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1.

Dietary tryptophan metabolite released by intratumoral Lactobacillus reuteri facilitates immune checkpoint inhibitor treatment.

Bender, Mackenzie J; McPherson, Alex C; Phelps, Catherine M; Pandey, Surya P; Laughlin, Colin R; Shapira, Jake H; Medina Sanchez, Luzmariel; Rana, Mohit; Richie, Tanner G; Mims, Tahliyah S; Gocher-Demske, Angela M; Cervantes-Barragan, Luisa; Mullett, Steven J; Gelhaus, Stacy L; Bruno, Tullia C; Cannon, Nikki; McCulloch, John A; Vignali, Dario A A; Hinterleitner, Reinhard; Joglekar, Alok V; Pierre, Joseph F; Lee, Sonny T M; Davar, Diwakar; Zarour, Hassane M; Meisel, Marlies.

Cell ; 186(9): 1846-1862.e26, 2023 04 27.

Article in English | MEDLINE | ID: mdl-37028428

2.

Infection trains the host for microbiota-enhanced resistance to pathogens.

Stacy, Apollo; Andrade-Oliveira, Vinicius; McCulloch, John A; Hild, Benedikt; Oh, Ji Hoon; Perez-Chaparro, P Juliana; Sim, Choon K; Lim, Ai Ing; Link, Verena M; Enamorado, Michel; Trinchieri, Giorgio; Segre, Julia A; Rehermann, Barbara; Belkaid, Yasmine.

Cell ; 184(3): 615-627.e17, 2021 02 04.

Article in English | MEDLINE | ID: mdl-33453153

3.

Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance.

Rosshart, Stephan P; Vassallo, Brian G; Angeletti, Davide; Hutchinson, Diane S; Morgan, Andrew P; Takeda, Kazuyo; Hickman, Heather D; McCulloch, John A; Badger, Jonathan H; Ajami, Nadim J; Trinchieri, Giorgio; Pardo-Manuel de Villena, Fernando; Yewdell, Jonathan W; Rehermann, Barbara.

Cell ; 171(5): 1015-1028.e13, 2017 Nov 16.

Article in English | MEDLINE | ID: mdl-29056339

4.

An Interleukin-23-Interleukin-22 Axis Regulates Intestinal Microbial Homeostasis to Protect from Diet-Induced Atherosclerosis.

Fatkhullina, Aliia R; Peshkova, Iuliia O; Dzutsev, Amiran; Aghayev, Turan; McCulloch, John A; Thovarai, Vishal; Badger, Jonathan H; Vats, Ravi; Sundd, Prithu; Tang, Hsin-Yao; Kossenkov, Andrew V; Hazen, Stanley L; Trinchieri, Giorgio; Grivennikov, Sergei I; Koltsova, Ekaterina K.

Immunity ; 49(5): 943-957.e9, 2018 11 20.

Article in English | MEDLINE | ID: mdl-30389414

5.

Gut microbiota composition is associated with newborn functional brain connectivity and behavioral temperament.

Kelsey, Caroline M; Prescott, Stephanie; McCulloch, John A; Trinchieri, Giorgio; Valladares, Tara L; Dreisbach, Caitlin; Alhusen, Jeanne; Grossmann, Tobias.

Brain Behav Immun ; 91: 472-486, 2021 01.

Article in English | MEDLINE | ID: mdl-33157257

6.

First Report of the Globally Disseminated IncX4 Plasmid Carrying the mcr-1 Gene in a Colistin-Resistant Escherichia coli Sequence Type 101 Isolate from a Human Infection in Brazil.

Fernandes, Miriam R; McCulloch, John A; Vianello, Marco A; Moura, Quézia; Pérez-Chaparro, Paula J; Esposito, Fernanda; Sartori, Luciana; Dropa, Milena; Matté, Maria H; Lira, Débora P A; Mamizuka, Elsa M; Lincopan, Nilton.

Antimicrob Agents Chemother ; 60(10): 6415-7, 2016 10.

Article in English | MEDLINE | ID: mdl-27503650

7.

Deep phenotyping of post-infectious myalgic encephalomyelitis/chronic fatigue syndrome.

Walitt, Brian; Singh, Komudi; LaMunion, Samuel R; Hallett, Mark; Jacobson, Steve; Chen, Kong; Enose-Akahata, Yoshimi; Apps, Richard; Barb, Jennifer J; Bedard, Patrick; Brychta, Robert J; Buckley, Ashura Williams; Burbelo, Peter D; Calco, Brice; Cathay, Brianna; Chen, Li; Chigurupati, Snigdha; Chen, Jinguo; Cheung, Foo; Chin, Lisa M K; Coleman, Benjamin W; Courville, Amber B; Deming, Madeleine S; Drinkard, Bart; Feng, Li Rebekah; Ferrucci, Luigi; Gabel, Scott A; Gavin, Angelique; Goldstein, David S; Hassanzadeh, Shahin; Horan, Sean C; Horovitz, Silvina G; Johnson, Kory R; Govan, Anita Jones; Knutson, Kristine M; Kreskow, Joy D; Levin, Mark; Lyons, Jonathan J; Madian, Nicholas; Malik, Nasir; Mammen, Andrew L; McCulloch, John A; McGurrin, Patrick M; Milner, Joshua D; Moaddel, Ruin; Mueller, Geoffrey A; Mukherjee, Amrita; Muñoz-Braceras, Sandra; Norato, Gina; Pak, Katherine.

