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1.
PLoS Pathog ; 4(4): e1000047, 2008 Apr 18.
Article in English | MEDLINE | ID: mdl-18421377

ABSTRACT

A small focus of hemorrhagic fever (HF) cases occurred near Cochabamba, Bolivia, in December 2003 and January 2004. Specimens were available from only one fatal case, which had a clinical course that included fever, headache, arthralgia, myalgia, and vomiting with subsequent deterioration and multiple hemorrhagic signs. A non-cytopathic virus was isolated from two of the patient serum samples, and identified as an arenavirus by IFA staining with a rabbit polyvalent antiserum raised against South American arenaviruses known to be associated with HF (Guanarito, Machupo, and Sabiá). RT-PCR analysis and subsequent analysis of the complete virus S and L RNA segment sequences identified the virus as a member of the New World Clade B arenaviruses, which includes all the pathogenic South American arenaviruses. The virus was shown to be most closely related to Sabiá virus, but with 26% and 30% nucleotide difference in the S and L segments, and 26%, 28%, 15% and 22% amino acid differences for the L, Z, N, and GP proteins, respectively, indicating the virus represents a newly discovered arenavirus, for which we propose the name Chapare virus. In conclusion, two different arenaviruses, Machupo and Chapare, can be associated with severe HF cases in Bolivia.


Subject(s)
Arenaviruses, New World/isolation & purification , Hemorrhagic Fever, American/virology , Adult , Arenaviruses, New World/classification , Arenaviruses, New World/genetics , Bolivia , Cluster Analysis , Diagnosis, Differential , Fatal Outcome , Genome, Viral , Hemorrhagic Fever, American/diagnosis , Humans , Male , Phylogeny , RNA, Viral/genetics , Sequence Analysis , Sequence Homology, Amino Acid , Severe Dengue/diagnosis , Viral Proteins , Yellow Fever/diagnosis
2.
Ann N Y Acad Sci ; 1063: 337-42, 2005 Dec.
Article in English | MEDLINE | ID: mdl-16481537

ABSTRACT

Phylogenetic analysis of five rickettsial genes (17-kDa gene, gltA, ompB, ompA, and sca4) from two molecular isolates of Candidatus Rickettsia andeanae from two ticks (Amblyomma maculatum and Ixodes boliviensis) collected from two domestic horses living in two separate locations in northern Peru (Coletas and Naranjo) was conducted to more clearly characterize this recently reported novel spotted fever group (SFG) rickettsia. Following nested polymerase chain reaction (PCR) amplification of the 17-kDa gene, gltA, ompB, ompA, and sca4, amplicons were purified, sequenced, and compared to those downloaded from GenBank. Phylogenetic analyses of the Candidatus Rickettsia andeanae sequences generated from 17-kDa gene (483 bp), gltA (1185 bp), ompA (1598 bp), ompB (4839 bp), and sca4 (2634 bp) demonstrated that they aligned strongly with those of SFG rickettsiae. Moreover, the sequences of these five genes most closely aligned with the following rickettsiae: ompA: Rickettsia sp RpA4 (98.03%), R. sp DnS28 (97.90%), and R. rhipicephali and R. massiliae (97.11%); ompB: R. aeschlimannii (97.22%), R. rhipicephali (97.20%), and R. sp Bar 29 (97.10%); and sca4: R. massiliae (97.8%), R. rhipicephali, and R. slovaca (97.7%). These results from the additional phylogenetic analyses of Candidatus Rickettsia andeanae confirm its inclusion within, and distance and uniqueness from, other known SFG rickettsiae.


Subject(s)
Phylogeny , Rickettsia/genetics , Rickettsia/isolation & purification , Ticks/microbiology , Animals , Bacterial Outer Membrane Proteins/genetics , Genes, Bacterial , Horses/parasitology , Molecular Weight , Peru , Rickettsia/classification
3.
Am J Trop Med Hyg ; 72(4): 495-500, 2005 Apr.
Article in English | MEDLINE | ID: mdl-15827294

ABSTRACT

A cohort study involving 60 human immunodeficiency virus (HIV)-negative male transvestite commercial sex workers (CSWs) was conducted in Montevideo, Uruguay in 1999-2001. Serum samples were tested for HIV by an enzyme-linked immunosorbent assay screening with immunoblot confirmation. Six participants seroconverted for an incidence-density rate of 6.03 (95% confidence interval = 2.21-13.12) per 100 person-years. Inconsistent condom use during client sex (adjusted hazard ratio [AHR] = 6.7), during oral sex (AHR = 5.6), and at the last sexual encounter (AHR = 7.8), and use of marihuana (AHR = 5.4) were marginally associated with HIV seroconversion. Five samples were genotyped in the protease and reverse transcriptase regions; three were subtypes B and two were BF recombinants. Full genome analysis of four samples confirmed all three subtype B samples and one of the two BF recombinants. Male transvestite CSWs sustained a high rate of HIV infection. Larger prospective studies are required to better define subtypes and associated sexual and drug-related risk factors.


