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1.
PLoS Comput Biol ; 9(8): e1003189, 2013.
Article in English | MEDLINE | ID: mdl-23990767

ABSTRACT

Gene expression analysis is generally performed on heterogeneous tissue samples consisting of multiple cell types. Current methods developed to separate heterogeneous gene expression rely on prior knowledge of the cell-type composition and/or signatures--these are not available in most public datasets. We present a novel method to identify the cell-type composition, signatures and proportions per sample without need for a-priori information. The method was successfully tested on controlled and semi-controlled datasets and performed as accurately as current methods that do require additional information. As such, this method enables the analysis of cell-type specific gene expression using existing large pools of publically available microarray datasets.


Subject(s)
Algorithms , Computational Biology/methods , Gene Expression Profiling/methods , Oligonucleotide Array Sequence Analysis/methods , Organ Specificity/physiology , Animals , Brain/metabolism , Cluster Analysis , Databases, Genetic , Humans , Liver/metabolism , Monocytes/metabolism , Myocardium/metabolism , Rats
2.
Biosensors (Basel) ; 14(5)2024 Apr 28.
Article in English | MEDLINE | ID: mdl-38785694

ABSTRACT

Detecting low concentrations of biomarkers is essential in clinical laboratories. To improve analytical sensitivity, especially in identifying fluorescently labeled molecules, typical optical detection systems, consisting of a photodetector or camera, utilize time-resolved measurements. Taking a different approach, magnetic modulation biosensing (MMB) is a novel technology that combines fluorescently labeled probes and magnetic particles to create a sandwich assay with the target molecules. By concentrating the target molecules and then using time-resolved measurements, MMB provides the rapid and highly sensitive detection of various biomarkers. Here, we propose a novel signal-processing algorithm that enhances the detection and estimation of target molecules at low concentrations. By incorporating both temporally and spatially resolved measurements using human interleukin-8 as a target molecule, we show that the new algorithm provides a 2-4-fold improvement in the limit of detection and an ~25% gain in quantitative resolution.


Subject(s)
Biosensing Techniques , Immunoassay/methods , Humans , Algorithms , Fluorescence , Interleukin-8/analysis , Limit of Detection , Biomarkers/analysis
3.
J Appl Psychol ; 101(12): 1721-1729, 2016 Dec.
Article in English | MEDLINE | ID: mdl-27537675

ABSTRACT

Promotion decisions focus primarily on the successes of those selected, with surprisingly little attention given to the outcomes of those rejected. Negative emotional reactions among rejected candidates, for example, may motivate retaliations against the organization in the form of counterproductive work behaviors (CWBs). Indeed, in a sample of 568 military officer training candidates, we found a greater incidence of CWB among rejected versus accepted candidates, which peaked within 6 months after promotion decisions were made (d = .44) and gradually decreased thereafter. We also found that overt integrity moderated the relationship between promotion decisions and CWB, whereby rejected candidates with high levels of integrity engaged in less CWB than did rejected candidates with low integrity. Practical implications for mitigating CWB in cases of nonpromotion and considerations for more accurately evaluating the utility of promotion decisions are discussed. (PsycINFO Database Record


Subject(s)
Employment/psychology , Military Personnel/psychology , Morals , Social Behavior , Staff Development , Adult , Female , Humans , Male , Young Adult
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