Nat Commun ; 15(1): 907, 2024 Feb 21.

Article in English | MEDLINE | ID: mdl-38383456

8.

Escherichia coli carrying IncX4 plasmid-mediated mcr-1 and blaCTX-M genes in infected migratory Magellanic penguins (Spheniscus magellanicus).

Sellera, Fábio P; Fernandes, Miriam R; Sartori, Luciana; Carvalho, Marcelo P N; Esposito, Fernanda; Nascimento, Cristiane L; Dutra, Gustavo H P; Mamizuka, Elsa M; Pérez-Chaparro, Paula J; McCulloch, John A; Lincopan, Nilton.

J Antimicrob Chemother ; 72(4): 1255-1256, 2017 04 01.

Article in English | MEDLINE | ID: mdl-28031274

9.

Predicting cancer immunotherapy response from gut microbiomes using machine learning models.

Liang, Hai; Jo, Jay-Hyun; Zhang, Zhiwei; MacGibeny, Margaret A; Han, Jungmin; Proctor, Diana M; Taylor, Monica E; Che, You; Juneau, Paul; Apolo, Andrea B; McCulloch, John A; Davar, Diwakar; Zarour, Hassane M; Dzutsev, Amiran K; Brownell, Isaac; Trinchieri, Giorgio; Gulley, James L; Kong, Heidi H.

Oncotarget ; 13: 876-889, 2022.

Article in English | MEDLINE | ID: mdl-35875611

10.

Intestinal microbiota signatures of clinical response and immune-related adverse events in melanoma patients treated with anti-PD-1.

McCulloch, John A; Davar, Diwakar; Rodrigues, Richard R; Badger, Jonathan H; Fang, Jennifer R; Cole, Alicia M; Balaji, Ascharya K; Vetizou, Marie; Prescott, Stephanie M; Fernandes, Miriam R; Costa, Raquel G F; Yuan, Wuxing; Salcedo, Rosalba; Bahadiroglu, Erol; Roy, Soumen; DeBlasio, Richelle N; Morrison, Robert M; Chauvin, Joe-Marc; Ding, Quanquan; Zidi, Bochra; Lowin, Ava; Chakka, Saranya; Gao, Wentao; Pagliano, Ornella; Ernst, Scarlett J; Rose, Amy; Newman, Nolan K; Morgun, Andrey; Zarour, Hassane M; Trinchieri, Giorgio; Dzutsev, Amiran K.

Nat Med ; 28(3): 545-556, 2022 03.

Article in English | MEDLINE | ID: mdl-35228752

11.

A singular value decomposition approach for improved taxonomic classification of biological sequences.

Santos, Anderson R; Santos, Marcos A; Baumbach, Jan; McCulloch, John A; Oliveira, Guilherme C; Silva, Artur; Miyoshi, Anderson; Azevedo, Vasco.

BMC Genomics ; 12 Suppl 4: S11, 2011 Dec 22.

Article in English | MEDLINE | ID: mdl-22369633

12.

Microbial diversity of an anoxic zone of a hydroelectric power station reservoir in Brazilian Amazonia.

Graças, Diego A; Miranda, Paulo R; Baraúna, Rafael A; McCulloch, John A; Ghilardi, Rubens; Schneider, Maria Paula C; Silva, Artur.

Microb Ecol ; 62(4): 853-61, 2011 Nov.

Article in English | MEDLINE | ID: mdl-21755290

13.

Gut bacteria enable prostate cancer growth.

McCulloch, John A; Trinchieri, Giorgio.

Science ; 374(6564): 154-155, 2021 Oct 08.

Article in English | MEDLINE | ID: mdl-34618567

14.

Neonatal exposure to a wild-derived microbiome protects mice against diet-induced obesity.

Hild, Benedikt; Dreier, Matthew S; Oh, Ji Hoon; McCulloch, John A; Badger, Jonathan H; Guo, Juen; Thefaine, Claire E; Umarova, Regina; Hall, Kevin D; Gavrilova, Oksana; Rosshart, Stephan P; Trinchieri, Giorgio; Rehermann, Barbara.

Nat Metab ; 3(8): 1042-1057, 2021 08.

Article in English | MEDLINE | ID: mdl-34417593

15.

Fecal microbiota transplant overcomes resistance to anti-PD-1 therapy in melanoma patients.

