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1.
Cell ; 2024 Jun 28.
Article in English | MEDLINE | ID: mdl-39013469

ABSTRACT

Vesicle trafficking is a fundamental process that allows for the sorting and transport of specific proteins (i.e., "cargoes") to different compartments of eukaryotic cells. Cargo recognition primarily occurs through coats and the associated proteins at the donor membrane. However, it remains unclear whether cargoes can also be selected at other stages of vesicle trafficking to further enhance the fidelity of the process. The WDR11-FAM91A1 complex functions downstream of the clathrin-associated AP-1 complex to facilitate protein transport from endosomes to the TGN. Here, we report the cryo-EM structure of human WDR11-FAM91A1 complex. WDR11 directly and specifically recognizes a subset of acidic clusters, which we term super acidic clusters (SACs). WDR11 complex assembly and its binding to SAC-containing proteins are indispensable for the trafficking of SAC-containing proteins and proper neuronal development in zebrafish. Our studies thus uncover that cargo proteins could be recognized in a sequence-specific manner downstream of a protein coat.

2.
Proc Natl Acad Sci U S A ; 118(36)2021 09 07.
Article in English | MEDLINE | ID: mdl-34462354

ABSTRACT

The molecular events that determine the recycling versus degradation fates of internalized membrane proteins remain poorly understood. Two of the three members of the SNX-FERM family, SNX17 and SNX31, utilize their FERM domain to mediate endocytic trafficking of cargo proteins harboring the NPxY/NxxY motif. In contrast, SNX27 does not recycle NPxY/NxxY-containing cargo but instead recycles cargo containing PDZ-binding motifs via its PDZ domain. The underlying mechanism governing this divergence in FERM domain binding is poorly understood. Here, we report that the FERM domain of SNX27 is functionally distinct from SNX17 and interacts with a novel DLF motif localized within the N terminus of SNX1/2 instead of the NPxY/NxxY motif in cargo proteins. The SNX27-FERM-SNX1 complex structure reveals that the DLF motif of SNX1 binds to a hydrophobic cave surrounded by positively charged residues on the surface of SNX27. The interaction between SNX27 and SNX1/2 is critical for efficient SNX27 recruitment to endosomes and endocytic recycling of multiple cargoes. Finally, we show that the interaction between SNX27 and SNX1/2 is critical for brain development in zebrafish. Altogether, our study solves a long-standing puzzle in the field and suggests that SNX27 and SNX17 mediate endocytic recycling through fundamentally distinct mechanisms.


Subject(s)
Brain/growth & development , FERM Domains , Sorting Nexins/metabolism , Animals , Brain/metabolism , Endocytosis , Glucose Transporter Type 1/metabolism , Humans , Neurons/cytology , Protein Binding , Protein Transport , Receptor Activator of Nuclear Factor-kappa B/metabolism , Sorting Nexins/chemistry , Zebrafish/growth & development , Zebrafish/metabolism
3.
Anal Chem ; 95(37): 13762-13768, 2023 09 19.
Article in English | MEDLINE | ID: mdl-37661353

ABSTRACT

Imaging and tracking tools for natural cellular RNA with improved biocompatibility, specificity, and sensitivity are critical to understanding RNA function and providing insights into disease therapeutics. We developed a new genetically encoded sensor using fluorogenic allosteric aptamer (FaApt) for the sensitive imaging of the localization and dynamics of RNA targets in live cells. Target RNAs can be specifically recognized with our sensor by forming perfectly complementary duplexes, which in turn can induce allosteric structural changes of the sensor to refold the native conformation of fluorogenic RNA aptamers. We demonstrated the ability of the sensor to monitor the effect of tumor necrosis factor and small-molecule inhibitor on the expression abundance of CXCL1 and survivin mRNA in human cancer cells, respectively. The asymmetrical distribution of endogenous Squint mRNA was confirmed in developing zebrafish embryos through microinjection of FaApt probes. This study provides an effective molecular tool for sensitive imaging and tracking endogenous RNA in living cells. Due to the high specificity and small size of our sensor system, it is expected to be applied to early diagnosis of RNA marker-related diseases and real-time evaluation of the treatment process.


