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1.
MMWR Morb Mortal Wkly Rep ; 73(22): 514-516, 2024 Jun 06.
Article in English | MEDLINE | ID: mdl-38843099

ABSTRACT

Invasive meningococcal disease (IMD), caused by infection with the bacterium Neisseria meningitidis, usually manifests as meningitis or septicemia and can be severe and life-threatening (1). Six serogroups (A, B, C, W, X, and Y) account for most cases (2). N. meningitidis is transmitted person-to-person via respiratory droplets and oropharyngeal secretions. Asymptomatic persons can carry N. meningitidis and transmit the bacteria to others, potentially causing illness among susceptible persons. Outbreaks can occur in conjunction with large gatherings (3,4). Vaccines are available to prevent meningococcal disease. Antibiotic prophylaxis for close contacts of infected persons is critical to preventing secondary cases (2).


Subject(s)
Meningococcal Infections , Neisseria meningitidis , Humans , Meningococcal Infections/epidemiology , Meningococcal Infections/prevention & control , United States/epidemiology , France/epidemiology , Saudi Arabia/epidemiology , Young Adult , Adult , Adolescent , Male , Female , Neisseria meningitidis/isolation & purification , Child , Child, Preschool , United Kingdom/epidemiology , Middle Aged , Infant , Aged , Travel-Related Illness , Disease Outbreaks/prevention & control , Travel
2.
N Engl J Med ; 382(4): 309-317, 2020 01 23.
Article in English | MEDLINE | ID: mdl-31971676

ABSTRACT

BACKGROUND: In September 2015, the United Kingdom introduced the multicomponent meningococcal group B vaccine (4CMenB, Bexsero) into its publicly funded national immunization program at a reduced two-dose priming schedule for infants, with a 12-month booster. METHODS: Using data from enhanced national surveillance of invasive meningococcal disease in England, we evaluated the effect of vaccination on the incidence of meningococcal group B disease during the first 3 years of the program. The effect of vaccination was assessed by comparing the observed incidence of disease with the expected incidence based on the incidence during the 4-year prevaccination period in equivalent cohorts and with the use of disease trends in cohorts of children younger than 5 years of age who were not eligible to receive the vaccine. Vaccine effectiveness was estimated with the use of the indirect screening method. RESULTS: 4CMenB uptake in England remained consistently high; data from the first 3 months of 2018 showed that 92.5% of children had completed the primary immunizations by their first birthday and 87.9% had received all three doses by 2 years. From September 2015 through August 2018, the incidence of meningococcal group B disease in England (average annual birth cohort, approximately 650,000 infants) was significantly lower in vaccine-eligible cohorts than the expected incidence (63 observed cases as compared with 253 expected cases; incidence rate ratio, 0.25; 95% confidence interval [CI], 0.19 to 0.36), with a 75% reduction in age groups that were fully eligible for vaccination. The adjusted vaccine effectiveness against meningococcal group B disease was 52.7% (95% CI, -33.5 to 83.2) with a two-dose priming schedule for infants and 59.1% (95% CI, -31.1 to 87.2) with a two-dose priming schedule plus a booster at 1 year). Over the 3-year period, there were 169 cases of meningococcal group B disease in the vaccine-eligible cohorts, and an estimated 277 cases (95% CI, 236 to 323) were prevented. CONCLUSIONS: The 4CMenB program was associated with continued positive effect against meningococcal group B disease in children in England, and protection after three doses of the vaccine was sustained for at least 2 years. (Funded by Public Health England.).


Subject(s)
Immunization Programs , Meningococcal Infections/prevention & control , Meningococcal Vaccines/immunology , Neisseria meningitidis, Serogroup B , Child, Preschool , Confidence Intervals , England/epidemiology , Humans , Immunization Schedule , Immunization, Secondary , Incidence , Infant , Infant, Newborn , Meningococcal Infections/epidemiology , State Medicine , Treatment Outcome , United Kingdom
3.
J Infect Dis ; 226(12): 2204-2214, 2022 12 13.
Article in English | MEDLINE | ID: mdl-36322504

ABSTRACT

BACKGROUND: Neisseria meningitidis serogroup Y, especially ST-23 clonal complex (Y:cc23), represents a larger proportion of invasive meningococcal disease (IMD) in older adults compared to younger individuals. This study explored the meningococcal genetic variation underlying this association. METHODS: Maximum-likelihood phylogenies and the pangenome were analyzed using whole-genome sequence (WGS) data from 200 Y:cc23 isolates in the Neisseria PubMLST database. Genome-wide association studies (GWAS) were performed on WGS data from 250 Y:cc23 isolates from individuals with IMD aged ≥65 years versus < 65 years. RESULTS: Y:cc23 meningococcal variants did not cluster by age group or disease phenotype in phylogenetic analyses. Pangenome comparisons found no differences in presence or absence of genes in IMD isolates from the different age groups. GWAS identified differences in nucleotide polymorphisms within the transferrin-binding protein B (tbpB) gene in isolates from individuals ≥65 years of age. TbpB structure modelling suggests these may impact binding of human transferrin. CONCLUSIONS: These data suggest differential iron scavenging capacity amongst Y:cc23 meningococci isolated from older compared to younger patients. Iron acquisition is essential for many bacterial pathogens including the meningococcus. These polymorphisms may facilitate colonization, thereby increasing the risk of disease in vulnerable older people with altered nasopharyngeal microbiomes and nutritional status.