Subject(s)
HIV Infections/epidemiology , HIV-1/classification , Phylogeny , Sex Work , Adolescent , Adult , Base Sequence , Cohort Studies , DNA Primers , Enzyme-Linked Immunosorbent Assay , HIV Infections/virology , HIV-1/genetics , Humans , Incidence , Risk Factors , Uruguay/epidemiology
4.
Am J Trop Med Hyg ; 72(1): 42-6, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15728866

ABSTRACT

In August 2002, two cases of hantavirus pulmonary syndrome (HPS) were confirmed in Mineros and Concepcion, within the Santa Cruz Department of Bolivia. Extensive alteration of the native ecosystem, from dense forest to pasture or sugarcane, had occurred in both regions. An ecologic assessment of reservoir species associated with the human disease identified a single hantavirus antibody-positive Oligoryzomys microtis from Mineros and three hantavirus antibody-positive Calomys callosus from Concepcion. In Mineros, the virus from the O. microtis was 90% similar to sequences published for Rio Mamore virus. Viral nucleotide sequences from two C. callosus were 87-88% similar to the sequence of Laguna Negra virus. The viral sequence from the C. callosus was 99% identical to viral sequences obtained from the HPS patient in this area, implicating C. callosus as the host and Laguna Negra virus as the agent responsible for the HPS case near Concepcion.


Subject(s)
Hantavirus Pulmonary Syndrome/epidemiology , Hantavirus Pulmonary Syndrome/transmission , Orthohantavirus/genetics , Rodentia/virology , Animals , Bolivia/epidemiology , Disease Reservoirs , Genotype , Orthohantavirus/classification , Orthohantavirus/isolation & purification , Hantavirus Pulmonary Syndrome/blood , Humans , Molecular Sequence Data , Phylogeny , RNA, Viral/analysis , Rats , Reverse Transcriptase Polymerase Chain Reaction
5.
Am J Trop Med Hyg ; 72(2): 189-97, 2005 Feb.
Article in English | MEDLINE | ID: mdl-15741556

ABSTRACT

We conducted a randomized, double-blind, phase III yellow fever (YF) vaccine trial among 1,107 healthy children in Sullana in northern Peru. The safety and efficacy (by measurement of geometric mean neutralizing antibody titer responses) were determined for two YF vaccines, ARILVAX (n = 738) and YF-VAX(R) (n = 369). Serocon-version rates were higher (94.9%) in ARILVAX than in YF-VAX (90.6%) recipients. The two-sided 95% confidence interval (YF-VAX-ARILVAX) was (-12.8% to -2.5%), indicating that the higher seroconversion rate for Arilvax was significant. Post-vaccination (30-day) mean log(10) neutralization indices were found to be similar for both products: 1.32 for ARILVAX and 1.26 for YF-VAX (P = 0.1404, by analysis of variance). A similar number of subjects in each group reported at least one adverse event (AE); 441 (59.8%) for ARILVAX versus 211 (59.9%) for YF-VAX. Most (591; 96.7%) of these were of a mild nature and resolved without treatment. There were no treatment-related serious AEs. This is the first randomized, double-blind comparison of two YF vaccines in a pediatric population; both vaccines were shown to be highly immunogenic and well-tolerated.


Subject(s)
Yellow Fever Vaccine/therapeutic use , Yellow Fever/prevention & control , Yellow fever virus/immunology , Antibodies, Viral/blood , Child , Child, Preschool , Female , Humans , Infant , Male , Neutralization Tests , Peru/epidemiology , Treatment Outcome , Vaccination , Yellow Fever/blood , Yellow Fever/epidemiology , Yellow Fever/etiology , Yellow Fever/immunology , Yellow Fever Vaccine/adverse effects
6.
Clin Infect Dis ; 37(4): 559-66, 2003 Aug 15.
Article in English | MEDLINE | ID: mdl-12905141

