physical activity in dog owners. Further research is needed to understand how to increase participation in the Meetup™ group and facilitate greater connection among dog owners.


Subject(s)
Dogs , Health Promotion/methods , Internet , Pets , Social Support , Walking , Adult , Animals , Consumer Behavior , Feasibility Studies , Female , Humans , Male , Middle Aged , Sedentary Behavior , Walking/psychology
20.
Protein J ; 33(2): 143-9, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24505021

ABSTRACT

Glutamyl-queuosine-tRNA(Asp) synthetase (Glu-Q-RS) and glutamyl-tRNA synthetase (GluRS), differ widely by their function although they share close structural resemblance within their catalytic core of GluRS. In particular both Escherichia coli GluRS and Glu-Q-RS contain a single zinc-binding site in their putative tRNA acceptor stem-binding domain. It has been shown that the zinc is crucial for correct positioning of the tRNA(Glu) acceptor-end in the active site of E. coli GluRS. To address the role of zinc ion in Glu-Q-RS, the C101S/C103S Glu-Q-RS variant is constructed. Energy dispersive X-ray fluorescence show that the zinc ion still remained coordinated but the variant became structurally labile and acquired aggregation capacity. The extent of aggregation of the protein is significantly decreased in presence of the small substrates and more particularly by adenosine triphosphate. Addition of zinc increased significantly the solubility of the variant. The aminoacylation assay reveals a decrease in activity of the variant even after addition of zinc as compared to the wild-type, although the secondary structure of the protein is not altered as shown by the Fourier transform infrared spectroscopy study.


Subject(s)
Amino Acyl-tRNA Synthetases/metabolism , Escherichia coli Proteins/metabolism , Escherichia coli/metabolism , Zinc/metabolism , Amino Acyl-tRNA Synthetases/chemistry , Binding Sites , Escherichia coli/chemistry , Escherichia coli Proteins/chemistry , Glutamate-tRNA Ligase/chemistry , Glutamate-tRNA Ligase/metabolism , Protein Conformation , Solubility , Spectroscopy, Fourier Transform Infrared , Zinc/chemistry
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