Subject(s)
Meningococcal Infections , Meningococcal Vaccines , Neisseria meningitidis , Humans , Aged , Neisseria meningitidis, Serogroup Y/genetics , Transferrin-Binding Protein B/genetics , Genome-Wide Association Study , Serogroup , Phylogeny , Meningococcal Infections/genetics , Meningococcal Infections/microbiology , Iron
4.
Clin Infect Dis ; 73(7): e1661-e1668, 2021 10 05.
Article in English | MEDLINE | ID: mdl-32845996

ABSTRACT

BACKGROUND: 4CMenB is a protein-based meningococcal B vaccine, but the vaccine antigens may be present on non-group B meningococci. In September 2015, the UK implemented 4CMenB into the national infant immunization program, alongside an emergency adolescent meningococcal ACWY (MenACWY) program to control a national outbreak of group W (MenW) disease caused by a hypervirulent strain belonging to the ST-11 clonal complex. The adolescent program aimed to provide direct protection for adolescents and indirect protection across the population. METHODS: Public Health England conducts meningococcal disease surveillance in England. MenW cases confirmed during 4 years before and 4 years after implementation of both vaccines were analyzed. Poisson models were constructed to estimate direct protection against MenW disease offered by the infant 4CMenB program along with the indirect impact of the adolescent MenACWY program in children eligible for 4CMenB but not MenACWY. RESULTS: Model estimates showed 69% (adjusted incidence rate ratio [aIRR], .31; 95% CI, .20-.67) and 52% (aIRR, .48; 95% CI, .28-.81) fewer MenW cases than predicted among age-cohorts that were fully- and partly-eligible for 4CMenB, respectively. There were 138 MenW cases in <5-year-olds. 4CMenB directly prevented 98 (95% CI, 34-201) cases, while the MenACWY program indirectly prevented an additional 114 (conservative) to 899 (extreme) cases over 4 years. Disease severity was similar in 4CMenB-immunized and unimmunized children. CONCLUSIONS: This is the first real-world evidence of direct protection afforded by 4CMenB against MenW:cc11 disease. 4CMenB has the potential to provide some protection against all meningococcal serogroups.


Subject(s)
Meningococcal Infections , Meningococcal Vaccines , Neisseria meningitidis , Adolescent , Child , Child, Preschool , England/epidemiology , Humans , Infant , Meningococcal Infections/epidemiology , Meningococcal Infections/prevention & control , Prospective Studies
5.
Emerg Infect Dis ; 27(9): 2495-2497, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34193335

ABSTRACT

Invasive meningococcal disease incidence in England declined from 1.93/100,000 persons (1,016 cases) in 2010-11 to 0.95/100,000 (530 cases) in 2018-19 and 0.74/100,000 in 2019-20 (419 cases). During national lockdown for the coronavirus disease pandemic (April-August 2020), incidence was 75% lower than during April-August 2019.


Subject(s)
COVID-19 , Meningococcal Infections , Meningococcal Vaccines , Neisseria meningitidis , Communicable Disease Control , England/epidemiology , Humans , Meningococcal Infections/epidemiology , Pandemics , SARS-CoV-2
6.
Lancet ; 395(10240): 1865-1877, 2020 06 13.
Article in English | MEDLINE | ID: mdl-32534649

ABSTRACT

Neisseria meningitidis is an obligate human commensal bacterium that frequently colonises the upper respiratory tract. Person-to-person transmission occurs via direct contact or through dispersion of respiratory droplets from a carrier of the bacteria, and can lead to invasive meningococcal disease. Rare sporadic cases of meningococcal urogenital and anorectal infections, including urethritis, proctitis, and cervicitis, have been reported, typically following orogenital contact with an oropharyngeal meningococcal carrier. The resulting infections were clinically indistinguishable from infections caused by Neisseria gonorrhoeae. Over the past two decades, there have also been multiple outbreaks across North America and Europe of invasive meningococcal disease among men who have sex with men (MSM). The responsible meningococci belong to a highly virulent and predominantly serogroup C lineage, including strains that are able to express nitrite reductase and grow in anaerobic environments, such as the urogenital and anorectal tracts. More recently, a distinct clade within this lineage has expanded to cause urethritis predominantly among men who have sex with women. Evolutionary events giving rise to this clade included the loss of the ability to express a capsule, and acquisition of several gonococcal alleles, including one allele encoding a highly efficient gonococcal nitrite reductase. Members of the clade continue to acquire gonococcal alleles, including one allele associated with decreased antibiotic susceptibility. This evolution has implications for the clinical and public health management of those who are infected and their close contacts, in terms of both antibiotic treatment, and prevention through vaccination.


