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1.
Hum Genomics ; 16(1): 39, 2022 09 18.
Article in English | MEDLINE | ID: mdl-36117207

ABSTRACT

BACKGROUND: Clinical classification of autistic patients based on current WHO criteria provides a valuable but simplified depiction of the true nature of the disorder. Our goal is to determine the biology of the disorder and the ASD-associated genes that lead to differences in the severity and variability of clinical features, which can enhance the ability to predict clinical outcomes. METHOD: Novel Whole Exome Sequencing data from children (n = 33) with ASD were collected along with extended cognitive and linguistic assessments. A machine learning methodology and a literature-based approach took into consideration known effects of genetic variation on the translated proteins, linking them with specific ASD clinical manifestations, namely non-verbal IQ, memory, attention and oral language deficits. RESULTS: Linear regression polygenic risk score results included the classification of severe and mild ASD samples with a 81.81% prediction accuracy. The literature-based approach revealed 14 genes present in all sub-phenotypes (independent of severity) and others which seem to impair individual ones, highlighting genetic profiles specific to mild and severe ASD, which concern non-verbal IQ, memory, attention and oral language skills. CONCLUSIONS: These genes can potentially contribute toward a diagnostic gene-set for determining ASD severity. However, due to the limited number of patients in this study, our classification approach is mostly centered on the prediction and verification of these genes and does not hold a diagnostic nature per se. Substantial further experimentation is required to validate their role as diagnostic markers. The use of these genes as input for functional analysis highlights important biological processes and bridges the gap between genotype and phenotype in ASD.


Subject(s)
Autism Spectrum Disorder , Autistic Disorder , Autism Spectrum Disorder/diagnosis , Autism Spectrum Disorder/genetics , Autistic Disorder/complications , Autistic Disorder/diagnosis , Computational Biology , Genetic Background , Humans , Phenotype
2.
Brief Bioinform ; 20(3): 825-841, 2019 05 21.
Article in English | MEDLINE | ID: mdl-29186317

ABSTRACT

Almost 2500 years after Hippocrates' observations on health and its direct association to the gastrointestinal tract, a paradigm shift has recently occurred, making the gut and its symbionts (bacteria, fungi, archaea and viruses) a point of convergence for studies. It is nowadays well established that the gut microflora's compositional diversity regulates via its genes (the microbiome) the host's health and provides preliminary insights into disease progression and regulation. The microbiome's involvement is evident in immunological and physiological studies that link changes in its biodiversity to its contributions to the host's phenotype but also in neurological investigations, substantiating the aptly named gut-brain axis. The definitive mechanisms of this last bidirectional interaction will be our main focus because it presents researchers with a new conundrum. In this review, we prospect current literature for computational analysis methodologies that accommodate the need for better understanding of the microbiome-gut-brain interactions and neurological disorder onset and progression, through cross-disciplinary systems biology applications. We will present bioinformatics tools used in exploring these synergies that help build and interpret microbial 16S ribosomal RNA data sets, produced by shotgun and high-throughput sequencing of healthy and neurological disorder samples stored in biological databases. These approaches provide alternative means for researchers to form hypotheses to their inquests faster, cheaper and swith precision. The goal of these studies relies on the integration of combined metagenomics and metabolomics assessments. An accurate characterization of the microbiome and its functionality can support new diagnostic, prognostic and therapeutic strategies for neurological disorders, customized for each individual host.


Subject(s)
Brain/metabolism , Computational Biology/methods , Dysbiosis , Gastrointestinal Microbiome , Nervous System Diseases/microbiology , Humans , Metagenomics
3.
Blood ; 128(5): 680-5, 2016 08 04.
Article in English | MEDLINE | ID: mdl-27259980

ABSTRACT

Myeloma immunosurveillance remains incompletely understood. We have demonstrated proteolytic processing of the matrix proteoglycan, versican (VCAN), in myeloma tumors. Whereas intact VCAN exerts tolerogenic activities through Toll-like receptor 2 (TLR2) binding, the immunoregulatory consequences of VCAN proteolysis remain unknown. Here we show that human myeloma tumors displaying CD8(+) infiltration/aggregates underwent VCAN proteolysis at a site predicted to generate a glycosaminoglycan-bereft N-terminal fragment, versikine Myeloma-associated macrophages (MAMs), rather than tumor cells, chiefly produced V1-VCAN, the precursor to versikine, whereas stromal cell-derived ADAMTS1 was the most robustly expressed VCAN-degrading protease. Purified versikine induced early expression of inflammatory cytokines interleukin 1ß (IL-1ß) and IL-6 by human myeloma marrow-derived MAMs. We show that versikine signals through pathways both dependent and independent of Tpl2 kinase, a key regulator of nuclear factor κB1-mediated MAPK activation in macrophages. Unlike intact VCAN, versikine-induced Il-6 production was partially independent of Tlr2. In a model of macrophage-myeloma cell crosstalk, versikine induced components of "T-cell inflammation," including IRF8-dependent type I interferon transcriptional signatures and T-cell chemoattractant CCL2. Thus the interplay between stromal cells and myeloid cells in the myeloma microenvironment generates versikine, a novel bioactive damage-associated molecular pattern that may facilitate immune sensing of myeloma tumors and modulate the tolerogenic consequences of intact VCAN accumulation. Therapeutic versikine administration may potentiate T-cell-activating immunotherapies.