Subject(s)
Aptamers, Nucleotide , RNA , Humans , Animals , RNA/genetics , Zebrafish/genetics , RNA, Messenger , Aptamers, Nucleotide/genetics , Diagnostic Imaging
4.
PLoS Biol ; 18(5): e3000746, 2020 05.
Article in English | MEDLINE | ID: mdl-32453802

ABSTRACT

Members of the Tre2-Bub2-Cdc16 (TBC) family often function to regulate membrane trafficking and to control signaling transductions pathways. As a member of the TBC family, TBC1D23 is critical for endosome-to-Golgi cargo trafficking by serving as a bridge between Golgi-bound golgin-97/245 and the WASH/FAM21 complex on endosomal vesicles. However, the exact mechanisms by which TBC1D23 regulates cargo transport are poorly understood. Here, we present the crystal structure of the N-terminus of TBC1D23 (D23N), which consists of both the TBC and rhodanese domains. We show that the rhodanese domain is unlikely to be an active sulfurtransferase or phosphatase, despite containing a putative catalytic site. Instead, it packs against the TBC domain and forms part of the platform to interact with golgin-97/245. Using the zebrafish model, we show that impacting golgin-97/245-binding, but not the putative catalytic site, impairs neuronal growth and brain development. Altogether, our studies provide structural and functional insights into an essential protein that is required for organelle-specific trafficking and brain development.


Subject(s)
Autoantigens/metabolism , Brain/embryology , GTPase-Activating Proteins/metabolism , Golgi Matrix Proteins/metabolism , Thiosulfate Sulfurtransferase/metabolism , ADP-Ribosylation Factors/metabolism , Animals , Escherichia coli , GTPase-Activating Proteins/chemistry , GTPase-Activating Proteins/isolation & purification , HEK293 Cells , HeLa Cells , Humans , Membrane Proteins/metabolism , Protein Conformation , Protein Domains , Zebrafish
5.
Proc Natl Acad Sci U S A ; 117(12): 6559-6570, 2020 03 24.
Article in English | MEDLINE | ID: mdl-32156735

ABSTRACT

Secretagogin (SCGN) is a hexa-EF-hand protein that is highly expressed in the pancreas, brain, and gastrointestinal tract. SCGN is known to modulate regulated exocytosis in multiple cell lines and tissues; however, its exact functions and underlying mechanisms remain unclear. Here, we report that SCGN interacts with the plasma membrane SNARE SNAP-25, but not the assembled SNARE complex, in a Ca2+-dependent manner. The crystal structure of SCGN in complex with a SNAP-25 fragment reveals that SNAP-25 adopts a helical structure and binds to EF-hands 5 and 6 of SCGN. SCGN strongly inhibits SNARE-mediated vesicle fusion in vitro by binding to SNAP-25. SCGN promotes the plasma membrane localization of SNAP-25, but not Syntaxin-1a, in SCGN-expressing cells. Finally, SCGN controls neuronal growth and brain development in zebrafish, likely via interacting with SNAP-25 or its close homolog, SNAP-23. Our results thus provide insights into the regulation of SNAREs and suggest that aberrant synapse functions underlie multiple neurological disorders caused by SCGN deficiency.


Subject(s)
Exocytosis , Secretagogins/chemistry , Secretagogins/metabolism , Animals , Binding Sites , Brain/growth & development , Brain/metabolism , Calcium/metabolism , Cell Line , Cell Membrane/metabolism , Gene Expression Regulation, Developmental , Humans , Mutation , Protein Binding , Protein Conformation , Secretagogins/genetics , Synaptosomal-Associated Protein 25/genetics , Synaptosomal-Associated Protein 25/metabolism , Zebrafish
6.
Genome Res ; 2019 Dec 12.
Article in English | MEDLINE | ID: mdl-31831591

ABSTRACT

Genome editing by the well-established CRISPR/Cas9 technology has greatly facilitated our understanding of many biological processes. However, a complete whole-genome knockout for any species or model organism has rarely been achieved. Here, we performed a systematic knockout of all the genes (1333) on Chromosome 1 in zebrafish, successfully mutated 1029 genes, and generated 1039 germline-transmissible alleles corresponding to 636 genes. Meanwhile, by high-throughput bioinformatics analysis, we found that sequence features play pivotal roles in effective gRNA targeting at specific genes of interest, while the success rate of gene targeting positively correlates with GC content of the target sites. Moreover, we found that nearly one-fourth of all mutants are related to human diseases, and several representative CRISPR/Cas9-generated mutants are described here. Furthermore, we tried to identify the underlying mechanisms leading to distinct phenotypes between genetic mutants and antisense morpholino-mediated knockdown embryos. Altogether, this work has generated the first chromosome-wide collection of zebrafish genetic mutants by the CRISPR/Cas9 technology, which will serve as a valuable resource for the community, and our bioinformatics analysis also provides some useful guidance to design gene-specific gRNAs for successful gene editing.

