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1.
Nano Lett ; 24(12): 3670-3677, 2024 Mar 27.
Article in English | MEDLINE | ID: mdl-38483128

ABSTRACT

Functionalization of metallic surfaces by molecular monolayers is a key process in fields such as nanophotonics or biotechnology. To strongly enhance light-matter interaction in such monolayers, nanoparticle-on-a-mirror (NPoM) cavities can be formed by placing metal nanoparticles on such chemically functionalized metallic monolayers. In this work, we present a novel functionalization process of gold surfaces using 5-amino-2-mercaptobenzimidazole (5-A-2MBI) molecules, which can be used for upconversion from THz to visible frequencies. The synthesized surfaces and NPoM cavities are characterized by Raman spectroscopy, atomic force microscopy (AFM), and advancing-receding contact angle measurements. Moreover, we show that NPoM cavities can be efficiently integrated on a silicon-based photonic chip performing pump injection and Raman-signal extraction via silicon nitride waveguides. Our results open the way for the use of 5-A-2MBI monolayers in different applications, showing that NPoM cavities can be effectively integrated with photonic waveguides, enabling on-chip enhanced Raman spectroscopy or detection of infrared and THz radiation.

2.
Anaerobe ; 88: 102877, 2024 Jun 10.
Article in English | MEDLINE | ID: mdl-38866129

ABSTRACT

OBJECTIVES: This lab-scale study aimed to investigate the effect of total ammonia nitrogen (TAN) stress on the methanogenic activity and the taxonomic and functional profiles of the microbial community of anaerobic sludge (AS) from a full-scale bioreactor. METHODS: The AS was subjected to a stepwise increase in TAN every 14 days at concentrations of 1, 2, 2.5, 3, 3.5, and 4 g TAN/L (Acclimated-AS or AAS). This acclimation stage was followed by an ammonia stress stage (4 g/L). A blank-AS (BAS) was maintained without TAN during the acclimation stage. In the second stress stage (ST), the BAS was divided into two new treatments: a control (BAS') and one that received a shock load of TAN of 4 g/L (SBAS'). Methane production was measured, and a metagenomic analysis was conducted to describe the microbial community. RESULTS: A decrease in the relative abundance of Methanothrix soehngenii of 16 % was related to a decrease of 23 % in the methanogenic capacity of AAS when comparing with the final stage of BAS. However, recovery was observed at 3.5 g TAN/L, and a shift to methylotrophic metabolism occurred, indicated by a 4-fold increase in abundance of Methanosarcina mazei. The functional analysis of sludge metagenomes indicated that no statistical differences (p > 0.05, RM ANOVA) were found in the relative abundance of methanogenic genes that initiate acetoclastic and hydrogenotrophic pathways (acetyl-CoA synthetase, ACSS; acetate kinase, ackA; phosphate acetyltransferase, pta; and formylmethanofuran dehydrogenase subunit A, fwdA) into the BAS and AAS during the acclimation phase. The same was observed between groups of genes associated with methanogenesis from methylated compounds. In contrast, statistical differences (p < 0.05, one-way ANOVA) in the relative abundance of these genes were recorded during ST. The functional profiles of the genes involved in acetoclastic, hydrogenotrophic, and methylotrophic methanogenic pathways were brought to light for acclimatation and stress experimental stages. CONCLUSIONS: TAN inhibited methanogenic activity and acetoclastic metabolism. The gradual acclimatization to TAN leads to metabolic and taxonomic changes that allow for the subsequent recovery of methanogenic functionality. The study highlights the importance of adequate management of anaerobic bioprocesses with high nitrogen loads to maintain the methanogenic functionality of the microbial community.

