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1.
J Electrocardiol ; 76: 35-38, 2023.
Article in English | MEDLINE | ID: mdl-36434848

ABSTRACT

The idea that we can detect subacute potentially catastrophic illness earlier by using statistical models trained on clinical data is now well-established. We review evidence that supports the role of continuous cardiorespiratory monitoring in these predictive analytics monitoring tools. In particular, we review how continuous ECG monitoring reflects the patient and not the clinician, is less likely to be biased, is unaffected by changes in practice patterns, captures signatures of illnesses that are interpretable by clinicians, and is an underappreciated and underutilized source of detailed information for new mathematical methods to reveal.


Subject(s)
Clinical Deterioration , Electrocardiography , Humans , Electrocardiography/methods , Monitoring, Physiologic , Models, Statistical , Artificial Intelligence
2.
Hum Mol Genet ; 18(24): 4879-96, 2009 Dec 15.
Article in English | MEDLINE | ID: mdl-19779022

ABSTRACT

Nonsyndromic orofacial clefts are a common complex birth defect caused by genetic and environmental factors and/or their interactions. A previous genome-wide linkage scan discovered a novel locus for cleft lip with or without cleft palate (CL/P) at 9q22-q33. To identify the etiologic gene, we undertook an iterative and complementary fine mapping strategy using family-based CL/P samples from Colombia, USA and the Philippines. Candidate genes within 9q22-q33 were sequenced, revealing 32 new variants. Concurrently, 397 SNPs spanning the 9q22-q33 2-LOD-unit interval were tested for association. Significant SNP and haplotype association signals (P = 1.45E - 08) narrowed the interval to a 200 kb region containing: FOXE1, C9ORF156 and HEMGN. Association results were replicated in CL/P families of European descent and when all populations were combined the two most associated SNPs, rs3758249 (P = 5.01E - 13) and rs4460498 (P = 6.51E - 12), were located inside a 70 kb high linkage disequilibrium block containing FOXE1. Association signals for Caucasians and Asians clustered 5' and 3' of FOXE1, respectively. Isolated cleft palate (CP) was also associated, indicating that FOXE1 plays a role in two phenotypes thought to be genetically distinct. Foxe1 expression was found in the epithelium undergoing fusion between the medial nasal and maxillary processes. Mutation screens of FOXE1 identified two family-specific missense mutations at highly conserved amino acids. These data indicate that FOXE1 is a major gene for CL/P and provides new insights for improved counseling and genetic interaction studies.


Subject(s)
Chromosomes, Human, Pair 9/genetics , Cleft Lip/genetics , Cleft Palate/genetics , Forkhead Transcription Factors/genetics , Chromosome Mapping , Haplotypes , Humans , Lod Score
3.
Am J Med Genet A ; 149A(3): 408-14, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19215059

ABSTRACT

X-chromosome inactivation (XCI) is an epigenetic process used to regulate gene dosage in mammalian females by silencing genes on one X-chromosome. While the pattern of XCI is typically random in normal females, abnormalities of the X-chromosome may result in skewing due to disadvantaged cell growth. We describe a female patient with an X;1 translocation [46,X,t(X;1)(q28;q21)] and unusual pattern of XCI who demonstrates functional disomy of the Xq28 region distal to the translocation breakpoint. There was complete skewing of XCI in the patient, along with the atypical findings of an active normal X chromosome and an inactive derivative X. Characterization of the translocation revealed that the patient's Xq28 breakpoint interrupts the DKC1 gene. Molecular analysis of the breakpoint region revealed functional disomy of Xq28 genes distal to DKC1. We propose that atypical XCI occurred in the patient due to a post-inactivation cell selection mechanism likely initiated by disruption of DKC1. As a result, the pattern of XCI is opposite that of the expected for an X;autosome translocation. Therefore, we suggest the phenotypic abnormalities found in the patient are a result of functional disomy in the Xq28 region.