7.
Cancer Cell Int ; 22(1): 158, 2022 Apr 19.
Article in English | MEDLINE | ID: mdl-35440048

ABSTRACT

BACKGROUND: Several nervous and nerve-related biomarkers have been detected in colorectal cancer (CRC) and can contribute to the progression of CRC. However, the role of leucine-rich repeat neuronal 4 (LRRN4), a recently identified neurogenic marker, in CRC remains unclear. METHODS: We examined the expression and clinical outcomes of LRRN4 in CRC from TCGA-COREAD mRNA-sequencing datasets and immunohistochemistry in a Chinese cohort. Furthermore, colony formation, flow cytometry, wound healing assays and mouse xenograft models were used to investigate the biological significance of LRRN4 in CRC cell lines with LRRN4 knockdown or overexpression in vitro and in vivo. In addition, weighted coexpression network analysis, DAVID and western blot analysis were used to explore the potential molecular mechanism. RESULTS: We provide the first evidence that LRRN4 expression, at both the mRNA and protein levels, was remarkably high in CRC compared to controls and positively correlated with the clinical outcome of CRC patients. Specifically, LRRN4 was an independent prognostic factor for progression-free survival and overall survival in CRC patients. Further functional experiments showed that LRRN4 promoted cell proliferation, cell DNA synthesis and cell migration and inhibited apoptosis. Knockdown of LRRN4 can correspondingly decrease these effects in vitro and can significantly suppress the growth of xenografts. Several biological functions and signaling pathways were regulated by LRRN4, including proteoglycans in cancer, glutamatergic synapse, Ras, MAPK and PI3K. LRRN4 knockdown resulted in downregulation of Akt, p-Akt, ERK1/2 and p-ERK1/2, the downstream of the Ras/MAPK signaling pathway, overexpression of LRRN4 leaded to the upregulation of these proteins. CONCLUSIONS: Our results suggest that LRRN4 could be a biological and molecular determinant to stratify CRC patients into distinct risk categories, and mechanistically, this is likely attributable to LRRN4 regulating several malignant phenotypes of neoplastic cells via RAS/MAPK signal pathways.

8.
Proc Natl Acad Sci U S A ; 116(45): 22598-22608, 2019 11 05.
Article in English | MEDLINE | ID: mdl-31624125

ABSTRACT

Pontocerebellar hypoplasia (PCH) is a group of neurological disorders that affect the development of the brain, in particular, the pons and cerebellum. Homozygous mutations of TBC1D23 have been found recently to lead to PCH; however, the underlying molecular mechanisms remain unclear. Here, we show that the crystal structure of the TBC1D23 C-terminal domain adopts a Pleckstrin homology domain fold and selectively binds to phosphoinositides, in particular, PtdIns(4)P, through one surface while binding FAM21 via the opposite surface. Mutation of key residues of TBC1D23 or FAM21 selectively disrupts the endosomal vesicular trafficking toward the Trans-Golgi Network. Finally, using the zebrafish model, we show that PCH patient-derived mutants, impacting either phosphoinositide binding or FAM21 binding, lead to abnormal neuronal growth and brain development. Taken together, our data provide a molecular basis for the interaction between TBC1D23 and FAM21, and suggest a plausible role for PtdIns(4)P in the TBC1D23-mediating endosome-to-TGN trafficking pathway. Defects in this trafficking pathway are, at least partially, responsible for the pathogenesis of certain types of PCH.


Subject(s)
Cerebellar Diseases/metabolism , Endosomes/metabolism , GTPase-Activating Proteins/chemistry , GTPase-Activating Proteins/metabolism , Animals , Cerebellar Diseases/genetics , Endosomes/genetics , GTPase-Activating Proteins/genetics , HeLa Cells , Humans , Mutation , Phosphate-Binding Proteins/chemistry , Phosphate-Binding Proteins/genetics , Phosphate-Binding Proteins/metabolism , Protein Binding , Protein Domains , Protein Transport , Zebrafish , trans-Golgi Network/genetics , trans-Golgi Network/metabolism
9.
Biomed Eng Online ; 20(1): 22, 2021 Feb 17.
Article in English | MEDLINE | ID: mdl-33596908

ABSTRACT

BACKGROUND: The detection and dissection of epidermal subgroups could lead to an improved understanding of skin homeostasis and wound healing. Flow cytometric analysis provides an effective method to detect the surface markers of epidermal cells while producing high-dimensional data files. METHODS: A 9-color flow cytometric panel was optimized to reveal the heterogeneous subgroups in the epidermis of human skin. The subsets of epidermal cells were characterized using automated methods based on dimensional reduction approaches (viSNE) and clustering with Spanning-tree Progression Analysis of Density-normalized Events (SPADE). RESULTS: The manual analysis revealed differences in epidermal distribution between body sites based on a series biaxial gating starting with the expression of CD49f and CD29. The computational analysis divided the whole epidermal cell population into 25 clusters according to the surface marker phenotype with SPADE. This automatic analysis delineated the differences between body sites. The consistency of the results was confirmed with PhenoGraph. CONCLUSION: A multicolor flow cytometry panel with a streamlined computational analysis pipeline is a feasible approach to delineate the heterogeneity of the epidermis in human skin.