3.
J Gen Intern Med ; 38(3): 600-609, 2023 02.
Article in English | MEDLINE | ID: mdl-35941492

ABSTRACT

OBJECTIVE: To investigate the relationship between ambient temperature and atmospheric pressure (AP) and the severity of heart failure (HF) decompensations. METHODS: We analysed patients coming from the Epidemioloy Acute Heart Failure Emergency (EAHFE) Registry, a multicentre prospective cohort study enrolling patients diagnosed with decompensated HF in 26 emergency departments (EDs) of 16 Spanish cities. We recorded patient and demographic data and maximum temperature (Tmax) and AP (APmax) the day before ED consultation. Associations between temperature and AP and severity endpoints were explored by logistic regression. We used restricted cubic splines to model continuous non-linear associations of temperature and AP with each endpoint. RESULTS: We analysed 16,545 patients. Daily Tmax and APmax (anomaly) of the day before patient ED arrival ranged from 0.8 to 41.6° and from - 61.7 to 69.9 hPa, respectively. A total of 12,352 patients (75.2%) were hospitalised, with in-hospital mortality in 1171 (7.1%). The probability of hospitalisation by HF decompensation showed a U-shaped curve versus Tmax and an increasing trend versus APmax. Regarding temperature, hospitalisation significantly increased from 20 °C (reference) upwards (25 °C: OR = 1.12, 95% CI = 1.04-1.21; 40 °C: 1.65, 1.13-2.40) and below 5.4 °C (5 °C: 1.21, 1.01-1.46). Concerning the mean AP of the city (anomaly = 0 hPa), hospitalisation increased when APmax (anomaly) was above + 7.0 hPa (atmospheric anticyclone; + 10 hPa: 1.14, 1.05-1.24; + 30 hPa: 2.02. 1.35-3.03). The lowest probability of mortality also corresponded to cold-mild temperatures and low AP, with a significant increased risk only found for Tmax above 24.3 °C (25 °C: 1.13, 1.01-1.27; 40 °C: 2.05, 1.15-3.64) and APmax (anomaly) above + 3.4 hPa (+ 10 hPa: 1.21, 1.07-1.36; + 30 hPa: 1.73, 1.06-2.81). Sensitivity analysis confirmed the main analysis results. CONCLUSION: Temperature and AP are independently associated with the severity of HF decompensations, with possible different effects on the need for hospitalisation and in-hospital mortality.


Subject(s)
Heart Failure , Humans , Temperature , Prospective Studies , Heart Failure/diagnosis , Emergency Service, Hospital , Hospitalization
4.
Ecotoxicology ; 32(2): 166-187, 2023 Mar.
Article in English | MEDLINE | ID: mdl-36689067

ABSTRACT

Aquatic ecosystems have been suffering deleterious effects due to the development of different economic activities. Metal(loid)s are one of the most persistent chemicals in environmental reservoirs, and may produce adverse effects on different organisms. Since fishes have been largely used in studies of metal(loid)s exposure, tilapia and largemouth bass were collected in three ecosystems from the Yaqui River Basin to measure the concentrations of metal(loid)s (chromium (Cr), copper (Cu), iron (Fe), manganese (Mn), nickel (Ni), zinc (Zn) arsenic (As), mercury (Hg), and selenium (Se)) and some biomarkers (somatic indices, metallothionein expression and histopathological analysis) in tissues of both species. Metal(loid) concentrations varied seasonally among ecosystems in tissues of both species. The elements varied seasonally and spatially in tissues of both species, with a general distribution of liver > gills > gonads. Also, biomarkers showed variations indicative that the fish species were exposed to different environmental stressor conditions. The highest values of some biomarkers were in largemouth bass, possibly due to differences in their biological characteristics, mainly feeding habits. The multivariate analysis showed positive associations between metal(loid)s and biomarkers, which are usually associated to the use of these elements in metabolic and/or regulatory physiological processes. Both fish species presented histological damage at different levels, from SI types (changes that are reversible for organ structure) to SII types (changes that are more severe but may be repairable). Taken together, the results from this study suggest that the Yaqui River Basin is moderately impacted by metals and metalloids.