Davar, Diwakar; Dzutsev, Amiran K; McCulloch, John A; Rodrigues, Richard R; Chauvin, Joe-Marc; Morrison, Robert M; Deblasio, Richelle N; Menna, Carmine; Ding, Quanquan; Pagliano, Ornella; Zidi, Bochra; Zhang, Shuowen; Badger, Jonathan H; Vetizou, Marie; Cole, Alicia M; Fernandes, Miriam R; Prescott, Stephanie; Costa, Raquel G F; Balaji, Ascharya K; Morgun, Andrey; Vujkovic-Cvijin, Ivan; Wang, Hong; Borhani, Amir A; Schwartz, Marc B; Dubner, Howard M; Ernst, Scarlett J; Rose, Amy; Najjar, Yana G; Belkaid, Yasmine; Kirkwood, John M; Trinchieri, Giorgio; Zarour, Hassane M.

Science ; 371(6529): 595-602, 2021 02 05.

Article in English | MEDLINE | ID: mdl-33542131

16.

Dietary fiber and probiotics influence the gut microbiome and melanoma immunotherapy response.

Spencer, Christine N; McQuade, Jennifer L; Gopalakrishnan, Vancheswaran; McCulloch, John A; Vetizou, Marie; Cogdill, Alexandria P; Khan, Md A Wadud; Zhang, Xiaotao; White, Michael G; Peterson, Christine B; Wong, Matthew C; Morad, Golnaz; Rodgers, Theresa; Badger, Jonathan H; Helmink, Beth A; Andrews, Miles C; Rodrigues, Richard R; Morgun, Andrey; Kim, Young S; Roszik, Jason; Hoffman, Kristi L; Zheng, Jiali; Zhou, Yifan; Medik, Yusra B; Kahn, Laura M; Johnson, Sarah; Hudgens, Courtney W; Wani, Khalida; Gaudreau, Pierre-Olivier; Harris, Angela L; Jamal, Mohamed A; Baruch, Erez N; Perez-Guijarro, Eva; Day, Chi-Ping; Merlino, Glenn; Pazdrak, Barbara; Lochmann, Brooke S; Szczepaniak-Sloane, Robert A; Arora, Reetakshi; Anderson, Jaime; Zobniw, Chrystia M; Posada, Eliza; Sirmans, Elizabeth; Simon, Julie; Haydu, Lauren E; Burton, Elizabeth M; Wang, Linghua; Dang, Minghao; Clise-Dwyer, Karen; Schneider, Sarah.

Science ; 374(6575): 1632-1640, 2021 Dec 24.

Article in English | MEDLINE | ID: mdl-34941392

17.

Isolation of KPC-2-producing Klebsiella pneumoniae strains belonging to the high-risk multiresistant clonal complex 11 (ST437 and ST340) in urban rivers.

Oliveira, Silvane; Moura, Rodrigo A; Silva, Ketrin C; Pavez, Mónica; McCulloch, John A; Dropa, Milena; Matté, Maria H; Mamizuka, Elsa M; Sato, Maria I Z; Pestana de Castro, Antonio F; Lincopan, Nilton.

J Antimicrob Chemother ; 69(3): 849-52, 2014 Mar.

Article in English | MEDLINE | ID: mdl-24159156

18.

Correlation between Disease Severity and the Intestinal Microbiome in Mycobacterium tuberculosis-Infected Rhesus Macaques.

Namasivayam, Sivaranjani; Kauffman, Keith D; McCulloch, John A; Yuan, Wuxing; Thovarai, Vishal; Mittereder, Lara R; Trinchieri, Giorgio; Barber, Daniel L; Sher, Alan.

mBio ; 10(3)2019 06 04.

Article in English | MEDLINE | ID: mdl-31164469

19.

Laboratory mice born to wild mice have natural microbiota and model human immune responses.

Rosshart, Stephan P; Herz, Jasmin; Vassallo, Brian G; Hunter, Ashli; Wall, Morgan K; Badger, Jonathan H; McCulloch, John A; Anastasakis, Dimitrios G; Sarshad, Aishe A; Leonardi, Irina; Collins, Nicholas; Blatter, Joshua A; Han, Seong-Ji; Tamoutounour, Samira; Potapova, Svetlana; Foster St Claire, Mark B; Yuan, Wuxing; Sen, Shurjo K; Dreier, Matthew S; Hild, Benedikt; Hafner, Markus; Wang, David; Iliev, Iliyan D; Belkaid, Yasmine; Trinchieri, Giorgio; Rehermann, Barbara.

Science ; 365(6452)2019 08 02.

Article in English | MEDLINE | ID: mdl-31371577

20.

Gut microbiome-mediated bile acid metabolism regulates liver cancer via NKT cells.

Ma, Chi; Han, Miaojun; Heinrich, Bernd; Fu, Qiong; Zhang, Qianfei; Sandhu, Milan; Agdashian, David; Terabe, Masaki; Berzofsky, Jay A; Fako, Valerie; Ritz, Thomas; Longerich, Thomas; Theriot, Casey M; McCulloch, John A; Roy, Soumen; Yuan, Wuxing; Thovarai, Vishal; Sen, Shurjo K; Ruchirawat, Mathuros; Korangy, Firouzeh; Wang, Xin Wei; Trinchieri, Giorgio; Greten, Tim F.

Science ; 360(6391)2018 05 25.

Article in English | MEDLINE | ID: mdl-29798856

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