Subject(s)
Epidermis/physiology , Flow Cytometry/methods , Skin/cytology , Algorithms , Cluster Analysis , Color , Computer Simulation , Humans , Machine Learning , Pattern Recognition, Automated , Phenotype , Software
10.
Nucleic Acids Res ; 47(5): 2514-2522, 2019 03 18.
Article in English | MEDLINE | ID: mdl-30649474

ABSTRACT

Hammerhead ribozyme is the smallest and best characterized catalytic RNA-cleaving ribozyme. It has been reported as potential therapeutic tools to manipulate the expression of target genes. However, most of naturally occurring hammerhead ribozymes process self-cleavage rather than cleave substrate RNA in trans, and its high intracellular activity relies on the tertiary interaction of Loop II and steam I bulge, resulting in decreased performance as applied in gene silencing. We described a direct intracellular selection method to evolve hammerhead variants based on trans-cleavage mode via using a toxin gene as the reporter. And a dual fluorescence proteins system has also been established to quantitatively evaluate the efficiency of selected ribozymes in the cell. Based on this selection strategy, we obtained three mutants with enhanced intracellular cleaving activity compared to wide type hammerhead ribozyme. The best one, TX-2 was revealed to possess better and consistent gene knockdown ability at different positions on diverse targeted mRNA either in prokaryotic or eukaryotic cells than wild-type hammerhead ribozyme. These observations imply the efficiency of the intracellular selection method of the trans-acting ribozyme and the potentials of improved ribozyme variants for research and therapeutic purposes.


Subject(s)
Nucleic Acid Conformation , RNA, Catalytic/genetics , RNA, Messenger/genetics , RNA/genetics , Eukaryotic Cells/metabolism , Gene Expression Regulation , Gene Knockdown Techniques , Gene Silencing , Prokaryotic Cells/metabolism , RNA/chemistry , RNA, Catalytic/chemistry , RNA, Catalytic/metabolism
11.
Future Oncol ; 15(18): 2093-2106, 2019 Jun.
Article in English | MEDLINE | ID: mdl-31257922

ABSTRACT

Aim: To investigate the association and prognostic value of ANKZF1 gene for survival in colorectal cancer, the mechanism of ANKZF1 level alteration and correlated signaling pathways ANKZF1 is involved. Patients & methods: The Cancer Genome Atlas COREAD dataset was analyzed by bioinformatical investigation. Results: High ANKZF1 expression is associated with poor overall survival (hazard ratio [HR]: 2.094; 95% CI: 1.188-3.689; p = 0.011) and recurrence-free survival (HR: 1.762; 95% CI: 1.021-3.042; p = 0.042) in colon cancer. Bioinformatical analysis showed ANKZF1 was upregulated by amplification and exon expression. ANKZF1 was associated with angiogenesis and cancer signaling pathways. Conclusion: High ANKZF1 is an independent factor of poor survival (overall survival and recurrence-free survival) in colon cancer by taking part in angiogenesis and some cancer signaling pathways.


Subject(s)
Biomarkers, Tumor , Carrier Proteins/genetics , Colonic Neoplasms/genetics , Colonic Neoplasms/mortality , Gene Expression , Adult , Aged , Aged, 80 and over , Colonic Neoplasms/pathology , Colonic Neoplasms/therapy , Computational Biology/methods , Female , High-Throughput Nucleotide Sequencing , Humans , Kaplan-Meier Estimate , Male , Microsatellite Instability , Middle Aged , Neoplasm Grading , Neoplasm Staging , Prognosis , Survival Analysis
12.
Cancer Sci ; 109(7): 2243-2255, 2018 Jul.
Article in English | MEDLINE | ID: mdl-29791764