Subject(s)
Female Urogenital Diseases/epidemiology , Male Urogenital Diseases/epidemiology , Meningococcal Infections/epidemiology , Meningococcal Infections/transmission , Neisseria meningitidis , Rectal Diseases/epidemiology , Sexually Transmitted Diseases, Bacterial/epidemiology , Female , Female Urogenital Diseases/microbiology , Female Urogenital Diseases/prevention & control , Heterosexuality , Homosexuality, Male , Humans , Infectious Disease Transmission, Vertical , Male , Male Urogenital Diseases/microbiology , Male Urogenital Diseases/prevention & control , Meningococcal Infections/prevention & control , Rectal Diseases/microbiology , Rectal Diseases/prevention & control , Sexually Transmitted Diseases, Bacterial/prevention & control
7.
Euro Surveill ; 25(15)2020 04.
Article in English | MEDLINE | ID: mdl-32317054

ABSTRACT

Since 2015 in the United States (US), the US Neisseria meningitidis urethritis clade (US_NmUC) has caused a large multistate outbreak of urethritis among heterosexual males. Its 'parent' strain caused numerous outbreaks of invasive meningococcal disease among men who have sex with men in Europe and North America. We highlight the arrival and dissemination of US_NmUC in the United Kingdom and the emergence of multiple antibiotic resistance. Surveillance systems should be developed that include anogenital meningococci.


Subject(s)
Neisseria meningitidis/isolation & purification , Urethritis/diagnosis , Adult , Disease Outbreaks , Drug Resistance, Microbial , Female , Humans , Male , Neisseria meningitidis/classification , Phylogeny , Polymorphism, Single Nucleotide , United Kingdom/epidemiology , United States , Urethritis/drug therapy , Urethritis/epidemiology
8.
J Infect Dis ; 220(7): 1109-1117, 2019 08 30.
Article in English | MEDLINE | ID: mdl-31119276

ABSTRACT

BACKGROUND: Since 2009, increases in the incidence of invasive meningococcal disease have occurred in the United Kingdom due to a sublineage of the Neisseria meningitidis serogroup W ST-11 clonal complex (hereafter, the "original UK strain"). In 2013, a descendent substrain (hereafter, the "2013 strain") became the dominant disease-causing variant. Multiple outer-membrane proteins of meningococci are subject to phase-variable switches in expression due to hypermutable simple-sequence repeats. We investigated whether alterations in phase-variable genes may have influenced the relative prevalence of the original UK and 2013 substrains, using multiple disease and carriage isolates. METHODS: Repeat numbers were determined by either bioinformatics analysis of whole-genome sequencing data or polymerase chain reaction amplification and sizing of fragments from genomic DNA extracts. Immunoblotting and sequence-translation analysis was performed to identify expression states. RESULTS: Significant increases in repeat numbers were detected between the original UK and 2013 strains in genes encoding PorA, NadA, and 2 Opa variants. Invasive and carriage isolates exhibited similar repeat numbers, but the absence of pilC gene expression was frequently associated with disease. CONCLUSIONS: Elevated repeat numbers in outer-membrane protein genes of the 2013 strain are indicative of higher phase-variation rates, suggesting that rapid expansion of this strain was due to a heightened ability to evade host immune responses during transmission and asymptomatic carriage.


Subject(s)
Bacterial Outer Membrane Proteins/genetics , Genetic Variation , Meningococcal Infections/microbiology , Neisseria meningitidis/genetics , Adhesins, Bacterial/genetics , DNA, Bacterial/analysis , Fimbriae Proteins/genetics , Gene Expression Regulation, Bacterial , Meningococcal Infections/epidemiology , Microsatellite Repeats/genetics , Molecular Epidemiology , Porins/genetics , Sequence Analysis, DNA , Serogroup , United Kingdom , Whole Genome Sequencing
9.
BMC Infect Dis ; 19(1): 522, 2019 Jun 14.
Article in English | MEDLINE | ID: mdl-31200658