Subject(s)
Bass , Cichlids , Mercury , Tilapia , Water Pollutants, Chemical , Animals , Bass/metabolism , Ecosystem , Rivers/chemistry , Mexico , Environmental Monitoring/methods , Metals/metabolism , Mercury/analysis , Biomarkers/metabolism , Water Pollutants, Chemical/analysis
5.
Expert Syst Appl ; 225: 120103, 2023 Sep 01.
Article in English | MEDLINE | ID: mdl-37090447

ABSTRACT

The sanitary emergency caused by COVID-19 has compromised countries and generated a worldwide health and economic crisis. To provide support to the countries' responses, numerous lines of research have been developed. The spotlight was put on effectively and rapidly diagnosing and predicting the evolution of the pandemic, one of the most challenging problems of the past months. This work contributes to the existing literature by developing a two-step methodology to analyze the transmission rate, designing models applied to territories with similar pandemic behavior characteristics. Virus transmission is considered as bacterial growth curves to understand the spread of the virus and to make predictions about its future evolution. Hence, an analytical clustering procedure is first applied to create groups of locations where the virus transmission rate behaved similarly in the different outbreaks. A curve decomposition process based on an iterative polynomial process is then applied, obtaining meaningful forecasting features. Information of the territories belonging to the same cluster is merged to build models capable of simultaneously predicting the 14-day incidence in several locations using Evolutionary Artificial Neural Networks. The methodology is applied to Andalusia (Spain), although it is applicable to any region across the world. Individual models trained for a specific territory are carried out for comparison purposes. The results demonstrate that this methodology achieves statistically similar, or even better, performance for most of the locations. In addition to being extremely competitive, the main advantage of the proposal lies in its complexity cost reduction. The total number of parameters to be estimated is reduced up to 93.51% for the short term and 93.31% for the mid-term forecasting, respectively. Moreover, the number of required models is reduced by 73.53% and 58.82% for the short- and mid-term forecasting horizons.

6.
Mol Psychiatry ; 26(11): 6482-6504, 2021 11.
Article in English | MEDLINE | ID: mdl-34021263

ABSTRACT

Mutations in SHANK genes play an undisputed role in neuropsychiatric disorders. Until now, research has focused on the postsynaptic function of SHANKs, and prominent postsynaptic alterations in glutamatergic signal transmission have been reported in Shank KO mouse models. Recent studies have also suggested a possible presynaptic function of SHANK proteins, but these remain poorly defined. In this study, we examined how SHANK2 can mediate electrophysiological, molecular, and behavioral effects by conditionally overexpressing either wild-type SHANK2A or the extrasynaptic SHANK2A(R462X) variant. SHANK2A overexpression affected pre- and postsynaptic targets and revealed a reversible, development-dependent autism spectrum disorder-like behavior. SHANK2A also mediated redistribution of Ca2+-permeable AMPA receptors between apical and basal hippocampal CA1 dendrites, leading to impaired synaptic plasticity in the basal dendrites. Moreover, SHANK2A overexpression reduced social interaction and increased the excitatory noise in the olfactory cortex during odor processing. In contrast, overexpression of the extrasynaptic SHANK2A(R462X) variant did not impair hippocampal synaptic plasticity, but still altered the expression of presynaptic/axonal signaling proteins. We also observed an attention-deficit/hyperactivity-like behavior and improved social interaction along with enhanced signal-to-noise ratio in cortical odor processing. Our results suggest that the disruption of pre- and postsynaptic SHANK2 functions caused by SHANK2 mutations has a strong impact on social behavior. These findings indicate that pre- and postsynaptic SHANK2 actions cooperate for normal neuronal function, and that an imbalance between these functions may lead to different neuropsychiatric disorders.


Subject(s)
Autism Spectrum Disorder , Animals , Autism Spectrum Disorder/genetics , Autism Spectrum Disorder/metabolism , Hippocampus/metabolism , Mice , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Neurons/metabolism , Receptors, AMPA/metabolism , Social Behavior
7.
J Toxicol Environ Health B Crit Rev ; 25(8): 405-421, 2022 11 17.
Article in English | MEDLINE | ID: mdl-36351281

ABSTRACT

Microplastics (MPs) are contaminants widely distributed in the environment and biota. Previously, most studies focused on identifying and characterizing microplastics in the marine environment, while their impact on freshwater ecosystems remains to be determined. This review summarizes recent findings regarding MPs physiological, immunological, and genetic effects on amphibians based upon the biological relevance of this species as indicators of freshwater pollution. Data demonstrated that MPs contamination may potentially alter various physiological processes in aquatic animals, mainly in the embryonic stages. It is worthwhile noting that adverse effects might be enhanced in synergy with other pollutants. However, amphibians might counteract the effect of MPs and other pollutants through microbiota present both in the intestine and on the skin. In addition, amphibian microbial composition might also be altered by MPs themselves in a manner that leads to unpredicted health consequences in amphibians.