Subject(s)
Immunomodulation , Multiple Myeloma/immunology , Multiple Myeloma/pathology , Proteolysis , Tumor Microenvironment , Versicans/metabolism , Alarmins/metabolism , Animals , Humans , Interferon Regulatory Factors/metabolism , Transcription, Genetic
4.
Blood ; 123(21): 3305-15, 2014 May 22.
Article in English | MEDLINE | ID: mdl-24723682

ABSTRACT

Targeted modulation of microenvironmental regulatory pathways may be essential to control myeloma and other genetically/clonally heterogeneous cancers. Here we report that human myeloma-associated monocytes/macrophages (MAM), but not myeloma plasma cells, constitute the predominant source of interleukin-1ß (IL-1ß), IL-10, and tumor necrosis factor-α at diagnosis, whereas IL-6 originates from stromal cells and macrophages. To dissect MAM activation/cytokine pathways, we analyzed Toll-like receptor (TLR) expression in human myeloma CD14(+) cells. We observed coregulation of TLR2 and TLR6 expression correlating with local processing of versican, a proteoglycan TLR2/6 agonist linked to carcinoma progression. Versican has not been mechanistically implicated in myeloma pathogenesis. We hypothesized that the most readily accessible target in the versican-TLR2/6 pathway would be the mitogen-activated protein 3 (MAP3) kinase, TPL2 (Cot/MAP3K8). Ablation of Tpl2 in the genetically engineered in vivo myeloma model, Vκ*MYC, led to prolonged disease latency associated with plasma cell growth defect. Tpl2 loss abrogated the "inflammatory switch" in MAM within nascent myeloma lesions and licensed macrophage repolarization in established tumors. MYC activation/expression in plasma cells was independent of Tpl2 activity. Pharmacologic TPL2 inhibition in human monocytes led to dose-dependent attenuation of IL-1ß induction/secretion in response to TLR2 stimulation. Our results highlight a TLR2/6-dependent TPL2 pathway as novel therapeutic target acting nonautonomously through macrophages to control myeloma progression.


Subject(s)
MAP Kinase Kinase Kinases/immunology , Macrophages/pathology , Multiple Myeloma/immunology , Multiple Myeloma/pathology , Proto-Oncogene Proteins/immunology , Animals , Cytokines/analysis , Cytokines/immunology , Drug Discovery , Gene Deletion , Gene Expression Regulation, Neoplastic , Humans , Interleukin-1beta/analysis , Interleukin-1beta/immunology , MAP Kinase Kinase Kinases/antagonists & inhibitors , MAP Kinase Kinase Kinases/genetics , Macrophages/immunology , Mice , Mice, Inbred C57BL , Multiple Myeloma/diagnosis , Multiple Myeloma/genetics , Proto-Oncogene Proteins/antagonists & inhibitors , Proto-Oncogene Proteins/genetics , Toll-Like Receptor 2/agonists , Toll-Like Receptor 6/genetics , Toll-Like Receptor 6/immunology , Tumor Microenvironment
5.
Br J Haematol ; 160(6): 779-84, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23252623

ABSTRACT

Benefit from cytotoxic therapy in myeloma may be limited by the persistence of residual tumour cells within protective niches. We have previously shown that monocytes/macrophages acquire a proinflammatory transcriptional profile in the myeloma microenvironment. Here we report constitutive activation of MAP3K8 kinase-dependent pathways that regulate the magnitude and extent of inflammatory activity of monocytes/macrophages within myeloma niches. In myeloma tumour cells, MAP3K8 acts as mitogen-induced MAP3K in mitosis and is required for TNFα-mediated ERK activation. Pharmacological MAP3K8 inhibition results in dose-dependent, tumour cell-autonomous apoptosis despite contact with primary stroma. MAP3K8 blockade may disrupt crucial macrophage-tumour cell interactions within myeloma niches.


