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1.

The Chinese pine genome and methylome unveil key features of conifer evolution.

Niu, Shihui; Li, Jiang; Bo, Wenhao; Yang, Weifei; Zuccolo, Andrea; Giacomello, Stefania; Chen, Xi; Han, Fangxu; Yang, Junhe; Song, Yitong; Nie, Yumeng; Zhou, Biao; Wang, Peiyi; Zuo, Quan; Zhang, Hui; Ma, Jingjing; Wang, Jun; Wang, Lvji; Zhu, Qianya; Zhao, Huanhuan; Liu, Zhanmin; Zhang, Xuemei; Liu, Tao; Pei, Surui; Li, Zhimin; Hu, Yao; Yang, Yehui; Li, Wenzhao; Zan, Yanjun; Zhou, Linghua; Lin, Jinxing; Yuan, Tongqi; Li, Wei; Li, Yue; Wei, Hairong; Wu, Harry X.

Cell ; 185(1): 204-217.e14, 2022 01 06.

Article in English | MEDLINE | ID: mdl-34965378

2.

PagARGOS promotes low-lignin wood formation in poplar.

Yao, Xiaomin; Zhang, Guifang; Zhang, Geng; Sun, Qian; Liu, Cuimei; Chu, Jinfang; Jing, Yanping; Niu, Shihui; Fu, Chunxiang; Lew, Tedrick Thomas Salim; Lin, Jinxing; Li, Xiaojuan.

Plant Biotechnol J ; 2024 Mar 16.

Article in English | MEDLINE | ID: mdl-38492213

3.

Epigenetic regulation and epigenetic memory resetting during plant rejuvenation.

Liu, Jie; Ke, Meng; Sun, Yuhan; Niu, Shihui; Zhang, Wenli; Li, Yun.

J Exp Bot ; 75(3): 733-745, 2024 Feb 02.

Article in English | MEDLINE | ID: mdl-37930766

4.

The JASMONATE ZIM-domain-OPEN STOMATA1 cascade integrates jasmonic acid and abscisic acid signaling to regulate drought tolerance by mediating stomatal closure in poplar.

Rao, Shupei; Tian, Yuru; Zhang, Chong; Qin, Yingzhi; Liu, Meiqin; Niu, Shihui; Li, Yue; Chen, Jinhuan.

J Exp Bot ; 74(1): 443-457, 2023 01 01.

Article in English | MEDLINE | ID: mdl-36260345

5.

Genome-wide TCP transcription factors analysis provides insight into their new functions in seasonal and diurnal growth rhythm in Pinus tabuliformis.

Nie, Yu-Meng; Han, Fang-Xu; Ma, Jing-Jing; Chen, Xi; Song, Yi-Tong; Niu, Shi-Hui; Wu, Harry X.

BMC Plant Biol ; 22(1): 167, 2022 Apr 02.

Article in English | MEDLINE | ID: mdl-35366809

6.

MADS-box transcription factors MADS11 and DAL1 interact to mediate the vegetative-to-reproductive transition in pine.

Ma, Jing-Jing; Chen, Xi; Song, Yi-Tong; Zhang, Gui-Fang; Zhou, Xian-Qing; Que, Shu-Peng; Mao, Fei; Pervaiz, Tariq; Lin, Jin-Xing; Li, Yue; Li, Wei; Wu, Harry X; Niu, Shi-Hui.

Plant Physiol ; 187(1): 247-262, 2021 09 04.

Article in English | MEDLINE | ID: mdl-34618133

7.

Gibberellin Signaling Is Required for Far-Red Light-Induced Shoot Elongation in Pinus tabuliformis Seedlings.

Li, Wei; Liu, Shuang-Wei; Ma, Jing-Jing; Liu, Hong-Mei; Han, Fang-Xu; Li, Yue; Niu, Shi-Hui.

Plant Physiol ; 182(1): 658-668, 2020 01.

Article in English | MEDLINE | ID: mdl-31659126

8.

Transcriptome-wide isolation and expression of NF-Y gene family in male cone development and hormonal treatment of Pinus tabuliformis.

Guo, Yingtian; Niu, Shihui; El-Kassaby, Yousry A; Li, Wei.

Physiol Plant ; 171(1): 34-47, 2021 Jan.

Article in English | MEDLINE | ID: mdl-32770551

9.

The Transcriptional Landscape and Hub Genes Associated with Physiological Responses to Drought Stress in Pinus tabuliformis.