Subject(s)
Environmental Pollutants , Water Pollutants, Chemical , Animals , Microplastics/toxicity , Plastics , Ecosystem , Environmental Monitoring , Water Pollutants, Chemical/toxicity , Water Pollutants, Chemical/analysis , Amphibians
8.
Arch Environ Contam Toxicol ; 83(1): 36-46, 2022 Jul.
Article in English | MEDLINE | ID: mdl-35690954

ABSTRACT

To balance the risks and benefits of fish consumption, selenium, fatty acids (DHA + EPA), and mercury in fishery products were determined. Analyzed products were canned tuna, frozen tuna (Thunnus albacares), smoked striped marlin (Tetrapturus audax), fresh Pacific sierra (Scomberomorus sierra), fresh dolphinfish (Coryphaena hippurus), fresh tilapia (Gerres cinereus), and fresh bullseye puffer (Sphoeroides annulatus). Mercury (µg g-1 wet weight) ranged from 0.01 (dolphinfish) to 0.23 (bullseye puffer); Se ranged from 0.12 to 0.25. EPA + DHA ranged from 1.16 to 10.72 mg g-1. Intake of EPA + DHA was comparable or above the recommended daily intake; Hg intake was below the reference dose but Se intake was below than recommended values for the different population groups. Considering the HBVSe, fishery products had positive values; i.e., they are healthy food items. According to the interaction of Hg and Se and the rate of fishery product consumption, the risk for consumers is below one percent.


Subject(s)
Mercury , Selenium , Animals , Fatty Acids , Fishes , Mercury/analysis , Mexico , Risk Assessment , Seafood , Selenium/analysis , Tuna
9.
J Environ Sci Health B ; 57(10): 775-785, 2022.
Article in English | MEDLINE | ID: mdl-36048159

ABSTRACT

Glyphosate [N-(phosphonomethyl)glycine] is one of the most popular herbicides worldwide. Globally, the use of glyphosate is increasing, and its residues have been found in drinking water and food products. The data regarding the possible toxic effects of this herbicide are controversial. Therefore, the aim of this study was to evaluate the effects of glyphosate at environmental concentrations in zebrafish (Danio rerio) embryos. Embryos were exposed to 0, 1, 100, and 1,000 µg/L glyphosate for 96 h, and mortality, heart rate, and hatching rate were evaluated. After the experiment, RNA was extracted from the embryos for transcriptional analysis. No mortality was recorded, and exposure to 100 µg/L and 1,000 µg/L of glyphosate resulted in lower heart rates at 48 h. In addition, RNA-seq analysis revealed that glyphosate exposure induced subtle changes in gene transcription profiles. We found 30 differentially expressed genes; however, the highest glyphosate concentration (1,000 µg/L) induced the greatest number of differentially expressed genes involved in oocyte maturation, metabolic processes, histone deacetylation, and nervous system development.


Subject(s)
Drinking Water , Herbicides , Animals , Embryo, Nonmammalian , Glycine/analogs & derivatives , Herbicides/pharmacology , Histones/metabolism , Histones/pharmacology , RNA/metabolism , RNA/pharmacology , Transcriptome , Zebrafish/genetics , Zebrafish/metabolism , Glyphosate
10.
Expert Syst Appl ; 207: 117977, 2022 Nov 30.
Article in English | MEDLINE | ID: mdl-35784094

ABSTRACT

Many types of research have been carried out with the aim of combating the COVID-19 pandemic since the first outbreak was detected in Wuhan, China. Anticipating the evolution of an outbreak helps to devise suitable economic, social and health care strategies to mitigate the effects of the virus. For this reason, predicting the SARS-CoV-2 transmission rate has become one of the most important and challenging problems of the past months. In this paper, we apply a two-stage mid and long-term forecasting framework to the epidemic situation in eight districts of Andalusia, Spain. First, an analytical procedure is performed iteratively to fit polynomial curves to the cumulative curve of contagions. Then, the extracted information is used for estimating the parameters and structure of an evolutionary artificial neural network with hybrid architectures (i.e., with different basis functions for the hidden nodes) while considering single and simultaneous time horizon estimations. The results obtained demonstrate that including polynomial information extracted during the training stage significantly improves the mid- and long-term estimations in seven of the eight considered districts. The increase in average accuracy (for the joint mid- and long-term horizon forecasts) is 37.61% and 35.53% when considering the single and simultaneous forecast approaches, respectively.

