Search details
1.
Improving quartet graph construction for scalable and accurate species tree estimation from gene trees.
Genome Res
; 33(7): 1042-1052, 2023 07.
Article
in English
| MEDLINE | ID: mdl-37197990
2.
Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models.
Genome Res
; 33(7): 1089-1100, 2023 07.
Article
in English
| MEDLINE | ID: mdl-37316351
3.
Inferring population structure in biobank-scale genomic data.
Am J Hum Genet
; 109(4): 727-737, 2022 04 07.
Article
in English
| MEDLINE | ID: mdl-35298920
4.
Genetic and behavioral differences between above and below ground Culex pipiens bioforms.
Heredity (Edinb)
; 132(5): 221-231, 2024 May.
Article
in English
| MEDLINE | ID: mdl-38424351
5.
Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation.
BMC Genomics
; 24(1): 165, 2023 Apr 04.
Article
in English
| MEDLINE | ID: mdl-37016310
6.
Theoretical and Practical Considerations when using Retroelement Insertions to Estimate Species Trees in the Anomaly Zone.
Syst Biol
; 71(3): 721-740, 2022 04 19.
Article
in English
| MEDLINE | ID: mdl-34677617
7.
Advancing admixture graph estimation via maximum likelihood network orientation.
Bioinformatics
; 37(Suppl_1): i142-i150, 2021 07 12.
Article
in English
| MEDLINE | ID: mdl-34252951
8.
TIPP2: metagenomic taxonomic profiling using phylogenetic markers.
Bioinformatics
; 37(13): 1839-1845, 2021 Jul 27.
Article
in English
| MEDLINE | ID: mdl-33471121
9.
ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy.
Mol Biol Evol
; 37(11): 3292-3307, 2020 11 01.
Article
in English
| MEDLINE | ID: mdl-32886770
10.
FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models.
Bioinformatics
; 36(Suppl_1): i57-i65, 2020 07 01.
Article
in English
| MEDLINE | ID: mdl-32657396
11.
Correction to: The performance of coalescent-based species tree estimation methods under models of missing data.
BMC Genomics
; 21(1): 133, 2020 02 10.
Article
in English
| MEDLINE | ID: mdl-32039710
12.
TreeMerge: a new method for improving the scalability of species tree estimation methods.
Bioinformatics
; 35(14): i417-i426, 2019 07 15.
Article
in English
| MEDLINE | ID: mdl-31510668
13.
ILS-Aware Analysis of Low-Homoplasy Retroelement Insertions: Inference of Species Trees and Introgression Using Quartets.
J Hered
; 111(2): 147-168, 2020 04 02.
Article
in English
| MEDLINE | ID: mdl-31837265
14.
To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
Syst Biol
; 67(2): 285-303, 2018 Mar 01.
Article
in English
| MEDLINE | ID: mdl-29029338
15.
The performance of coalescent-based species tree estimation methods under models of missing data.
BMC Genomics
; 19(Suppl 5): 286, 2018 May 08.
Article
in English
| MEDLINE | ID: mdl-29745854
16.
A brief assessment tool for investigating facets of moral judgment from realistic vignettes.
Behav Res Methods
; 50(3): 922-936, 2018 06.
Article
in English
| MEDLINE | ID: mdl-28646400
17.
Corrigendum to: ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy.
Mol Biol Evol
; 38(10): 4655, 2021 Sep 27.
Article
in English
| MEDLINE | ID: mdl-34417619
18.
The influence of spatial resolution and smoothing on the detectability of resting-state and task fMRI.
Neuroimage
; 86: 221-30, 2014 Feb 01.
Article
in English
| MEDLINE | ID: mdl-24021836
19.
Dollo-CDP: a polynomial-time algorithm for the clade-constrained large Dollo parsimony problem.
Algorithms Mol Biol
; 19(1): 2, 2024 Jan 08.
Article
in English
| MEDLINE | ID: mdl-38191515
20.
Stochastic modelling of single-cell gene expression adaptation reveals non-genomic contribution to evolution of tumor subclones.
bioRxiv
; 2024 Apr 20.
Article
in English
| MEDLINE | ID: mdl-38712152