Subject(s)
MAP Kinase Kinase Kinases/metabolism , Macrophages/enzymology , Macrophages/pathology , Monocytes/enzymology , Monocytes/pathology , Multiple Myeloma/enzymology , Multiple Myeloma/pathology , Proto-Oncogene Proteins/metabolism , Humans , MAP Kinase Kinase Kinases/antagonists & inhibitors , Multiple Myeloma/drug therapy , Neoplasm, Residual , Protein Kinase Inhibitors/pharmacology , Proto-Oncogene Proteins/antagonists & inhibitors , Tumor Cells, Cultured
6.
Biomolecules ; 12(2)2022 02 06.
Article in English | MEDLINE | ID: mdl-35204764

ABSTRACT

Alzheimer's Disease (AD) is a neurodegenerative disorder characterized by a progressive loss of memory and a general cognitive decline leading to dementia. AD is characterized by changes in the behavior of the genome and can be traced across multiple brain regions and cell types. It is mainly associated with ß-amyloid deposits and tau protein misfolding, leading to neurofibrillary tangles. In recent years, however, research has shown that there is a high complexity of mechanisms involved in AD neurophysiology and functional decline enabling its diverse presentation and allowing more questions to arise. In this study, we present a computational approach to facilitate brain region-specific analysis of genes and biological processes involved in the memory process in AD. Utilizing current genetic knowledge we provide a gene set of 265 memory-associated genes in AD, combinations of which can be found co-expressed in 11 different brain regions along with their functional role. The identified genes participate in a spectrum of biological processes ranging from structural and neuronal communication to epigenetic alterations and immune system responses. These findings provide new insights into the molecular background of AD and can be used to bridge the genotype-phenotype gap and allow for new therapeutic hypotheses.


Subject(s)
Alzheimer Disease , Biological Phenomena , Cognitive Dysfunction , Alzheimer Disease/metabolism , Amyloid beta-Peptides/metabolism , Brain/metabolism , Cognitive Dysfunction/metabolism , Humans , tau Proteins/metabolism
7.
FASEB J ; 22(9): 3264-75, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18524868

ABSTRACT

The growth factor, vascular endothelial growth factor (VEGF), induces angiogenesis and promotes endothelial cell (EC) proliferation. Affymetrix gene array analyses show that VEGF stimulates the expression of a cluster of nuclear-encoded mitochondrial genes, suggesting a role for VEGF in the regulation of mitochondrial biogenesis. We show that the serine threonine kinase Akt3 specifically links VEGF to mitochondrial biogenesis. A direct comparison of Akt1 vs. Akt3 gene silencing was performed in ECs and has uncovered a discrete role for Akt3 in the control of mitochondrial biogenesis. Silencing of Akt3, but not Akt1, results in a decrease in mitochondrial gene expression and mtDNA content. Nuclear-encoded mitochondrial gene transcripts are also found to decrease when Akt3 expression is silenced. Concurrent with these changes in mitochondrial gene expression, lower O(2) consumption was observed. VEGF stimulation of the major mitochondrial import protein TOM70 is also blocked by Akt3 inhibition. In support of a role for Akt3 in the regulation of mitochondrial biogenesis, Akt3 silencing results in the cytoplasmic accumulation of the master regulator of mitochondrial biogenesis, PGC-1alpha, and a reduction in known PGC-1alpha target genes. Finally, a subtle but significant, abnormal mitochondrial phenotype is observed in the brain tissue of AKT3 knockout mice. These results suggest that Akt3 is important in coordinating mitochondrial biogenesis with growth factor-induced increases in cellular energy demands.


Subject(s)
Mitochondria/physiology , Proto-Oncogene Proteins c-akt/physiology , Vascular Endothelial Growth Factor A/physiology , Animals , Cells, Cultured , Endothelium, Vascular/cytology , Heat-Shock Proteins/metabolism , Humans , Mice , Mice, Knockout , Mitochondria/drug effects , Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha , Transcription Factors/metabolism
8.
Cancer Res ; 67(1): 167-77, 2007 Jan 01.
Article in English | MEDLINE | ID: mdl-17210696

ABSTRACT

Ample evidence to date links the phosphatidylinositol 3-kinase-regulated protein kinase Akt with the induction and progression of human cancer, including breast cancer. However, there are three Akt isoforms with limited information about their specificity during oncogenesis. This study addresses the role of the three isoforms in polyoma middle T (PyMT) and ErbB2/Neu-driven mammary adenocarcinomas in mice. The effects of ablation of Akt1, Akt2, and Akt3 on the induction and the biology of these tumors were dramatically different, with ablation of Akt1 inhibiting, ablation of Akt2 accelerating, and ablation of Akt3 having a small, not statistically significant, inhibitory effect on tumor induction by both transgenes. Whereas PyMT-induced tumors are all invasive, Akt1(-/-)Neu-induced tumors are more invasive than Akt2(-/-)Neu-induced tumors. Invasiveness, however, does not always correlate with metastasis. Ablation of individual Akt isoforms does not affect the development of the mammary gland during puberty or the expression of the transgenes. Akt ablation, therefore, influences tumor induction by modulating transgene-induced oncogenic signaling. Immunostaining for Ki-67 and cyclin D1 and terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling assays on tissue sections revealed that the delay of tumor induction in Akt1 knockout mice is due to the inhibitory effects of Akt1 ablation on cell proliferation and survival. Given that these animal models exhibit significant similarities to human breast cancer, the results of the present study may have significant translational implications because they may influence how Akt inhibitors will be used in the treatment of human cancer.