11.
Int J Colorectal Dis ; 36(4): 841-846, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33580275

ABSTRACT

PURPOSE: To examine long-term recurrence and anal continence of patients with anal fistula treated by fistulectomy and endorectal advancement flap repair. METHOD: Retrospective analysis of a prospective cohort of 115 patients (77.4% males, mean age 48.9 years) requiring 130 procedures, with a minimum follow-up of 10 years. Recurrence included reappearance of fistula after wound healing or presence of an abscess or chronic suppuration in the operated area at follow-up. Fecal incontinence was evaluated by the Cleveland Clinic Florida (CCF-FI) fecal incontinence scoring system. RESULTS: The mean and SD duration of the follow-up period was 155.5 (21.7) months. Recurrence developed in 31 (23.8%) cases, 28 (90.3%) of which within the first year, with a mean time to recurrence of 4.9 (2.9) months. The success rate was 76.2%. Anal continence was normal in 80% of patients before surgery, 63.8% at 1-year follow-up, and 71.5% at the end of follow-up (p < 0.001). Overall, continence worsened in 16.9% of cases. The mean (95% CI) CCF-FI score was 0.78 (0.35-1.21) preoperatively, 1.04 (0.64-1.43) at 1 year after surgery, 0.90 (0.52-1.29) at 5 years, and 1.16 (0.66-1.67) at the end of the study (p < 0.05). Neither recurrence nor continence was significantly associated with previous anal or fistula surgical procedures or complexity of the fistula. CONCLUSION: In this study, fistulectomy and endorectal advancement flap repair was associated with a long-term high rate of success. Most recurrences occurred within the first year and continence showed a mild deterioration over time. CLINICAL TRIAL REGISTRATION: Not applicable.


Subject(s)
Fecal Incontinence , Rectal Fistula , Anal Canal , Fecal Incontinence/etiology , Female , Follow-Up Studies , Humans , Male , Middle Aged , Prospective Studies , Rectal Fistula/surgery , Recurrence , Retrospective Studies , Treatment Outcome
12.
Anaerobe ; 68: 102296, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33207267

ABSTRACT

The present study used metagenomic sequencing, metagenome assembly and physical-chemical analysis to describe taxonomically and functionally 3 anaerobic bioreactors treating manure (LI), brewery (BR) and cornmeal (CO) wastes, and an anaerobic estuarine sediment (ES). Proteobacteria, Firmicutes, Euryarchaeota and Bacteroidetes were the most abundant Phyla in all metagenomes. A bacteria/archaea ratio of 3.4 was found in the industrial full-scale anaerobic bioreactors BR and CO, while ratios greater than 10 were found for LI and ES. Canonical correspondence analysis showed that environmental variables such as chemical oxygen demand, lipid content, and ammonium nitrogen influenced the ordination of taxonomic groups. Mesotoga prima was linked to high-temperature conditions, particularly in the BR bioreactor, along with the presence of heat shock proteins genes. Likewise, the hydrogenotrophic methanogen, Methanoregula formicica, was associated with high ammonium concentration in LI bioreactor. The interactions of microbes with specific methanogenic pathways were identified using Clusters of Orthologous Groups (COG) functions, while metagenome-assembled genomes (MAGs) further confirmed relationships between taxa and functions. Our results provide valuable information to understand microbial processes in anaerobic environments.