Pervaiz, Tariq; Liu, Shuang-Wei; Uddin, Saleem; Amjid, Muhammad Waqas; Niu, Shi-Hui; Wu, Harry X.

Int J Mol Sci ; 22(17)2021 Sep 04.

Article in English | MEDLINE | ID: mdl-34502511

10.

Comparative transcriptome analyses reveal two distinct transcriptional modules associated with pollen shedding time in pine.

Ma, Jing-Jing; Liu, Shuang-Wei; Han, Fang-Xu; Li, Wei; Li, Yue; Niu, Shi-Hui.

BMC Genomics ; 21(1): 504, 2020 Jul 22.

Article in English | MEDLINE | ID: mdl-32698817

11.

Chinese pine (Pinus tabuliformis Carr.).

Niu, Shihui; Li, Wei; Li, Yue.

Trends Genet ; 38(4): 409-411, 2022 04.

Article in English | MEDLINE | ID: mdl-35181165

12.

A transcriptomics investigation into pine reproductive organ development.

Niu, Shihui; Yuan, Huwei; Sun, Xinrui; Porth, Ilga; Li, Yue; El-Kassaby, Yousry A; Li, Wei.

New Phytol ; 209(3): 1278-89, 2016 Feb.

Article in English | MEDLINE | ID: mdl-26406997

13.

Identification and expression profiles of sRNAs and their biogenesis and action-related genes in male and female cones of Pinus tabuliformis.

Niu, Shi-Hui; Liu, Chang; Yuan, Hu-Wei; Li, Pei; Li, Yue; Li, Wei.

BMC Genomics ; 16: 693, 2015 Sep 15.

Article in English | MEDLINE | ID: mdl-26369937

14.

Isolation and expression profiles of gibberellin metabolism genes in developing male and female cones of Pinus tabuliformis.

Niu, Shihui; Yuan, Lu; Zhang, Yuncheng; Chen, Xiaoyang; Li, Wei.

Funct Integr Genomics ; 14(4): 697-705, 2014 Dec.

Article in English | MEDLINE | ID: mdl-25091154

15.

Genome-wide identification of the Pinus tabuliformis CONSTANS-like gene family and their potential roles in reproductive cone development.

Yang, Wenbin; Zhou, Chengcheng; Guo, Yingtian; Niu, Shihui; El-Kassaby, Yousry A; Li, Wei.

Int J Biol Macromol ; 254(Pt 1): 127621, 2024 Jan.

Article in English | MEDLINE | ID: mdl-37890750

16.

Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny.

Niu, Shi-Hui; Li, Zhe-Xin; Yuan, Hu-Wei; Chen, Xiao-Yang; Li, Yue; Li, Wei.

BMC Genomics ; 14: 263, 2013 Apr 18.

Article in English | MEDLINE | ID: mdl-23597112

17.

Proper gibberellin localization in vascular tissue is required to regulate adventitious root development in tobacco.

Niu, Shihui; Li, Zhexin; Yuan, Huwei; Fang, Pan; Chen, Xiaoyang; Li, Wei.

J Exp Bot ; 64(11): 3411-24, 2013 Aug.

Article in English | MEDLINE | ID: mdl-23918971

18.

Genome-wide identification of late embryogenesis abundant protein family and their key regulatory network in Pinus tabuliformis cold acclimation.

Zhou, Chengcheng; Niu, Shihui; El-Kassaby, Yousry A; Li, Wei.

Tree Physiol ; 43(11): 1964-1985, 2023 11 13.

Article in English | MEDLINE | ID: mdl-37565812

19.

An ethylene-induced NAC transcription factor acts as a multiple abiotic stress responsor in conifer.

Han, Fangxu; Wang, Peiyi; Chen, Xi; Zhao, Huanhuan; Zhu, Qianya; Song, Yitong; Nie, Yumeng; Li, Yue; Guo, Meina; Niu, Shihui.

Hortic Res ; 10(8): uhad130, 2023 Aug.

Article in English | MEDLINE | ID: mdl-37560016

20.

The methylation landscape of giga-genome and the epigenetic timer of age in Chinese pine.

Li, Jiang; Han, Fangxu; Yuan, Tongqi; Li, Wei; Li, Yue; Wu, Harry X; Wei, Hairong; Niu, Shihui.

Nat Commun ; 14(1): 1947, 2023 04 07.

Article in English | MEDLINE | ID: mdl-37029142

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