ABSTRACT

BACKGROUND: To describe patients with inherited and acquired complement deficiency who developed invasive meningococcal disease (IMD) in England over the last decade. METHODS: Public Health England conducts enhanced surveillance of IMD in England. We retrospectively identified patients with complement deficiency who developed IMD in England during 2008-2017 and retrieved information on their clinical presentation, vaccination status, medication history, recurrence of infection and outcomes, as well as characteristics of the infecting meningococcal strain. RESULTS: A total of 16 patients with 20 IMD episodes were identified, including four with two episodes. Six patients had inherited complement deficiencies, two had immune-mediated conditions associated with complement deficiency (glomerulonephritis and vasculitis), and eight others were on Eculizumab therapy, five for paroxysmal nocturnal haemoglobinuria and three for atypical haemolytic uraemic syndrome. Cultures were available for 7 of 11 episodes among those with inherited complement deficiencies/immune-mediated conditions and the predominant capsular group was Y (7/11), followed by B (3/11) and non-groupable (1/11) strains. Among patients receiving Eculizumab therapy, 3 of the 9 episodes were due to group B (3/9), three others were NG but genotypically group B, and one case each of groups E, W and Y. CONCLUSIONS: In England, complement deficiency is rare among IMD cases and includes inherited disorders of the late complement pathway, immune-mediated disorders associated with low complement levels and patients on Eculizumab therapy. IMD due to capsular group Y predominates in patient with inherited complement deficiency, whilst those on Eculizumab therapy develop IMD due to more diverse capsular groups including non-encapsulated strains.


Subject(s)
Complement System Proteins/deficiency , Immunologic Deficiency Syndromes/complications , Meningococcal Infections/complications , Meningococcal Infections/microbiology , Neisseria meningitidis/genetics , Adolescent , Adult , Antibodies, Monoclonal, Humanized/adverse effects , Child , Child, Preschool , England/epidemiology , Genotype , Humans , Immunologic Deficiency Syndromes/etiology , Meningococcal Infections/epidemiology , National Health Programs/statistics & numerical data , Polysaccharides, Bacterial/genetics , Retrospective Studies , Young Adult
10.
Euro Surveill ; 24(1)2019 Jan.
Article in English | MEDLINE | ID: mdl-30621818

ABSTRACT

BackgroundIn 1999, the United Kingdom (UK) was the first country to introduce meningococcal group C (MenC) conjugate vaccination. This vaccination programme has evolved with further understanding, new vaccines and changing disease epidemiology.AimTo characterise MenC disease and population protection against MenC disease in England.MethodsBetween 1998/99-2015/16, surveillance data from England for laboratory-confirmed MenC cases were collated; using the screening method, we updated vaccine effectiveness (VE) estimates. Typing data and genomes were obtained from the Meningitis Research Foundation Meningococcus Genome Library and PubMLST Neisseria database. Phylogenetic network analysis of MenC cc11 isolates was undertaken. We compared bactericidal antibody assay results using anonymised sera from 2014 to similar data from 1996-1999, 2000-2004 and 2009.ResultsMenC cases fell from 883 in 1998/99 (1.81/100,000 population) to 42 cases (0.08/100,000 population) in 2015/16. Lower VE over time since vaccination was observed after infant immunisation (p = 0.009) and a single dose at 1-4 years (p = 0.03). After vaccination at 5-18 years, high VE was sustained for ≥ 8 years; 95.0% (95% CI: 76.0- 99.5%). Only 25% (75/299) children aged 1-14 years were seroprotected against MenC disease in 2014. Recent case isolates mostly represented two cc11 strains.ConclusionHigh quality surveillance has furthered understanding of MenC vaccines and improved schedules, maximising population benefit. The UK programme provides high direct and indirect protection despite low levels of seroprotection in some age groups. High-resolution characterisation supports ongoing surveillance of distinct MenC cc11 lineages.


Subject(s)
Meningitis, Meningococcal/epidemiology , Meningococcal Infections/epidemiology , Meningococcal Vaccines/immunology , Neisseria meningitidis, Serogroup C/immunology , Adolescent , Adult , Child , Child, Preschool , England/epidemiology , Female , Humans , Immunization Programs , Incidence , Infant , Male , Meningitis, Meningococcal/prevention & control , Meningococcal Infections/prevention & control , Meningococcal Vaccines/administration & dosage , Neisseria meningitidis, Serogroup C/isolation & purification , Seroepidemiologic Studies , Vaccination , Young Adult
11.
Euro Surveill ; 24(23)2019 06.
Article in English | MEDLINE | ID: mdl-31186079

ABSTRACT

In 2015, a suspected cluster of two invasive meningococcal disease (IMD) cases of serogroup W Neisseria meningitidis (MenW) occurred in elderly care home residents in England over 7 months; case investigations followed United Kingdom guidance. An incident control team reviewed epidemiological information. Phenotyping of case specimens informed public health action, including vaccination and throat swabs to assess carriage. Whole genome sequencing (WGS) was conducted on case and carrier isolates. Conventional phenotyping did not exclude a microbiological link between cases (case 1 W:2a:P1.5,2 and case 2 W:2a:NT). After the second case, 33/40 residents and 13/32 staff were vaccinated and 19/40 residents and 13/32 staff submitted throat swabs. Two MenW carriers and two MenC carriers were detected. WGS showed that MenW case and carrier isolates were closely related and possibly constituted a locally circulating strain. Meningococcal carriage, transmission dynamics and influence of care settings on IMD in older adults are poorly understood. WGS analyses performed following public health action helped to confirm the close relatedness of the case and circulating isolates despite phenotypic differences and supported actions taken. WGS was not sufficiently timely to guide public health practice.