ABSTRACT

Angiogenesis and inflammation are crucial processes through which the tumor microenvironment (TME) influences tumor progression. In this study, we showed that peroxisome proliferator-activated receptor γ (PPARγ) is not only expressed in CT26 and 4T1 tumor cell lines but also in cells of TME, including endothelial cells and tumor-associated macrophages (TAM). In addition, we showed that rosiglitazone may induce tumor vessel normalization and reduce TAM infiltration. Additionally, 4T1 and CT26 tumor-bearing mice treated with rosiglitazone in combination with radiotherapy showed a significant reduction in lesion size and lung metastasis. We reported that a single dose of 12 Gy irradiation strongly inhibits local tumor angiogenesis. Secretion of C-C motif chemokine ligand 2 (CCL2) in response to local irradiation facilitates the recruitment of migrating CD11b+ myeloid monocytes and TAM to irradiated sites that initiate vasculogenesis and enable tumor recurrence after radiotherapy. We found that rosiglitazone partially decreases CCL2 secretion by tumor cells and reduces the infiltration of CD11b+ myeloid monocytes and TAM to irradiated tumors, thereby delaying tumor regrowth after radiotherapy. Therefore, combination of the PPARγ agonist rosiglitazone with radiotherapy enhances the effectiveness of radiotherapy to improve local tumor control, decrease distant metastasis risks and delay tumor recurrence.


Subject(s)
Chemoradiotherapy/methods , Neoplasms, Experimental/therapy , PPAR gamma/agonists , PPAR gamma/biosynthesis , Thiazolidinediones/pharmacology , Animals , Mice , Mice, Inbred BALB C , Neoplasms, Experimental/pathology , Neovascularization, Pathologic/pathology , Rosiglitazone , Tumor Microenvironment/drug effects , Tumor Microenvironment/radiation effects
13.
Mol Ther ; 25(5): 1168-1186, 2017 05 03.
Article in English | MEDLINE | ID: mdl-28366764

ABSTRACT

CRISPR-associated protein 9 (Cas9)-mediated genome editing provides a promising cure for HIV-1/AIDS; however, gene delivery efficiency in vivo remains an obstacle to overcome. Here, we demonstrate the feasibility and efficiency of excising the HIV-1 provirus in three different animal models using an all-in-one adeno-associated virus (AAV) vector to deliver multiplex single-guide RNAs (sgRNAs) plus Staphylococcus aureus Cas9 (saCas9). The quadruplex sgRNAs/saCas9 vector outperformed the duplex vector in excising the integrated HIV-1 genome in cultured neural stem/progenitor cells from HIV-1 Tg26 transgenic mice. Intravenously injected quadruplex sgRNAs/saCas9 AAV-DJ/8 excised HIV-1 proviral DNA and significantly reduced viral RNA expression in several organs/tissues of Tg26 mice. In EcoHIV acutely infected mice, intravenously injected quadruplex sgRNAs/saCas9 AAV-DJ/8 reduced systemic EcoHIV infection, as determined by live bioluminescence imaging. Additionally, this quadruplex vector induced efficient proviral excision, as determined by PCR genotyping in the liver, lungs, brain, and spleen. Finally, in humanized bone marrow/liver/thymus (BLT) mice with chronic HIV-1 infection, successful proviral excision was detected by PCR genotyping in the spleen, lungs, heart, colon, and brain after a single intravenous injection of quadruplex sgRNAs/saCas9 AAV-DJ/8. In conclusion, in vivo excision of HIV-1 proviral DNA by sgRNAs/saCas9 in solid tissues/organs can be achieved via AAV delivery, a significant step toward human clinical trials.


Subject(s)
Endonucleases/genetics , Genetic Therapy/methods , Genome, Viral , HIV Infections/therapy , HIV-1/genetics , Proviruses/genetics , RNA, Guide, Kinetoplastida/genetics , Animals , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Base Sequence , CRISPR-Cas Systems , Clustered Regularly Interspaced Short Palindromic Repeats , Dependovirus/genetics , Dependovirus/metabolism , Disease Models, Animal , Endonucleases/metabolism , Gene Editing/methods , Genetic Vectors/chemistry , Genetic Vectors/metabolism , HIV Infections/pathology , HIV Infections/virology , HIV Long Terminal Repeat , HIV-1/metabolism , Humans , Mice , Mice, Transgenic , Oligonucleotides/genetics , Oligonucleotides/metabolism , Proviruses/metabolism , RNA, Guide, Kinetoplastida/metabolism , Staphylococcus aureus/chemistry , Staphylococcus aureus/enzymology , gag Gene Products, Human Immunodeficiency Virus/genetics , gag Gene Products, Human Immunodeficiency Virus/metabolism , pol Gene Products, Human Immunodeficiency Virus/genetics , pol Gene Products, Human Immunodeficiency Virus/metabolism
14.
Cancer Sci ; 108(7): 1357-1367, 2017 Jul.
Article in English | MEDLINE | ID: mdl-28421697