Subject(s)
Adenocarcinoma/enzymology , Cell Transformation, Neoplastic/metabolism , Mammary Neoplasms, Experimental/enzymology , Proto-Oncogene Proteins c-akt/deficiency , Adenocarcinoma/genetics , Adenocarcinoma/pathology , Animals , Apoptosis/physiology , Cell Growth Processes/physiology , Cell Transformation, Neoplastic/genetics , Cell Transformation, Neoplastic/pathology , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Neoplastic , Genes, erbB-2 , Mammary Glands, Animal/enzymology , Mammary Neoplasms, Experimental/genetics , Mammary Neoplasms, Experimental/pathology , Mammary Tumor Virus, Mouse/genetics , Mice , Mice, Transgenic , Proto-Oncogene Proteins c-akt/genetics
9.
J Cell Physiol ; 217(2): 468-77, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18561256

ABSTRACT

The three Akt isoforms differ in their ability to transduce oncogenic signals initiated by the Neu and PyMT oncogenes in mammary epithelia. As a result, ablation of Akt1 inhibits and ablation of Akt2 accelerates mammary tumor development by both oncogenes, while ablation of Akt3 is phenotypically almost neutral. Since the risk of breast cancer development in humans correlates with multiple late pregnancies, we embarked on a study to determine whether individual Akt isoforms also differ in their ability to transduce hormonal and growth factor signals during pregnancy, lactation and post-lactation involution. The results showed that the ablation of Akt1 delays the differentiation of the mammary epithelia during pregnancy and lactation, and that the ablation of Akt2 has the opposite effect. Finally, ablation of Akt3 results in minor defects, but its phenotype is closer to that of the wild type mice. Whereas the phenotype of the Akt1 ablation is cell autonomous, that of Akt2 is not. The ablation of Akt1 promotes apoptosis and accelerates involution, whereas the ablation of Akt2 inhibits apoptosis and delays involution. Mammary gland differentiation during pregnancy depends on the phosphorylation of Stat5a, which is induced by prolactin, a hormone that generates signals transduced via Akt. Here we show that the ablation of Akt1, but not the ablation of Akt2 or Akt3 interferes with the phosphorylation of Stat5a during late pregnancy and lactation. We conclude that the three Akt isoforms have different roles in mammary gland differentiation during pregnancy and this may reflect differences in hormonal signaling.


Subject(s)
Cell Differentiation , Epithelial Cells/enzymology , Lactation , Mammary Glands, Animal/enzymology , Proto-Oncogene Proteins c-akt/metabolism , Animals , Apoptosis , Cell Proliferation , Cell Survival , Epithelial Cells/transplantation , Female , Genotype , Isoenzymes , Mammary Glands, Animal/growth & development , Mammary Glands, Animal/transplantation , Mice , Mice, Inbred C57BL , Mice, Inbred NOD , Mice, Knockout , Mice, SCID , Milk/metabolism , Phenotype , Phosphorylation , Pregnancy , Proto-Oncogene Proteins c-akt/deficiency , Proto-Oncogene Proteins c-akt/genetics , STAT5 Transcription Factor/metabolism , Signal Transduction , Time Factors
10.
Front Immunol ; 9: 2064, 2018.
Article in English | MEDLINE | ID: mdl-30250474