Subject(s)
Chromosomes, Human, X , Dosage Compensation, Genetic , Translocation, Genetic , Uniparental Disomy/genetics , X Chromosome Inactivation , Abnormalities, Multiple/genetics , Cell Cycle Proteins/genetics , Chromosome Breakage , Chromosome Mapping , Chromosomes, Artificial, Bacterial , DNA, Complementary , Female , Gene Dosage , Humans , In Situ Hybridization, Fluorescence , Nuclear Proteins/genetics , Oligonucleotide Array Sequence Analysis
4.
Proc Natl Acad Sci U S A ; 104(5): 1570-5, 2007 Jan 30.
Article in English | MEDLINE | ID: mdl-17242348

ABSTRACT

In contrast to the deregulated hepatocellular division that is a feature of many hepatic diseases and malignancies, physiologic liver growth during embryonic development and after partial hepatectomy (PH) in adults is characterized by tightly controlled cell proliferation. We used forward genetic screening in zebrafish to test the hypothesis that a similar genetic program governs physiologic liver growth during hepatogenesis and regeneration after PH. We identified the uhrf1 gene, a cell cycle regulator and transcriptional activator of top2a expression, as required for hepatic outgrowth and embryonic survival. By developing a methodology to perform PH on adult zebrafish, we found that liver regeneration inuhrf1+/- adult animals is impaired.uhrf1 transcript levels dramatically increase after PH in both mice, and zebrafish and top2a is not up-regulated in uhrf1+/- livers after PH. This indicates that uhrf1 is required for physiologic liver growth in both embryos and adults and illustrates that zebrafish livers regenerate.


Subject(s)
CCAAT-Enhancer-Binding Proteins/physiology , Liver Regeneration , Liver/embryology , Liver/physiology , Trans-Activators/biosynthesis , Trans-Activators/physiology , Zebrafish Proteins/biosynthesis , Zebrafish Proteins/physiology , Animals , Animals, Genetically Modified , CCAAT-Enhancer-Binding Proteins/metabolism , Cell Cycle , Cell Proliferation , Cyclin A/physiology , Cyclin A2 , Gene Expression Regulation, Developmental , In Situ Hybridization , Liver/anatomy & histology , Liver/metabolism , Mice , Mutation , Time Factors , Zebrafish
5.
Am J Med Genet A ; 125A(2): 135-44, 2004 Mar 01.
Article in English | MEDLINE | ID: mdl-14981713

ABSTRACT

Non-syndromic cleft lip with or without cleft palate (CL/P) is a genetically complex birth defect, with a prevalence from 1/500 to 1/1,000 live births. Evidence from linkage and linkage disequilibrium studies is contradictory suggesting that heterogeneity between study populations may exist. A recent report of a genome widescan in 92 sib pairs from the United Kingdom revealed suggestive linkage to 10 loci [Prescott et al., 2000]. The purpose of this study is to replicate those results and evaluate additional candidate genes in 49 Colombian and 13 Ohio families. Genotypes were obtained for STRPs at 1p36, 2p13 (TGFA), 4p16 (MSX1), 6p23-25, 6q25-27, 8q23-24, 11p12-q13, 12q13, 14q24 (TGFB3), 16q22-24, 17q12-21 (RARA), and Xcen-q21. Linkage was performed using parametric (dominant and recessive models) and non-parametric (GenehunterNPL and SimIBD) analyses. In addition, heterogeneity was analyzed using GenehunterHLOD, and association determined by the TDT. The Colombian families showed significant SimIBD results for 11p12-q13 (P = 0.034), 12q13 (P = 0.015), 16q22-24 (0.01), and 17q12-21 (0.009), while the Ohio families showed significant SimIBD results for 1p36 (P = 0.02), TGFA (P = 0.005), 6p23 (P = 0.004), 11p12-q13 (P = 0.048) and significant NPL results for TGFA (NPL = 3.01, P = 0.009), 4p16 (MNPL = 2.07, P = 0.03) and 12q13 (SNPL = 3.55, P = 0.007). Significant association results were obtained only for the Colombian families in the regions 1p36 (P = 0.046), 6p23-25 (P = 0.020), and 12q13 (P = 0.046). In addition several families yielded LOD scores ranging from 1.09 to 1.73, for loci at 4p16, 6p23-25, 16q22-24, and 17q13. These results confirm previous reports for these loci. However, the differences between the two populations suggest that population specific locus heterogeneity exists. This article contains supplementary material, which may be viewed at the American Journal of Medical Genetics website at http://www.interscience.wiley.com/jpages/0148-7299/suppmat/index.html.


Subject(s)
Cleft Lip/genetics , Cleft Palate/genetics , Genetic Linkage/genetics , Genetic Markers , Genetic Predisposition to Disease/genetics , Cleft Lip/pathology , Cleft Palate/pathology , Colombia , Family Health , Female , Genes, Dominant , Genes, Recessive , Genotype , Humans , Lod Score , Male , Microsatellite Repeats , Ohio , Pedigree , Prevalence
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