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1.

Structure and ion-dependent folding of k-junctions.

Li, Mengxiao; Deng, Jie; Peng, Xuemei; Wang, Jia; Wilson, Timothy J; Huang, Lin; Lilley, David M J.

RNA ; 29(9): 1411-1422, 2023 09.

Article in English | MEDLINE | ID: mdl-37311599

2.

Identification of KIAA1018/FAN1, a DNA repair nuclease recruited to DNA damage by monoubiquitinated FANCD2.

MacKay, Craig; Déclais, Anne-Cécile; Lundin, Cecilia; Agostinho, Ana; Deans, Andrew J; MacArtney, Thomas J; Hofmann, Kay; Gartner, Anton; West, Stephen C; Helleday, Thomas; Lilley, David M J; Rouse, John.

Cell ; 142(1): 65-76, 2010 Jul 09.

Article in English | MEDLINE | ID: mdl-20603015

3.

Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.

Peng, Xuemei; Liao, Wenjian; Lin, Xiaowei; Lilley, David M J; Huang, Lin.

Nucleic Acids Res ; 51(6): 2904-2914, 2023 04 11.

Article in English | MEDLINE | ID: mdl-36840714

4.

Biochemical and mechanistic analysis of the cleavage of branched DNA by human ANKLE1.

Freeman, Alasdair D J; Déclais, Anne-Cécile; Wilson, Timothy J; Lilley, David M J.

Nucleic Acids Res ; 51(11): 5743-5754, 2023 06 23.

Article in English | MEDLINE | ID: mdl-37216589

5.

Linking folding dynamics and function of SAM/SAH riboswitches at the single molecule level.

Liao, Ting-Wei; Huang, Lin; Wilson, Timothy J; Ganser, Laura R; Lilley, David M J; Ha, Taekjip.

Nucleic Acids Res ; 51(17): 8957-8969, 2023 09 22.

Article in English | MEDLINE | ID: mdl-37522343

6.

Catalytic mechanism and pH dependence of a methyltransferase ribozyme (MTR1) from computational enzymology.

McCarthy, Erika; Ekesan, Sölen; Giese, Timothy J; Wilson, Timothy J; Deng, Jie; Huang, Lin; Lilley, David M J; York, Darrin M.

Nucleic Acids Res ; 51(9): 4508-4518, 2023 05 22.

Article in English | MEDLINE | ID: mdl-37070188

7.

Ribocentre: a database of ribozymes.

Deng, Jie; Shi, Yaohuang; Peng, Xuemei; He, Yuanlin; Chen, Xiaoxue; Li, Mengxiao; Lin, Xiaowei; Liao, Wenjian; Huang, Yuanyin; Jiang, Taijiao; Lilley, David M J; Miao, Zhichao; Huang, Lin.

Nucleic Acids Res ; 51(D1): D262-D268, 2023 01 06.

Article in English | MEDLINE | ID: mdl-36177882

8.

Structure and mechanism of a methyltransferase ribozyme.

Deng, Jie; Wilson, Timothy J; Wang, Jia; Peng, Xuemei; Li, Mengxiao; Lin, Xiaowei; Liao, Wenjian; Lilley, David M J; Huang, Lin.

Nat Chem Biol ; 18(5): 556-564, 2022 05.

Article in English | MEDLINE | ID: mdl-35301479

9.

Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules.

Huang, Lin; Liao, Xinli; Li, Mengxiao; Wang, Jia; Peng, Xuemei; Wilson, Timothy J; Lilley, David M J.

Nucleic Acids Res ; 49(10): 5916-5924, 2021 06 04.

Article in English | MEDLINE | ID: mdl-33978763

10.

Structure and ligand binding of the ADP-binding domain of the NAD⁺ riboswitch.

Huang, Lin; Wang, Jia; Lilley, David M J.

RNA ; 26(7): 878-887, 2020 07.

Article in English | MEDLINE | ID: mdl-32295864

11.

Functional organization of box C/D RNA-guided RNA methyltransferase.

Yang, Zuxiao; Wang, Jiayin; Huang, Lin; Lilley, David M J; Ye, Keqiong.

Nucleic Acids Res ; 48(9): 5094-5105, 2020 05 21.

Article in English | MEDLINE | ID: mdl-32297938

12.

Crystal structure and ligand-induced folding of the SAM/SAH riboswitch.

Huang, Lin; Liao, Ting-Wei; Wang, Jia; Ha, Taekjip; Lilley, David M J.

Nucleic Acids Res ; 48(13): 7545-7556, 2020 07 27.

Article in English | MEDLINE | ID: mdl-32520325

13.

The role of RNA structure in translational regulation by L7Ae protein in archaea.

Huang, Lin; Ashraf, Saira; Lilley, David M J.

RNA ; 25(1): 60-69, 2019 01.

Article in English | MEDLINE | ID: mdl-30327333

14.

Structure-guided design of a high-affinity ligand for a riboswitch.

Huang, Lin; Wang, Jia; Wilson, Timothy J; Lilley, David M J.

RNA ; 25(4): 423-430, 2019 04.

Article in English | MEDLINE | ID: mdl-30609994

15.

Junction resolving enzymes use multivalency to keep the Holliday junction dynamic.

Zhou, Ruobo; Yang, Olivia; Déclais, Anne-Cécile; Jin, Hyeonseok; Gwon, Gwang Hyeon; Freeman, Alasdair D J; Cho, Yunje; Lilley, David M J; Ha, Taekjip.

Nat Chem Biol ; 15(3): 269-275, 2019 03.

Article in English | MEDLINE | ID: mdl-30664685

16.

Cooperative control of holliday junction resolution and DNA repair by the SLX1 and MUS81-EME1 nucleases.

Castor, Dennis; Nair, Nidhi; Déclais, Anne-Cécile; Lachaud, Christophe; Toth, Rachel; Macartney, Thomas J; Lilley, David M J; Arthur, J Simon C; Rouse, John.

Mol Cell ; 52(2): 221-33, 2013 Oct 24.

Article in English | MEDLINE | ID: mdl-24076219

17.

Structure and ligand binding of the glutamine-II riboswitch.

Huang, Lin; Wang, Jia; Watkins, Andrew M; Das, Rhiju; Lilley, David M J.

Nucleic Acids Res ; 47(14): 7666-7675, 2019 08 22.

Article in English | MEDLINE | ID: mdl-31216023

18.

The kink-turn in the structural biology of RNA.

Huang, Lin; Lilley, David M J.

Q Rev Biophys ; 51: e5, 2018 01.

Article in English | MEDLINE | ID: mdl-30912490

19.

Structure and ligand binding of the SAM-V riboswitch.

Huang, Lin; Lilley, David M J.

Nucleic Acids Res ; 46(13): 6869-6879, 2018 07 27.

Article in English | MEDLINE | ID: mdl-29931337

20.

A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.

Liu, Yijin; Freeman, Alasdair Dj; Déclais, Anne-Cécile; Lilley, David M J.

Nucleic Acids Res ; 46(20): 11089-11098, 2018 11 16.

Article in English | MEDLINE | ID: mdl-30247722

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