Subject(s)
Carrier State/epidemiology , Meningococcal Infections/diagnosis , Meningococcal Vaccines/administration & dosage , Neisseria meningitidis, Serogroup W-135/isolation & purification , Neisseria meningitidis/isolation & purification , Serogroup , Aged , Aged, 80 and over , Carrier State/microbiology , Disease Outbreaks , England/epidemiology , Homes for the Aged , Humans , Incidence , Male , Meningococcal Infections/epidemiology , Meningococcal Infections/microbiology , Meningococcal Infections/transmission , Meningococcal Vaccines/immunology , Neisseria meningitidis/classification , Neisseria meningitidis/genetics , Neisseria meningitidis, Serogroup W-135/genetics , Nursing Homes , Phenotype , Whole Genome Sequencing/methods
12.
Emerg Infect Dis ; 24(4): 673-682, 2018 04.
Article in English | MEDLINE | ID: mdl-29553330

ABSTRACT

In September 2015, 4CMenB meningococcal vaccine was introduced into the United Kingdom infant immunization program without phase 3 trial information. Understanding the effect of this program requires enhanced surveillance of invasive meningococcal disease (IMD) Neisseria meningitidis isolates and comparison with prevaccination isolates. Bexsero Antigen Sequence Types (BASTs) were used to analyze whole-genome sequences of 3,073 prevaccine IMD N. meningitidis isolates obtained during 2010-2016. Isolates exhibited 803 BASTs among 31 clonal complexes. Frequencies of antigen peptide variants were factor H binding protein 1, 13.4%; Neisserial heparin-binding antigen 2, 13.8%; Neisseria adhesin A 8, 0.8%; and Porin A-VR2:P1.4,10.9%. In 2015-16, serogroup B isolates showed the highest proportion (35.7%) of exact matches to >1 Bexsero components. Serogroup W isolates showed the highest proportion (93.9%) of putatively cross-reactive variants of Bexsero antigens. Results highlighted the likely role of cross-reactive antigens. BAST surveillance of meningococcal whole-genome sequence data is rapid, scalable, and portable and enables international comparisons of isolates.


Subject(s)
Antigenic Variation/genetics , Genome, Bacterial , Meningitis, Meningococcal/epidemiology , Meningitis, Meningococcal/microbiology , Meningococcal Vaccines/genetics , Neisseria meningitidis/genetics , Antigens, Bacterial/genetics , Antigens, Bacterial/immunology , Genomics/methods , History, 21st Century , Humans , Immunogenicity, Vaccine , Meningitis, Meningococcal/history , Meningitis, Meningococcal/immunology , Meningococcal Vaccines/immunology , Multilocus Sequence Typing , Neisseria meningitidis/immunology , Peptides/immunology , Population Surveillance , United Kingdom/epidemiology
13.
J Clin Microbiol ; 56(9)2018 09.
Article in English | MEDLINE | ID: mdl-29950334

ABSTRACT

A recombinant NadA protein is one of the four major protective antigens of 4C-MenB (Bexsero), a vaccine developed for serogroup B Neisseria meningitidis (MenB). The meningococcal antigen typing system (MATS) is utilized as a high-throughput assay for assessing the invasive MenB strain coverage of 4C-MenB. Where present, the nadA gene is subject to phase-variable changes in transcription due to a 5'TAAA repeat tract located in a regulatory region. The promoter-containing intergenic region (IGR) sequences and 5'TAAA repeat numbers were determined for 906 invasive meningococcal disease isolates possessing the nadA gene. Exclusion of the 5'TAAA repeats reduced the number of IGR alleles from 82 to 23. Repeat numbers were associated with low and high levels of NadA expression by Western blotting and enzyme-linked immunosorbent assay (ELISA). Low-expression repeat numbers were present in 83% of 179 MenB isolates with NadA-2/3 or NadA-1 peptide variants and 68% of 480 MenW ST-11 complex isolates with NadA-2/3 peptide variants. For isolates with vaccine-compatible NadA variants, 93% of MATS-negative isolates were associated with low-expression repeat numbers, whereas 63% of isolates with MATS relative potency (RP) scores above the 95% confidence interval for the positive bactericidal threshold had high-expression repeat numbers. Analysis of 5'TAAA repeat numbers has potential as a rapid, high-throughput method for assessing strain coverage for the NadA component of 4C-MenB. A key application will be assessing coverage in meningococcal disease cases where confirmation is by PCR only and MATS cannot be applied.