Subject(s)
Bacteria/classification , Bacteria/isolation & purification , Bioreactors/microbiology , Geologic Sediments/microbiology , Microbiota , Anaerobiosis , Bacteria/genetics , Manure/microbiology , Metagenome , Metagenomics , Oxygen/metabolism , Sewage/microbiology
13.
J Environ Sci Health B ; 56(6): 548-565, 2021.
Article in English | MEDLINE | ID: mdl-33999759

ABSTRACT

A pesticide characterization is presented for two highly technified valleys in northwest Mexico: Culiacan Valley (CV) in Sinaloa and Yaqui Valley (YV) in Sonora. Approximately 250,000 kg of active ingredients are used every year, half of which are considered highly hazardous pesticides. Legacy pesticides are still present in the soils of these valleys. The aim of the present study was to identify and quantify a wide variety of pesticides in soils and correlate their concentrations with historical and current use. Agricultural soils from both valleys were sampled and analyzed using accelerated solvent extraction and subsequent quantification by gas chromatography with selective detectors. The most frequently detected pesticides (mean, µg g-1) in CV were organochlorines (0.1967), organophosphates (0.0928), synthetic pyrethroids (0.2565), organonitrogen (0.0552), and miscellaneous pesticides (0.1851). In YV, the most frequently detected pesticides were organochlorines (0.8607), organophosphates (0.0001), synthetic pyrethroids (0.0124), and miscellaneous pesticides (0.0009). The pesticides were more diverse in CV compared to those of YV, which was based on the types of crops produced. Both locations presented highly hazardous pesticides, including concentrations above the action levels established by the Canadian Soil Quality Guide. A follow-up risk assessment is recommended to assess potential effects.


Subject(s)
Pesticide Residues/analysis , Soil Pollutants/analysis , Agriculture , Chromatography, Gas , Environmental Monitoring , Hydrocarbons, Chlorinated/analysis , Mexico , Organophosphates/analysis , Pyrethrins/analysis , Soil/chemistry
14.
Hum Mol Genet ; 27(11): 1879-1891, 2018 06 01.
Article in English | MEDLINE | ID: mdl-29635364

ABSTRACT

The MIR137 locus is a replicated genetic risk factor for schizophrenia. The risk-associated allele is reported to increase miR-137 expression and miR-137 overexpression alters synaptic transmission in mouse hippocampus. We investigated the cellular mechanisms underlying these observed effects in mouse hippocampal neurons in culture. First, we correlated the risk allele to expression of the genes in the MIR137 locus in human postmortem brain. Some evidence for increased MIR137HG expression was observed, especially in hippocampus of the disease-associated genotype. Second, in mouse hippocampal neurons, we confirmed previously observed changes in synaptic transmission upon miR-137 overexpression. Evoked synaptic transmission and spontaneous release were 50% reduced. We identified defects in release probability as the underlying cause. In contrast to previous observations, no evidence was obtained for selective synaptic vesicle docking defects. Instead, ultrastructural morphometry revealed multiple effects of miR-137 overexpression on docking, active zone length and total vesicle number. Moreover, proteomic analyses of neuronal protein showed that expression of Syt1 and Cplx1, previously reported as downregulated upon miR-137 overexpression, was unaltered. Immunocytochemistry of synapses overexpressing miR-137 showed normal Synaptotagmin1 and Complexin1 protein levels. Instead, our proteomic analyses revealed altered expression of genes involved in synaptogenesis. Concomitantly, synaptogenesis assays revealed 31% reduction in synapse formation. Taken together, these data show that miR-137 regulates synaptic function by regulating synaptogenesis, synaptic ultrastructure and synapse function. These effects are plausible contributors to the increased schizophrenia risk associated with miR-137 overexpression.


Subject(s)
MicroRNAs/genetics , Proteomics , Schizophrenia/genetics , Animals , Autopsy , Exocytosis/genetics , Gene Expression Regulation, Developmental , Hippocampus/growth & development , Hippocampus/pathology , Humans , Mice , Neurons/pathology , Schizophrenia/physiopathology , Synapses/genetics , Synaptic Transmission/genetics , Synaptic Vesicles/genetics
15.
Sensors (Basel) ; 20(21)2020 Oct 23.
Article in English | MEDLINE | ID: mdl-33113910

ABSTRACT

Expanding the performance and autonomous-decision capability of driver-assistance systems is critical in today's automotive engineering industry to help drivers and reduce accident incidence. It is essential to provide vehicles with the necessary perception systems, but without creating a prohibitively expensive product. In this area, the continuous and precise estimation of a road surface on which a vehicle moves is vital for many systems. This paper proposes a low-cost approach to solve this issue. The developed algorithm resorts to analysis of vibrations generated by the tyre-rolling movement to classify road surfaces, which allows for optimizing vehicular-safety-system performance. The signal is analyzed by means of machine-learning techniques, and the classification and estimation of the surface are carried out with the use of a self-organizing-map (SOM) algorithm. Real recordings of the vibration produced by tyre rolling on six different types of surface were used to generate the model. The efficiency of the proposed model (88.54%) and its speed of execution were compared with those of other classifiers in order to evaluate its performance.