ABSTRACT

Tumor growth depends on the formation of blood vessels that provide the supply of nutrients and oxygen. Previous data have shown that glioblastoma stem cells are able to give rise to vascular cells to constitute the functional vessels in tumor tissues. However, which kinds of vascular cells are generated from glioblastoma stem cells is largely debated. In addition, there is little evidence showing that the stem cells from other kinds of tumors can produce vascular cells to constitute the functional blood vessels in tumor tissues. Here we show that cancer stem cells of human colorectal carcinomas (CoCSC) can give rise to vascular endothelial cells and compose the vasculatures in cancer tissues. The human-cell-specific nuclear antigen NuMA+ vascular endothelial cells were detected in the blood vessels in xenografts derived from CoCSC. NuMA+ endothelial cells incorporated into functional blood vessels. Our data indicate that the cancer stem cells derived from human colorectal carcinomas have the capacity to generate functional blood vessels and provide a new mechanism for tumor vasculogenesis in carcinoma.


Subject(s)
Colorectal Neoplasms/pathology , Endothelium, Vascular/pathology , Neoplastic Stem Cells/pathology , Neovascularization, Pathologic/pathology , Animals , Cell Differentiation , Female , Fluorescent Antibody Technique , Heterografts , Humans , Male , Mice , Mice, Inbred BALB C , Mice, Nude , Reverse Transcriptase Polymerase Chain Reaction
15.
Development ; 141(22): 4332-42, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25371367

ABSTRACT

Recently, emerging evidence has shown that Stat3 controls tumor cell migration and invasion. However, the molecular mechanisms by which Stat3 controls the cell movement remain largely unknown. Embryonic gastrula progenitors display coordinated and orientated migration, called collective cell migration. Collective cell migration is the simultaneous movement of multiple cells and is universally involved in physiological and pathological programs. Stat3 activity is required for the migration of gastrula progenitors, but it does not affect cell specification, thus suggesting that gastrula movements are an excellent model to provide insight into Stat3 control of cell migration in vivo. In this study, we reveal a novel mechanism by which Stat3 modulates extracellular matrix (ECM) assembly to control the coherence of collective migration of prechordal plate progenitors during zebrafish embryonic gastrulation. We show that Stat3 regulates the expression of Efemp2a in the prechordal plate progenitors that migrate anteriorly during gastrulation. Alteration of Stat3-Efemp2a signaling activity disrupted the configuration of fibronectin (FN) and laminin (LM) matrices, resulting in defective coherence of prechordal plate progenitor movements in zebrafish embryos. We demonstrate that Efemp2a acts as a downstream effector of Stat3 to promote ECM configuration for coherent collective cell migrations in vivo.


Subject(s)
Cell Movement/physiology , Endoderm/cytology , Extracellular Matrix Proteins/metabolism , Extracellular Matrix/physiology , Gastrulation/physiology , STAT3 Transcription Factor/metabolism , Stem Cells/physiology , Zebrafish Proteins/metabolism , Zebrafish/embryology , Adenoviridae , Animals , Chromatin Immunoprecipitation , Cloning, Molecular , DNA Primers/genetics , Dogs , Extracellular Matrix Proteins/genetics , Fluorescent Antibody Technique , Gene Knockdown Techniques , HeLa Cells , Human Umbilical Vein Endothelial Cells , Humans , Immunoblotting , Immunoprecipitation , In Situ Hybridization , Madin Darby Canine Kidney Cells , Morpholinos/genetics , Mutagenesis , STAT3 Transcription Factor/genetics , Time-Lapse Imaging , Zebrafish/genetics , Zebrafish Proteins/genetics
16.
Proc Natl Acad Sci U S A ; 111(31): 11461-6, 2014 Aug 05.
Article in English | MEDLINE | ID: mdl-25049410

ABSTRACT

AIDS remains incurable due to the permanent integration of HIV-1 into the host genome, imparting risk of viral reactivation even after antiretroviral therapy. New strategies are needed to ablate the viral genome from latently infected cells, because current methods are too inefficient and prone to adverse off-target effects. To eliminate the integrated HIV-1 genome, we used the Cas9/guide RNA (gRNA) system, in single and multiplex configurations. We identified highly specific targets within the HIV-1 LTR U3 region that were efficiently edited by Cas9/gRNA, inactivating viral gene expression and replication in latently infected microglial, promonocytic, and T cells. Cas9/gRNAs caused neither genotoxicity nor off-target editing to the host cells, and completely excised a 9,709-bp fragment of integrated proviral DNA that spanned from its 5' to 3' LTRs. Furthermore, the presence of multiplex gRNAs within Cas9-expressing cells prevented HIV-1 infection. Our results suggest that Cas9/gRNA can be engineered to provide a specific, efficacious prophylactic and therapeutic approach against AIDS.