ABSTRACT

Background: Type 2 diabetes mellitus (T2D) is characterized by susceptibility to bacterial infections and impaired wound healing. Neutrophil extracellular traps (NETs) and the cathelicidin antimicrobial peptide LL-37 have been implicated both in defense against bacterial infections and in wound healing process. Recently, it was shown that macrolide antibiotic clarithromycin induces the release of LL-37-bearing NETs. In T2D there has not been identified any link between NETs and LL-37 and the effect of clarithromycin in neutrophils/NETs is unknown yet. Methods: Peripheral blood neutrophils were obtained from treatment-naive hyperglycemic T2D patients (naive), normoglycemic T2D patients under antidiabetic treatment (well-controlled) and healthy donors (controls). NET release and NET proteins were studied. Co-culture systems of NET structures with E. coli NCTC 9001 and primary skin fibroblasts were deployed to examine the in vitro antibacterial and fibrotic NET properties, respectively. The effect of clarithromycin was also investigated. Analysis was performed using immunofluorescence confocal microscopy, myeloperoxidase-DNA complex and LL-37 ELISA, immunoblotting and qRT-PCR. Results: NETs were characterized by the presence of LL-37, however they lacked antibacterial activity, in both groups of T2D patients. Clarithromycin significantly increased the externalization of LL-37 on NETs generated from well-controlled T2D neutrophils, thus restoring NET antibacterial capacity and promoting the wound healing process via fibroblast activation and differentiation. Conclusion: This study suggests that clarithromycin may add further advantage to well-controlled T2D patients, by enhancing their antibacterial defense and improving wound healing capacity of fibroblasts, through upregulation of LL-37 on NET structures.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Antimicrobial Cationic Peptides/metabolism , Clarithromycin/therapeutic use , Diabetes Mellitus, Type 2/drug therapy , Extracellular Traps/metabolism , Fibroblasts/pathology , Neutrophils/immunology , Aged , Cell Differentiation , Cells, Cultured , Coculture Techniques , Female , Fibrosis , Humans , Male , Middle Aged , Wound Healing/drug effects , Cathelicidins
11.
Drug Discov Today ; 22(5): 805-813, 2017 05.
Article in English | MEDLINE | ID: mdl-28363518

ABSTRACT

When faced with time- and money-consuming problems, new practices in pharmaceutical R&D arose when trying to alleviate them. Drug repositioning has great promise and when combined with today's computational power and intelligence it becomes more precise and potent. This work showcases current approaches of creating a computational pipeline for drug repositioning, along with an extensive example of how researchers can influence therapeutic approaches and further understanding, through either single or multiple disease studies. This paradigm is based on three neurodegenerative diseases with pathophysiological similarities. It is our goal to provide the readers with all the information needed to enrich their research and note expectations along the way.


Subject(s)
Drug Repositioning , Neurodegenerative Diseases/drug therapy , Animals , Computational Biology , Computer Simulation , Humans
12.
PLoS One ; 11(5): e0154484, 2016.
Article in English | MEDLINE | ID: mdl-27136460

ABSTRACT

BACKGROUND: The role of neutrophils in tumour biology is largely unresolved. Recently, independent studies indicated either neutrophil extracellular traps (NETs) or Tissue Factor (TF) involvement in cancer biology and associated thrombosis. However, their individual or combined role in colonic adenocarcinoma is still unexplored. METHODS: Colectomy tissue specimens and variable number of draining lymph nodes were obtained from ten patients with adenocarcinoma of the colon. NETs deposition and neutrophil presence as well as TF expression were examined by immunostaining. The effect of NETs on cancer cell growth was studied in in vitro co-cultures of Caco-2 cell line and acute myeloid leukemia primary cells. Proliferation and apoptosis/necrosis of cancer cells were analyzed by flow cytometry. RESULTS: TF-bearing NETs and neutrophil localization were prominent in tumour sections and the respective metastatic lymph nodes. Interestingly, neutrophil infiltration and NETs concentration were gradually reduced from the tumour mass to the distal margin. The in vitro-generated NETs impeded growth of cancer cell cultures by inducing apoptosis and/or inhibiting proliferation. CONCLUSIONS: These data support further the role of neutrophils and NETs in cancer biology. We also suggest their involvement on cancer cell growth.


Subject(s)
Colonic Neoplasms/immunology , Colonic Neoplasms/pathology , Colorectal Neoplasms/immunology , Colorectal Neoplasms/pathology , Neutrophil Infiltration/immunology , Neutrophil Infiltration/physiology , Neutrophils/immunology , Neutrophils/physiology , Caco-2 Cells , Extracellular Traps/immunology , Extracellular Traps/physiology , Flow Cytometry , Humans , Tumor Cells, Cultured
13.
Oncogene ; 21(2): 291-8, 2002 Jan 10.
Article in English | MEDLINE | ID: mdl-11803472

ABSTRACT

Amplification and/or overexpression of the receptor tyrosine kinase HER2/Neu and the cell cycle regulatory gene cyclin D1 are frequently associated with human breast cancer. We studied the functional significance of cyclin D1 in Neu-induced mammary oncogenesis by developing mice overexpressing either wild-type or mutant Neu in a cyclin D1 deficient background. The absence of cyclin D1 suppresses mammary tumor formation induced by the wild-type or activated mutant form of Neu, which promote multi- and single-step progression of tumorigenesis, respectively. These data indicate that cyclin D1 is preferentially required for Neu-mediated signal transduction pathways in mammary oncogenesis. Significantly, 35% of mutant Neu/cyclin D1(-/-) mice regained mammary tumor potential due to compensation by cyclin E. Thus, shared targets of cyclins D1 and E are important in modulating Neu function in mammary tumorigenesis. Our results imply that the combinatorial inhibition of cyclins D1 and E might be useful in the treatment of malignancies induced by Neu.