16.
Environ Monit Assess ; 192(7): 475, 2020 Jul 01.
Article in English | MEDLINE | ID: mdl-32613317

ABSTRACT

The Western Sandpiper, Calidris mauri, is one of the most abundant migratory shorebirds in the Western Hemisphere. Both Bahia Santa Maria (SM) and Ensenada Pabellones (EP) in Sinaloa, Mexico, are critical wintering sites for this species. We described the presence and concentration of 16 organochlorine pesticides (OCPs) in Western Sandpiper muscle and liver tissues collected from SM and EP during the wintering (December-January) and premigration (March-April) periods of 2010 and 2011, respectively. The individual OCP concentrations varied from 0.003 to 0.127 µg/g dry weight (dw) and were lower than the established thresholds for either acute or chronic effects. Western Sandpipers in SM-Premigration had the highest frequency of OCPs (39.3%), followed by EP-Winter (32.1%) and SM-Winter (28.5%). The frequency of occurrence of all OCPs in the liver presented differences between sites during the wintering period as well as between the wintering and premigration periods in SM. As the primary organ responsible for pollutant detoxification, the liver may bioaccumulate these compounds. No clear trends were observed in muscle tissues or among age-sex groups. Our results showed evidence of OCP bioaccumulation in the Western Sandpiper during the wintering period, which may be related to hyperphagia during the premigration period and to the differential intake of OCP types and quantities between sites due to differences in their availability. However, these conclusions are based on relatively low sample sizes for some groups and require further study with non-pooled samples.


Subject(s)
Hydrocarbons, Chlorinated , Pesticides , Animals , Bioaccumulation , Environmental Monitoring , Mexico , Seasons
17.
Entropy (Basel) ; 22(4)2020 Apr 19.
Article in English | MEDLINE | ID: mdl-33286239

ABSTRACT

Alzheimer's disease has been extensively studied using undirected graphs to represent the correlations of BOLD signals in different anatomical regions through functional magnetic resonance imaging (fMRI). However, there has been relatively little analysis of this kind of data using directed graphs, which potentially offer the potential to capture asymmetries in the interactions between different anatomical brain regions. The detection of these asymmetries is relevant to detect the disease in an early stage. For this reason, in this paper, we analyze data extracted from fMRI images using the net4Lap algorithm to infer a directed graph from the available BOLD signals, and then seek to determine asymmetries between the left and right hemispheres of the brain using a directed version of the Return Random Walk (RRW). Experimental evaluation of this method reveals that it leads to the identification of anatomical brain regions known to be implicated in the early development of Alzheimer's disease in clinical studies.

18.
Proteomics ; 19(9): e1900027, 2019 05.
Article in English | MEDLINE | ID: mdl-30864274

ABSTRACT

A simple and fast immunoprecipitation (IP) protocol is designed with the sample preparation incorporated, applicable to both low and high throughput. This new protocol combines two procedures based on magnetic beads in 96-well plate format. Protein complexes are captured by antibodies and magnetic beads conjugated with protein A. Proteins are washed and on-bead digested by using Single-Pot solid-phase sample preparation (SP3). The whole IP-SP3 approach can be completed in one day, which is considerably faster compared to the classical approach. No major quantitative differences are found between SP3 and FASP (filter-aided sample preparation) or a longer incubation protocol. Taken together, the IP-SP3 protocol is a fast and economical approach easily applicable for large-scale protein interactome analysis.