Subject(s)
HIV Infections/prevention & control , HIV Infections/virology , HIV-1/genetics , RNA Editing/genetics , RNA/genetics , Virus Latency/genetics , Base Sequence , Cell Line , Clustered Regularly Interspaced Short Palindromic Repeats/genetics , Genome, Human/genetics , HEK293 Cells , HIV Infections/immunology , HIV Long Terminal Repeat/genetics , Humans , Molecular Sequence Data , Vaccination , RNA, Small Untranslated
17.
Cell Physiol Biochem ; 39(6): 2439-2450, 2016.
Article in English | MEDLINE | ID: mdl-27832642

ABSTRACT

BACKGROUND/AIMS: The aim of this study was to assess the association between circulating cell-derived microparticles (MPs) and type 2 diabetes mellitus (T2DM). METHODS: A literature search was performed systematically in PubMed and Embase to identify available case-control or cross-sectional studies that compared different types of cell-derived MPs in patients with T2DM and non-diabetic controls. Pooled standardized mean differences (SMDs) of each MP type were pooled using meta-analysis. RESULTS: Forty-eight studies involving 2,460 patients with T2DM and 1,880 non-diabetic controls were included for systematic review and 34 of which were included for quantitative study by meta-analysis. In the overall analysis, the levels of circulating total MPs (TMPs), platelet-derived MPs (PMPs), monocyte-derived MPs (MMPs) and endothelium-derived MPs (EMPs) were significantly higher in T2DM patients than those in controls (TMPs: SMD, 0.64; 95%CI, 0.12∼1.15; P=0.02; PMPs: SMD, 1.19; 95%CI, 0.88∼1.50; P <0.00001; MMPs: SMD, 0.92; 95%CI, 0.66∼1.17; P <0.00001; EMPs: SMD, 0.73; 95%CI, 0.50∼0.96; P <0.00001). Meanwhile, no significant difference was shown in leukocyte-derived MPs (LMPs) level between diabetic and non-diabetic groups (SMD, 0.37; 95%CI, -0.15∼0.89; P=0.17). CONCLUSIONS: The counts of TMPs, PMPs, MMPs and EMPs elevated in patients with T2DM. And cell-derived MPs may play a role in the pathogenesis of T2DM.


Subject(s)
Cell-Derived Microparticles/metabolism , Diabetes Mellitus, Type 2/metabolism , Case-Control Studies , Humans , Publication Bias , Regression Analysis
18.
Dev Biol ; 374(1): 85-95, 2013 Feb 01.
Article in English | MEDLINE | ID: mdl-23201577

ABSTRACT

The left-right asymmetry is an essential feature shared by vertebrates. Cilia-driven counterclockwise flow in the mammalian node structure leads to the left-right asymmetric distribution of signals and subsequent asymmetric patterning. Although several signaling pathways have been identified in the specification of node ciliated cells, little is known about the direct downstream effectors of these signaling pathways. Here, we showed that zebrafish Ectoderm-Neural Cortex1-like (enc1l) is expressed in the Kupffer's Vesicle (KV), an equivalent structure of the mammalian node in zebrafish, and is necessary for KV ciliogenesis. Loss-of-function of enc1l increased the number and decreased the length of KV cilia. The enc1l expression in the KV region was specifically regulated by retinoic acid (RA), FGF, and Wnt signaling pathways. In addition, knocking down enc1l or ectopic enc1l expression was able to rescue the KV cilium defects caused by alteration of RA and FGF signaling, but not Wnt signaling. Taken together, these data indicate thatEnc1l is a direct downstream effector of RA and FGF signaling pathways and modulates KV ciliogenesis in the zebrafish embryo.


