Search details
1.
A region of suppressed recombination misleads neoavian phylogenomics.
Proc Natl Acad Sci U S A
; 121(15): e2319506121, 2024 Apr 09.
Article
in English
| MEDLINE | ID: mdl-38557186
2.
CONSULT-II: accurate taxonomic identification and profiling using locality-sensitive hashing.
Bioinformatics
; 40(4)2024 Mar 29.
Article
in English
| MEDLINE | ID: mdl-38492564
3.
Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approach.
Bioinformatics
; 40(6)2024 Jun 03.
Article
in English
| MEDLINE | ID: mdl-38870525
4.
Phylogenomic branch length estimation using quartets.
Bioinformatics
; 39(39 Suppl 1): i185-i193, 2023 06 30.
Article
in English
| MEDLINE | ID: mdl-37387151
5.
Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates.
Bioinformatics
; 39(1)2023 01 01.
Article
in English
| MEDLINE | ID: mdl-36637196
6.
DEPP: Deep Learning Enables Extending Species Trees using Single Genes.
Syst Biol
; 72(1): 17-34, 2023 05 19.
Article
in English
| MEDLINE | ID: mdl-35485976
7.
Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees.
Mol Biol Evol
; 39(12)2022 12 05.
Article
in English
| MEDLINE | ID: mdl-36201617
8.
QuCo: quartet-based co-estimation of species trees and gene trees.
Bioinformatics
; 38(Suppl 1): i413-i421, 2022 06 24.
Article
in English
| MEDLINE | ID: mdl-35758818
9.
Completing gene trees without species trees in sub-quadratic time.
Bioinformatics
; 38(6): 1532-1541, 2022 03 04.
Article
in English
| MEDLINE | ID: mdl-34978565
10.
ASTRAL-Pro 2: ultrafast species tree reconstruction from multi-copy gene family trees.
Bioinformatics
; 38(21): 4949-4950, 2022 10 31.
Article
in English
| MEDLINE | ID: mdl-36094339
11.
A communal catalogue reveals Earth's multiscale microbial diversity.
Nature
; 551(7681): 457-463, 2017 11 23.
Article
in English
| MEDLINE | ID: mdl-29088705
12.
Log Transformation Improves Dating of Phylogenies.
Mol Biol Evol
; 38(3): 1151-1167, 2021 03 09.
Article
in English
| MEDLINE | ID: mdl-32886788
13.
SODA: multi-locus species delimitation using quartet frequencies.
Bioinformatics
; 36(24): 5623-5631, 2021 Apr 05.
Article
in English
| MEDLINE | ID: mdl-33555318
14.
Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT.
PLoS Comput Biol
; 17(11): e1009449, 2021 11.
Article
in English
| MEDLINE | ID: mdl-34780468
15.
ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy.
Mol Biol Evol
; 37(11): 3292-3307, 2020 11 01.
Article
in English
| MEDLINE | ID: mdl-32886770
16.
Identifying the favored mutation in a positive selective sweep.
Nat Methods
; 15(4): 279-282, 2018 04.
Article
in English
| MEDLINE | ID: mdl-29457793
17.
Phylogenetic double placement of mixed samples.
Bioinformatics
; 36(Suppl_1): i335-i343, 2020 07 01.
Article
in English
| MEDLINE | ID: mdl-32657414
18.
INSTRAL: Discordance-Aware Phylogenetic Placement Using Quartet Scores.
Syst Biol
; 69(2): 384-391, 2020 03 01.
Article
in English
| MEDLINE | ID: mdl-31290974
19.
APPLES: Scalable Distance-Based Phylogenetic Placement with or without Alignments.
Syst Biol
; 69(3): 566-578, 2020 05 01.
Article
in English
| MEDLINE | ID: mdl-31545363
20.
Forcing external constraints on tree inference using ASTRAL.
BMC Genomics
; 21(Suppl 2): 218, 2020 Apr 16.
Article
in English
| MEDLINE | ID: mdl-32299337