Subject(s)
Cyclin D1/genetics , Cyclin E/physiology , Genes, erbB-2 , Mammary Neoplasms, Experimental/pathology , Receptor, ErbB-2/genetics , Suppression, Genetic , Adenocarcinoma/genetics , Adenocarcinoma/prevention & control , Animals , Cyclin D1/deficiency , Cyclin D1/physiology , Female , Kinetics , Mammary Neoplasms, Experimental/genetics , Mammary Neoplasms, Experimental/prevention & control , Mice , Mice, Knockout , Signal Transduction
14.
Cancer Immunol Res ; 3(8): 881-90, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25941352

ABSTRACT

Myeloma remains a virtually incurable malignancy. The inevitable evolution of multidrug-resistant clones and widespread clonal heterogeneity limit the potential of traditional and novel therapies to eliminate minimal residual disease (MRD), a reliable harbinger of relapse. Here, we show potent anti-myeloma activity of macrophage-activating immunotherapy (αCD40+CpG) that resulted in prolongation of progression-free survival (PFS) and overall survival (OS) in an immunocompetent, preclinically validated, transplant-based model of multidrug-resistant, relapsed/refractory myeloma (t-Vκ*MYC). αCD40+CpG was effective in vivo in the absence of cytolytic natural killer, T, or B cells and resulted in expansion of M1-polarized (cytolytic/tumoricidal) macrophages in the bone marrow. Moreover, we show that concurrent loss/inhibition of Tpl2 kinase (Cot, Map3k8), a MAP3K that is recruited to activated CD40 complex and regulates macrophage activation/cytokine production, potentiated direct, ex vivo anti-myeloma tumoricidal activity of αCD40+CpG-activated macrophages, promoted production of antitumor cytokine IL12 in vitro and in vivo, and synergized with αCD40+CpG to further prolong PFS and OS in vivo. Our results support the combination of αCD40-based macrophage activation and TPL2 inhibition for myeloma immunotherapy. We propose that αCD40-mediated activation of innate antitumor immunity may be a promising approach to control/eradicate MRD following cytoreduction with traditional or novel anti-myeloma therapies.


Subject(s)
Cytotoxicity, Immunologic , Macrophage Activation/immunology , Macrophages/immunology , Multiple Myeloma/immunology , Animals , CD40 Antigens/immunology , CD40 Antigens/metabolism , Disease Models, Animal , Gene Knockout Techniques , Humans , Immunotherapy , Killer Cells, Natural/immunology , Killer Cells, Natural/metabolism , MAP Kinase Kinase Kinases/genetics , MAP Kinase Kinase Kinases/metabolism , Macrophages/metabolism , Mice , Multiple Myeloma/genetics , Multiple Myeloma/mortality , Multiple Myeloma/pathology , Multiple Myeloma/therapy , NF-kappa B p50 Subunit/metabolism , Neoplasm Recurrence, Local , Oligodeoxyribonucleotides/immunology , Proto-Oncogene Proteins/genetics , Proto-Oncogene Proteins/metabolism , T-Lymphocyte Subsets/immunology , T-Lymphocyte Subsets/metabolism
15.
Anticancer Res ; 23(3A): 2101-10, 2003.
Article in English | MEDLINE | ID: mdl-12894584

ABSTRACT

HOX transcription factors regulate basic and cell type-specific activities throughout life. The combinatorial patterns of HOX gene expression along anterior-posterior and proximal-distal axes are relatively tightly-defined during embryogenesis and key remnants of such positional memory persist through adulthood. These normal patterns of HOX gene expression can be compared to a growing body of work on their dysregulation during carcinogenesis. In this review, simple and complex changes in HOX gene expression patterns will be considered using examples from hematopoietic, breast and lung cancers. Changes in individual and combinatorial patterns of HOX gene expression, co-factor expression and chromatin structure will be considered in a discussion of potential roles for dysregulated HOX genes in target gene regulation and various aspects of cancer progression. Collectively, studies indicate that, although a variety of factors must be delineated to assess the roles of individual HOX genes in particular cancers, approaches that modulate HOX gene expression and monitor both changes in the regulation of key target genes and cellular activities are making the greatest initial advances in this assessment.