Subject(s)
Immunoprecipitation/methods , Multiprotein Complexes/genetics , Proteome/genetics , Proteomics/methods , Antibodies/genetics , Antibodies/immunology , Immunoprecipitation/economics , Magnets , Multiprotein Complexes/chemistry , Proteomics/economics , Specimen Handling/economics , Staphylococcal Protein A/chemistry , Staphylococcal Protein A/genetics
19.
Biomarkers ; 24(2): 141-152, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30231650

ABSTRACT

CONTEXT: Fiddler crabs are important to the ecology of estuarine systems around the world, however, few studies have incorporated them as bioindicators. Urias estuary represents one of the most urbanized lagoons in the Gulf of California region and received discharges from different sources: shrimp farm, thermoelectric plant, fish processing plants, and untreated domestic and sewage wastes. OBJECTIVE: Assess the effects on anthropogenic contamination on female fiddler crabs reproduction, survival and genetic stability. METHODS: Exposition of wild crabs from a less impacted (reference) site to naturally contaminated sediments on under controlled laboratory conditions. Reproductive parameters, levels of DNA damage and mortality rates were measured, together with chemical analyses of sediments. RESULTS: The most contaminated sediments corresponded to the site where fish processing plants were located and the integrated biomarker response analysis revealed that the most adverse effects were produced by exposure to sediments from this site; these crabs showed higher mortality (67%) and poorer ovarian development than those crabs exposed to sediments from other sites. CONCLUSIONS: Female crabs under pollution stress are able to trade-off reproduction for survival, and surviving animals were able to restore genetic stability possibly by activating DNA repair mechanisms. Multiple biomarker approach discriminates different coastal contamination scenarios.


Subject(s)
Biomarkers/chemistry , Brachyura/chemistry , Environmental Monitoring , Water Pollutants, Chemical/isolation & purification , Animals , Female , Humans , Water Pollutants, Chemical/metabolism
20.
BMC Womens Health ; 19(1): 144, 2019 11 26.
Article in English | MEDLINE | ID: mdl-31771581

ABSTRACT

BACKGROUND: To evaluate the feasibility and clinical outcomes of vaginoplasties using a neovaginal polylactic acid prosthesis made with 3-dimensional (3D) printing technology as an intraneovaginal mould. METHODS: This was an interventionist, prospective, and multicentre clinical pilot investigation of a sanitary product (PACIENA prosthesis®) aiming to recruit and operate on 8 patients over 6 months with a follow-up period of 6 months. Only six patients with Rokitansky syndrome and one patient with Morris syndrome (7 patients in total) were operated on in two university hospitals: "La Fe", Valencia (H1) and "Arrixaca", Murcia (H2). INTERVENTIONS: Extensive surgical dissection of a defined space between the urethra and bladder in the front and of the rectum in the back as well as insertion of the PACIENA prosthesis® covered with Interceed® were performed. After 12 days, the prosthesis was changed to the silicone-covered version for daily application. RESULTS: In the 6 patients with Rokitansky syndrome (86%), the primary endpoint (satisfactory vaginal outcome in terms of appearance, function, and sensation without relevant additional morbidity) was achieved, although only 2 patients (28%) were sexually active at the end of 6 months of follow-up. The patient with Morris syndrome withdrew from the study after 1 month. Patients without bacterial colonization showed positive Schiller tests at 1 month, and subsequent biopsies showed adequate keratinization and epidermization. Epithelization and iodopositivity were delayed in the patients who developed inflammatory granulomas. CONCLUSIONS: Good anatomical and functional results can be achieved with the PACIENA prosthesis® for vaginoplasties without skin grafts. However, adequate patient selection and education, good surgical techniques and haemostasis, postoperative support, and prevention of bacterial colonization are important. TRIAL REGISTRATION: This clinical study was approved by the Ethical Clinical Investigation Committee of San Juan University Hospital on September 27, 2016, to be conducted in the participating centres; it was authorized by the Spanish Agency of Medicines and Health Products (AEMPS) on April 24, 2017 (exp. no. 585/16/EC), to be carried out in that hospitals.


Subject(s)
Congenital Abnormalities/surgery , Plastic Surgery Procedures/methods , Prostheses and Implants , Prosthesis Implantation/methods , Vagina/abnormalities , Vagina/surgery , Adult , Cellulose, Oxidized , Feasibility Studies , Female , Humans , Pilot Projects , Prospective Studies , Prosthesis Design , Treatment Outcome , Young Adult
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