Subject(s)
Fibroblast Growth Factors/metabolism , Gene Expression Regulation, Developmental , Microfilament Proteins/genetics , Microfilament Proteins/physiology , Neuropeptides/genetics , Neuropeptides/physiology , Nuclear Proteins/genetics , Nuclear Proteins/physiology , Signal Transduction , Tretinoin/metabolism , Animals , Body Patterning , Cilia/metabolism , In Situ Hybridization , Models, Biological , RNA, Messenger/metabolism , Time Factors , Tissue Distribution , Wnt Proteins/metabolism , Zebrafish
19.
Mol Ther ; 21(2): 456-65, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23299797

ABSTRACT

Radiation-induced lung injury (RILI) presents a common and major obstacle in the radiotherapy of thoracic cancers. The aim of this study was to examine whether RILI could be alleviated by mesenchymal stem cells (MSCs) expressing soluble transforming growth factor-ß (TGF-ß) type II receptor via an adenovirus (Ad-sTßR). Here, we systemically administered male MSCs into female mice challenged with thoracic irradiation. The data showed that either MSCs or Ad-sTßR transduced MSCs (Ad-sTßR-MSCs) specifically migrated into radiation-injured lung. Ad-sTßR-MSCs obviously alleviated lung injury, as reflected by survival and histopathology data, as well as the assays of malondialdehyde (MDA), hydroxyproline, plasma cytokines, and the expression of connective tissue growth factor (CTGF) and α-smooth muscle actin (α-SMA). Furthermore, MSCs and Ad-sTßR-MSCs could adopt the characteristics of alveolar type II (ATII) cells. However, the MSCs levels in the lungs were relatively low to account for the noted therapeutic effects, suggesting the presence of other mechanisms. In vivo, MSCs-conditioned medium (MSCs CM) significantly attenuated RILI. In vitro, MSCs CM protected ATII cells against radiation-induced apoptosis and DNA damage, and modulated the inflammatory response, indicating the beneficial effects of MSCs are largely due to its paracrine activity. Our results provide a novel insight for RILI therapy that currently lack efficient treatments.


Subject(s)
Lung/radiation effects , Mesenchymal Stem Cells/cytology , Radiation Pneumonitis/pathology , Radiation Pneumonitis/therapy , Actins/genetics , Actins/metabolism , Adenoviridae/genetics , Animals , Apoptosis , Connective Tissue Growth Factor/genetics , Connective Tissue Growth Factor/metabolism , Cytokines/blood , DNA Damage , Female , Genetic Vectors , Hydroxyproline/blood , Lung/pathology , Male , Malondialdehyde/blood , Mesenchymal Stem Cell Transplantation/methods , Mesenchymal Stem Cells/metabolism , Mice , Paracrine Communication , Phenotype , Protein Serine-Threonine Kinases/genetics , Protein Serine-Threonine Kinases/metabolism , Receptor, Transforming Growth Factor-beta Type II , Receptors, Transforming Growth Factor beta/genetics , Receptors, Transforming Growth Factor beta/metabolism , Transforming Growth Factor beta1/genetics , Transforming Growth Factor beta1/metabolism
20.
Hepatogastroenterology ; 61(134): 1817-21, 2014 Sep.
Article in English | MEDLINE | ID: mdl-25436385

ABSTRACT

BACKGROUND/AIMS: The aim of this study was to investigate the association of human epidermal growth factor receptor 2 (HER2) expression with clinicopathological characteristics of resectable gastric cancer patients. METHODOLOGY: A total of 394 stage I-III surgical gastric cancer patients who were detected of immunohistochemical (IHC) HER2 expression postoperatively were included in this retrospective study. Association of IHC HER2 over-expression (3+) rate with clinicopathological characteristics was tested by univariate and multivariate analyses. RESULTS: IHC HER2 over-expression rate was 5.1% (95% CI 3.1%-7.7%). By univariate analyses, none of the clinicopathological characteristics was associated with the IHC HER2 over-expression compared to negative expression (0/1+) (p>0.05), with the exception of a higher rate (12.2%) of IHC HER2 (3+) in moderate differentiation subset (p=0.02). However, the multivariate analyses didn't selected any characteristic as an independent risk factor of IHC HER2 over-expression or the combination of IHC HER2 (2/3+). CONCLUSIONS: IHC HER2 over-expression rate is relatively low among stage I-III gastric cancer patients, and might be generally not associated with clinicopathological characteristics.


Subject(s)
Biomarkers, Tumor/analysis , Immunohistochemistry , Receptor, ErbB-2/analysis , Stomach Neoplasms/enzymology , Adult , Aged , Aged, 80 and over , Chi-Square Distribution , Female , Humans , Logistic Models , Male , Middle Aged , Multivariate Analysis , Neoplasm Staging , Odds Ratio , Predictive Value of Tests , Retrospective Studies , Risk Factors , Stomach Neoplasms/pathology , Stomach Neoplasms/surgery , Up-Regulation
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