Subject(s)
Breast Neoplasms/genetics , Genes, Homeobox/physiology , Hematologic Neoplasms/genetics , Lung Neoplasms/genetics , Animals , Breast Neoplasms/metabolism , Gene Expression Regulation, Neoplastic , Hematologic Neoplasms/metabolism , Hematopoiesis/genetics , Homeodomain Proteins/biosynthesis , Homeodomain Proteins/genetics , Humans , Lung Neoplasms/metabolism , Multigene Family
16.
Cancer Res ; 71(13): 4720-31, 2011 Jul 01.
Article in English | MEDLINE | ID: mdl-21555366

ABSTRACT

The growth and survival of tumor cells in an unfavorable hypoxic environment depend upon their adaptability. Here, we show that both normal and tumor cells expressing the protein kinase Akt2 are more resistant to hypoxia than cells expressing Akt1 or Akt3. This is due to the differential regulation of microRNA (miR) 21, which is upregulated by hypoxia only in Akt2-expressing cells. By upregulating miR-21 upon oxygen deprivation, Akt2 downregulates PTEN and activates all three Akt isoforms. miR-21 also targets PDCD4 and Sprouty 1 (Spry1), and the combined downregulation of these proteins with PTEN is sufficient to confer resistance to hypoxia. Furthermore, the miR-21 induction by Akt2 during hypoxia depends upon the binding of NF-κB, cAMP responsive element-binding protein (CREB), and CBP/p300 to the miR-21 promoter, in addition to the regional acetylation of histone H3K9, all of which are under the control of Akt2. Analysis of the Akt2/miR-21 pathway in hypoxic MMTV-PyMT-induced mouse mammary adenocarcinomas and human ovarian carcinomas confirmed the activity of the pathway in vivo. Taken together, this study identifies a novel Akt2-dependent pathway that is activated by hypoxia and promotes tumor resistance via induction of miR-21.


Subject(s)
Adenocarcinoma/metabolism , Mammary Neoplasms, Experimental/metabolism , MicroRNAs/biosynthesis , Ovarian Neoplasms/metabolism , Proto-Oncogene Proteins c-akt/metabolism , Adaptor Proteins, Signal Transducing , Adenocarcinoma/enzymology , Adenocarcinoma/genetics , Animals , Apoptosis Regulatory Proteins/antagonists & inhibitors , Apoptosis Regulatory Proteins/biosynthesis , Cell Hypoxia/physiology , Enzyme Activation , Extracellular Signal-Regulated MAP Kinases/metabolism , Female , Humans , Isoenzymes , Mammary Neoplasms, Experimental/enzymology , Mammary Neoplasms, Experimental/genetics , Membrane Proteins/antagonists & inhibitors , Membrane Proteins/biosynthesis , Mice , MicroRNAs/genetics , Ovarian Neoplasms/enzymology , Ovarian Neoplasms/genetics , Oxygen/metabolism , PTEN Phosphohydrolase/biosynthesis , PTEN Phosphohydrolase/genetics , Phosphoproteins/antagonists & inhibitors , Phosphoproteins/biosynthesis , Proto-Oncogene Proteins c-akt/biosynthesis , RNA-Binding Proteins/antagonists & inhibitors , RNA-Binding Proteins/biosynthesis
17.
Sci Signal ; 2(92): ra62, 2009 Oct 13.
Article in English | MEDLINE | ID: mdl-19825827

ABSTRACT

Although Akt is known to play a role in human cancer, the relative contribution of its three isoforms to oncogenesis remains to be determined. We expressed each isoform individually in an Akt1(-/-)/Akt2(-/-)/Akt3(-/-) cell line. MicroRNA profiling of growth factor-stimulated cells revealed unique microRNA signatures for cells with each isoform. Among the differentially regulated microRNAs, the abundance of the miR-200 family was decreased in cells bearing Akt2. Knockdown of Akt1 in transforming growth factor-beta (TGFbeta)-treated MCF10A cells also decreased the abundance of miR-200; however, knockdown of Akt2, or of both Akt1 and Akt2, did not. Furthermore, Akt1 knockdown in MCF10A cells promoted TGFbeta-induced epithelial-mesenchymal transition (EMT) and a stem cell-like phenotype. Carcinomas developing in MMTV-cErbB2/Akt1(-/-) mice showed increased invasiveness because of miR-200 down-regulation. Finally, the ratio of Akt1 to Akt2 and the abundance of miR-200 and of the messenger RNA encoding E-cadherin in a set of primary and metastatic human breast cancers were consistent with the hypothesis that in many cases breast cancer metastasis may be under the control of the Akt-miR-200-E-cadherin axis. We conclude that induction of EMT is controlled by microRNAs whose abundance depends on the balance between Akt1 and Akt2 rather than on the overall activity of Akt.