Subject(s)
Adhesins, Bacterial/genetics , Meningococcal Infections/microbiology , Meningococcal Vaccines/immunology , Neisseria meningitidis, Serogroup B/immunology , Neisseria meningitidis, Serogroup B/isolation & purification , Alleles , Bacterial Typing Techniques , DNA, Intergenic/genetics , Genetic Variation , Humans , Neisseria meningitidis/classification , Neisseria meningitidis/genetics , Neisseria meningitidis/immunology , Neisseria meningitidis/isolation & purification , Neisseria meningitidis, Serogroup B/classification , Neisseria meningitidis, Serogroup B/genetics , Regulatory Sequences, Nucleic Acid/genetics , Transcription, Genetic
14.
Int J Med Microbiol ; 308(2): 256-262, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29153620

ABSTRACT

In England and Wales, approximately one half of all laboratory-confirmed meningococcal disease cases fail to yield a viable invasive isolate, primarily due to the use of antibiotics. Characterisation of non-culture meningococci has been restricted to the detection or sequencing of specific gene targets within clinical specimens. In this study we investigated the ability of the Agilent SureSelectXT kit to facilitate DNA enrichment and genome sequencing of meningococcal DNA within a small panel of blood and CSF specimens. A target-specific RNA oligonucleotide bait library was used to capture and enrich the bacterial DNA prior to next generation sequencing. A positive correlation between meningococcal DNA amount and genome coverage was observed with eight of the ten specimens producing genomes of acceptable quality. All commonly-used typing information derived from each acceptable non-culture genome matched those of an isolate from the same patient and the paired genomes showed a high level of congruence across indexed loci. We estimate that this technique could be used to perform whole genome sequencing on up to ∼45% of the positive specimens received by the Public Health England's Meningococcal Reference Unit. Further optimisation of the extraction and/or enrichment processes may, however, increase the proportion of non-culture cases from which quality genomes can be obtained.


Subject(s)
Genome, Bacterial/genetics , Neisseria meningitidis/genetics , Nucleic Acid Amplification Techniques/methods , Base Sequence , DNA, Bacterial/genetics , England , Humans , Meningococcal Infections/microbiology , Neisseria meningitidis/isolation & purification , Sequence Analysis, DNA/methods , Wales , Whole Genome Sequencing/methods
15.
BMC Genomics ; 18(1): 398, 2017 05 22.
Article in English | MEDLINE | ID: mdl-28532434

ABSTRACT

BACKGROUND: Serogroup A Neisseria meningitidis (NmA) was the cause of the 2011 meningitis epidemics in Chad. This bacterium, often carried asymptomatically, is considered to be an "accidental pathogen"; however, the transition from carriage to disease phenotype remains poorly understood. This study examined the role genetic diversity might play in this transition by comparing genomes from geographically and temporally matched invasive and carried NmA isolates. RESULTS: All 23 NmA isolates belonged to the ST-5 clonal complex (cc5). Ribosomal MLST comparison with other publically available NmA:cc5 showed that isolates were closely related, although those from Chad formed two distinct branches and did not cluster with other NmA, based on their MLST profile, geographical and temporal location. Whole genome MLST (wgMLST) comparison identified 242 variable genes among all Chadian isolates and clustered them into three distinct phylogenetic groups (Clusters 1, 2, and 3): no systematic clustering by disease or carriage source was observed. There was a significant difference (p = 0.0070) between the mean age of the individuals from which isolates from Cluster 1 and Cluster 2 were obtained, irrespective of whether the person was a case or a carrier. CONCLUSIONS: Whole genome sequencing provided high-resolution characterization of the genetic diversity of these closely related NmA isolates. The invasive meningococcal isolates obtained during the epidemic were not homogeneous; rather, a variety of closely related but distinct clones were circulating in the human population with some clones preferentially colonizing specific age groups, reflecting a potential age-related niche adaptation. Systematic genetic differences were not identified between carriage and disease isolates consistent with invasive meningococcal disease being a multi-factorial event resulting from changes in host-pathogen interactions along with the bacterium.


Subject(s)
Asymptomatic Diseases/epidemiology , Epidemics , Genomics , Meningitis, Meningococcal/epidemiology , Neisseria meningitidis/genetics , Neisseria meningitidis/physiology , Serogroup , Adolescent , Adult , Chad/epidemiology , Child , Child, Preschool , Cluster Analysis , Female , Humans , Infant , Male , Whole Genome Sequencing , Young Adult
16.
BMC Microbiol ; 17(1): 40, 2017 Feb 21.
Article in English | MEDLINE | ID: mdl-28222677