Subject(s)
Epithelium/metabolism , Gene Expression Regulation, Neoplastic , Mesoderm/metabolism , MicroRNAs/metabolism , Proto-Oncogene Proteins c-akt/metabolism , Stem Cells/cytology , Animals , Cadherins/metabolism , Carcinoma/metabolism , Cell Line, Tumor , Humans , Mice , Neoplasm Metastasis , Protein Isoforms , Proto-Oncogene Proteins c-akt/chemistry , Transforming Growth Factor beta/metabolism
18.
J Immunol ; 178(9): 5443-53, 2007 May 01.
Article in English | MEDLINE | ID: mdl-17442925

ABSTRACT

Pre-TCR signals regulate the transition of the double-negative (DN) 3 thymocytes to the DN4, and subsequently to the double-positive (DP) stage. In this study, we show that pre-TCR signals activate Akt and that pharmacological inhibition of the PI3K/Akt pathway, or combined ablation of Akt1 and Akt2, and to a lesser extent Akt1 and Akt3, interfere with the differentiation of DN3 and the accumulation of DP thymocytes. Combined ablation of Akt1 and Akt2 inhibits the proliferation of DN4 cells, while combined ablation of all Akt isoforms also inhibits the survival of all the DN thymocytes. Finally, the combined ablation of Akt1 and Akt2 inhibits the survival of DP thymocytes. Constitutively active Lck-Akt1 transgenes had the opposite effects. We conclude that, following their activation by pre-TCR signals, Akt1, Akt2, and, to a lesser extent, Akt3 promote the transition of DN thymocytes to the DP stage, in part by enhancing the proliferation and survival of cells undergoing beta-selection. Akt1 and Akt2 also contribute to the differentiation process by promoting the survival of the DP thymocytes.


Subject(s)
Proto-Oncogene Proteins c-akt/physiology , Receptors, Antigen, T-Cell/immunology , T-Lymphocytes/immunology , Thymus Gland/immunology , Animals , Cell Proliferation , Cell Survival , Gene Expression , Lymphocyte Activation/genetics , Mice , Mice, Knockout , Phosphatidylinositol 3-Kinases/metabolism , Phosphoinositide-3 Kinase Inhibitors , Protein Isoforms/genetics , Protein Isoforms/metabolism , Protein Isoforms/physiology , Proto-Oncogene Proteins c-akt/genetics , Proto-Oncogene Proteins c-akt/metabolism , Thymus Gland/cytology , Transgenes
19.
J Immunol ; 176(2): 1244-51, 2006 Jan 15.
Article in English | MEDLINE | ID: mdl-16394015

ABSTRACT

Helicobacter hepaticus is an enterohepatic Helicobacter species that induces lower bowel inflammation in susceptible mouse strains, including those lacking the p50/p105 subunit of NF-kappaB. H. hepaticus-induced colitis is associated with elevated levels of IL-12 p40 expression, and p50/p105-deficient macrophages express higher levels of IL-12 p40 than wild-type macrophages after challenge with H. hepaticus. However, the molecular mechanisms by which the p50/p105 subunit of NF-kappaB suppresses IL-12 p40 expression have not yet been elucidated. In this study we have demonstrated that H. hepaticus challenge of macrophages induces ERK activation, and this event plays a critical role in inhibiting the ability of H. hepaticus to induce IL-12 p40. Activation of ERK requires both p50/p105 and the MAPK kinase kinase, Tpl-2. Inhibition of the induction of IL-12 p40 by ERK was independent of c-Rel, a known positive regulator of IL-12 p40. Instead, it was linked to the induction of c-Fos, a known inhibitor of IL-12 p40 expression. These results suggest that H. hepaticus induces ERK activation by a pathway dependent upon Tpl-2 and p105, and that activation of ERK inhibits the expression of IL-12 p40 by inducing c-Fos. Thus, a defect in ERK activation could play a pivotal role in the superinduction of IL-12 p40 observed after challenge of macrophages lacking the p50/p105 subunit of NF-kappaB with H. hepaticus.


Subject(s)
Extracellular Signal-Regulated MAP Kinases/metabolism , Helicobacter hepaticus/pathogenicity , Interleukin-12/biosynthesis , Macrophages/immunology , Macrophages/metabolism , NF-kappa B p50 Subunit/deficiency , Protein Subunits/biosynthesis , Animals , Butadienes/pharmacology , Enzyme Activation , Extracellular Signal-Regulated MAP Kinases/antagonists & inhibitors , Helicobacter hepaticus/immunology , In Vitro Techniques , Interleukin-10/biosynthesis , Interleukin-10/deficiency , Interleukin-10/genetics , Interleukin-12 Subunit p40 , MAP Kinase Signaling System/drug effects , Macrophages/drug effects , Macrophages/microbiology , Mice , Mice, Inbred C57BL , Mice, Knockout , NF-kappa B p50 Subunit/genetics , Nitriles/pharmacology , Protein Kinase Inhibitors/pharmacology , Proto-Oncogene Proteins c-fos/biosynthesis
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