ABSTRACT

BACKGROUND: The meningococcal capsule is an important virulence determinant. Unencapsulated meningococci lacking capsule biosynthesis genes and containing the capsule null locus (cnl) are predominantly non-pathogenic. Rare cases of invasive meningococcal disease caused by cnl isolates belonging to sequence types (ST) and clonal complexes (cc) ST-845 (cc845), ST-198 (cc198), ST-192 (cc192) and ST-53 (cc53) have been documented. The clinical significance of these isolates however remains unclear. We identified four invasive cnl meningococci through laboratory-based surveillance in South Africa from 2003 through 2013, which we aimed to characterize using whole genome data. RESULTS: One isolate [NG: P1.7-2,30: F1-2: ST-53 (cc53)] contained cnl allele 12, and caused empyema in an adult male with bronchiectasis from tuberculosis, diabetes mellitus and a smoking history. Three isolates were NG: P1.18-11,42-2: FΔ: ST-192 (cc192) and contained cnl allele 2. One patient was an adolescent male with meningitis. The remaining two isolates were from recurrent disease episodes (8 months apart) in a male child with deficiency of the sixth complement component, and with the exception of two single nucleotide polymorphisms, contained identical core genomes. The ST-53 (cc53) isolate possessed alleles for NHBA peptide 191 and fHbp variant 2; whilst the ST-192 (cc192) isolates contained NHBA peptide 704 and fHbp variant 3. All four isolates lacked nadA. Comparison of the South African genomes to 61 additional cnl genomes on the PubMLST Neisseria database ( http://pubmlst.org/neisseria/ ), determined that most putative virulence genes could be found in both invasive and carriage phenotypes. CONCLUSIONS: Although rare, invasive disease by cnl meningococci may be associated with host immunodeficiency and such patients may benefit from protein-based meningococcal vaccines.


Subject(s)
Bacterial Capsules/genetics , Genes, Bacterial/genetics , Meningococcal Infections/microbiology , Neisseria meningitidis/genetics , Adhesins, Bacterial/genetics , Adolescent , Alleles , Antigens, Bacterial/genetics , Bacterial Outer Membrane Proteins/genetics , Bacterial Proteins/genetics , Base Sequence , Bronchiectasis/complications , Carrier Proteins/genetics , Child , Child, Preschool , Diabetes Complications , Diabetes Mellitus , Empyema/microbiology , Genetic Loci , Genetic Markers/genetics , Humans , Male , Meningitis, Meningococcal/epidemiology , Meningococcal Infections/epidemiology , Meningococcal Vaccines/immunology , Middle Aged , Molecular Sequence Annotation , Neisseria meningitidis/cytology , Neisseria meningitidis/isolation & purification , Neisseria meningitidis/pathogenicity , Phenotype , Phylogeny , Polymorphism, Single Nucleotide , Sequence Analysis, DNA , Smoking , South Africa/epidemiology , Tuberculosis/complications , Virulence/genetics , Young Adult
17.
Emerg Infect Dis ; 22(2): 309-11, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26811872

ABSTRACT

Serum samples from children immunized with a meningococcal serogroup B vaccine demonstrated potent serum bactericidal antibody activity against the hypervirulent Neisseria meningitidis serogroup W strain circulating in England. The recent introduction of this vaccine into the United Kingdom national immunization program should also help protect infants against this endemic strain.


Subject(s)
Cross Reactions/immunology , Meningitis, Meningococcal/prevention & control , Meningococcal Vaccines/immunology , Neisseria meningitidis/immunology , Antibodies, Bacterial/blood , Antibodies, Bacterial/immunology , Humans , Infant , Infant, Newborn , Neisseria meningitidis/classification , Neisseria meningitidis/genetics , United Kingdom/epidemiology , Vaccination
18.
Euro Surveill ; 21(45)2016 Nov 10.
Article in English | MEDLINE | ID: mdl-27918265

ABSTRACT

The 23rd World Scout Jamboree in 2015 took place in Japan and included over 33,000 scouts from 162 countries. Within nine days of the meeting ending, six cases of laboratory-confirmed invasive serogroup W meningococcal disease occurred among scouts and their close contacts in Scotland and Sweden. The isolates responsible were identical to one-another by routine typing and, where known (4 isolates), belonged to the ST-11 clonal complex (cc11) which is associated with large outbreaks and high case fatality rates. Recent studies have demonstrated the need for high-resolution genomic typing schemes to assign serogroup W cc11 isolates to several distinct strains circulating globally over the past two decades. Here we used such schemes to confirm that the Jamboree-associated cases constituted a genuine outbreak and that this was due to a novel and rapidly expanding strain descended from the strain that has recently expanded in South America and the United Kingdom. We also identify the genetic differences that define the novel strain including four point mutations and three putative recombination events involving the horizontal exchange of 17, six and two genes, respectively. Noteworthy outcomes of these changes were antigenic shifts and the disruption of a transcriptional regulator.


Subject(s)
Disease Outbreaks , Meningococcal Infections/epidemiology , Meningococcal Infections/microbiology , Neisseria meningitidis, Serogroup W-135/genetics , Neisseria meningitidis, Serogroup W-135/isolation & purification , Bacterial Typing Techniques , Genes, Bacterial , Genome, Viral , Genotype , Global Health , Humans , Molecular Epidemiology , Neisseria meningitidis, Serogroup W-135/classification , Neisseria meningitidis, Serogroup W-135/pathogenicity , Phylogeny , Scotland/epidemiology , Serogroup , Serotyping , Sweden/epidemiology , Travel , Virulence/genetics
19.
Clin Infect Dis ; 60(4): 578-85, 2015 Feb 15.
Article in English | MEDLINE | ID: mdl-25389259

ABSTRACT

BACKGROUND: In England and Wales, the incidence of invasive meningococcal disease has been declining for more than a decade, but meningococcal group W (MenW) cases have been increasing since 2009. METHODS: Public Health England conducts enhanced national surveillance of invasive meningococcal disease in England and Wales. Detailed clinical information was obtained for all laboratory-confirmed MenW cases diagnosed during 3 epidemiologic years (2010-2011 to 2012-2013), alongside whole-genome sequencing analysis of the clinical isolates. RESULTS: The year-on-year increase in invasive MenW disease across all age groups since 2009-2010 was due to rapid endemic expansion of a single clone belonging to the sequence type 11 complex (cc11). In 2013-2014, MenW was responsible for 15% of all invasive meningococcal disease. All but 1 of the recent MenW:cc11 isolates were very closely related, consistent with recent clonal expansion. Clinical follow-up of all 129 MenW cases diagnosed during 2010-2011 to 2012-2013 revealed that most patients were previously healthy (n = 105 [81%]), had not travelled abroad prior to illness and the majority presented with septicemia (n = 63 [49%]), meningitis (n = 16 [12%]) or both (n = 21 [16%]); however, one-quarter had atypical presentations including pneumonia (n = 15 [12%]), septic arthritis (n = 9 [7%]), and epiglottitis/supraglottitis (n = 5 [4%]). Forty-eight (37%) required intensive care and 15 (12%) died. There was no association between infecting strain, clinical disease, or outcome. CONCLUSIONS: The recent increase in invasive MenW disease in England and Wales is due to rapid endemic expansion of a single clone belonging to cc11 and is associated with severe disease with unusual clinical presentations. This increase will require careful monitoring in the coming years.


Subject(s)
Endemic Diseases , Meningitis, Meningococcal/epidemiology , Meningitis, Meningococcal/microbiology , Meningococcal Infections/epidemiology , Meningococcal Infections/microbiology , Neisseria meningitidis/classification , Adolescent , Adult , Aged , Arthritis, Infectious/epidemiology , Arthritis, Infectious/microbiology , Bacterial Capsules/classification , Child , Child, Preschool , England/epidemiology , Epidemiological Monitoring , Female , Follow-Up Studies , Genome, Bacterial , Humans , Infant , Male , Meningococcal Infections/classification , Meningococcal Infections/mortality , Middle Aged , Neisseria meningitidis/genetics , Neisseria meningitidis/isolation & purification , Phenotype , Phylogeny , Pneumonia, Bacterial/epidemiology , Pneumonia, Bacterial/microbiology , Prospective Studies , Retrospective Studies , Sepsis/epidemiology , Sepsis/microbiology , Sequence Analysis, DNA , Supraglottitis/epidemiology , Supraglottitis/microbiology , Wales/epidemiology , Young Adult
20.
Euro Surveill ; 20(49)2015.
Article in English | MEDLINE | ID: mdl-26676305

ABSTRACT

The lack of an anti-capsular vaccine against serogroup B meningococcal disease has necessitated the exploration of alternative vaccine candidates, mostly proteins exhibiting varying degrees of antigenic variation. Analysis of variants of antigen-encoding genes is facilitated by publicly accessible online sequence repositories, such as the Neisseria PubMLST database and the associated Meningitis Research Foundation Meningococcus Genome Library (MRF-MGL). We investigated six proposed meningococcal vaccine formulations by deducing the prevalence of their components in the isolates represented in these repositories. Despite high diversity, a limited number of antigenic variants of each of the vaccine antigens were prevalent, with strong associations of particular variant combinations with given serogroups and genotypes. In the MRF-MGL and globally, the highest levels of identical sequences were observed with multicomponent/multivariant vaccines. Our analyses further demonstrated that certain combinations of antigen variants were prevalent over periods of decades in widely differing locations, indicating that vaccine formulations containing a judicious choice of antigen variants have potential for long-term protection across geographic regions. The data further indicated that formulations with multiple variants would be especially relevant at times of low disease incidence, as relative diversity was higher. Continued surveillance is required to monitor the changing prevalence of these vaccine antigens.


Subject(s)
Antigens, Bacterial/immunology , Databases, Factual , Meningitis, Meningococcal/prevention & control , Meningococcal Vaccines/immunology , Neisseria meningitidis, Serogroup B/genetics , Adolescent , Adult , Age Distribution , Aged , Bacterial Outer Membrane Proteins/genetics , Child , Child, Preschool , Female , Genotype , Humans , Infant , Infant, Newborn , Male , Meningococcal Infections/prevention & control , Middle Aged , Sequence Analysis, DNA , Serogroup , Young Adult
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