ABSTRACT

Bartonella infection can be difficult to diagnose, especially when it manifests as bacteremia, which is usually accompanied by nonspecific symptoms, such as fever. Therefore, we hypothesized that Bartonella infection represents an underrecognized cause of febrile illness. To determine the prevalence of Bartonella infection among patients presenting with fever, we evaluated 382 patients in San Francisco. Overall, 68 patients (18%) had evidence of Bartonella infection detected by culture, indirect fluorescent antibody testing, or polymerase chain reaction (PCR). Twelve patients (3%) had either Bartonella henselae or Bartonella quintana isolated from specimens of blood, tissue, or both or had DNA detected in tissue; all 12 had concomitant human immunodeficiency virus (HIV) infection. Bartonella antibodies were detected in 17% of febrile patients, including 75% of culture-positive or PCR-positive patients. In a nested, matched case-control study aimed at identifying clinical features of febrile illness associated with Bartonella infection, only bacillary angiomatosis and elevated alkaline phosphatase levels were associated with Bartonella infection (P< or =.03 for both). The prevalence of Bartonella infection among patients with late-stage HIV infection and unexplained fever is much greater than has previously been documented.


Subject(s)
AIDS-Related Opportunistic Infections/microbiology , Bartonella Infections/epidemiology , Bartonella/isolation & purification , HIV Infections/microbiology , AIDS-Related Opportunistic Infections/epidemiology , Bartonella Infections/microbiology , Bartonella Infections/physiopathology , Case-Control Studies , Environmental Exposure , Fever/etiology , Humans , Prevalence , Serologic Tests , Social Class
7.
Am J Trop Med Hyg ; 70(4): 357-63, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15100447

ABSTRACT

Between May and October 2002, a cluster of acute febrile illnesses occurred in the subtropical Andean foothills of Peru. Serologic evidence in villages where disease had been documented showed that the prevalence of IgM antibody to Leptospira ranged from 6% to 52%, that of IgM antibody to spotted fever group (SFG) rickettsia ranged from 10% to 19%, and that of IgM antibody to Coxiella burnetii from 1% to 15%. Measurement of IgG antibodies for SFG rickettsiae suggested that this disease was endemic. In contrast, IgG antibodies against C. burnetii were largely absent. In humans, microagglutination tests identified pathogenic variants of Leptospira. The presence of an SFG rickettsial infection was confirmed in four febrile patients following polymerase chain reaction and sequencing of the conserved 17-kD common antigen gene (htrA). Collectively, these analyses indicated that Rickettsia sp., C. burnetii, and Leptospira sp. were circulating in the region during the time of disease outbreak and implicate the involvement of an as yet undetermined SFG rickettsia in northwestern Peru.


Subject(s)
Coxiella burnetii/isolation & purification , Disease Outbreaks , Gram-Negative Bacterial Infections/epidemiology , Gram-Negative Bacterial Infections/microbiology , Leptospira/isolation & purification , Rickettsia/isolation & purification , Adolescent , Adult , Aged , Agglutination Tests , Antibodies, Bacterial/blood , Child , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Enzyme-Linked Immunosorbent Assay , Fluorescent Antibody Technique, Indirect , Gram-Negative Bacterial Infections/immunology , Humans , Middle Aged , Peru/epidemiology , Polymerase Chain Reaction , Rickettsia/genetics , Rural Population , Seroepidemiologic Studies
8.
Am J Trop Med Hyg ; 67(3): 278-86, 2002 Sep.
Article in English | MEDLINE | ID: mdl-12408667

ABSTRACT

The importance of leptospirosis in Southeast Asia was assessed in conjunction with other studies supported by the U.S. Naval Medical Research Unit No. 2 (US NAMRU-2), Jakarta, Republic of Indonesia. These included studies of hospital-based, acute clinical jaundice in Indonesia, Lao PDR, and Socialist Republic of Vietnam; nonmalarial fever in Indonesia; and hemorrhagic fever in Cambodia. Background prevalence estimates of leptospiral infection were obtained by a cross-sectional, community-based study in Lao PDR. Laboratory testing methods involved serology, microscopic agglutination test, and reverse-transcriptase polymerase chain reaction. Suggestive evidence of recent leptospiral infections was detected in 17%, 13%, and 3% of patients selected on the basis of non-hepatitis A through E jaundice, nonmalarial fever, and hemorrhagic fever (in the absence of acute, dengue viral infections). Leptospiral IgG antibody, reflective of prior infections, was detected in 37% of human sera, collected in Lao PDR. The predominant leptospiral serogroups identified from cases with clinical jaundice were Hurstbridge, Bataviae, and Icterohaemorrhagiae tonkini LT 96 69. Among the nonmalarial febrile cases, Bataviae was the most frequently recognized serogroup. Pyrogenes and Hurstbridge were the principal serogroups among the hemorrhagic fever case subjects. These findings further attest to the relative importance of clinical leptospirosis in Southeast Asia. The wide spectrum of clinical signs and symptoms associated with probable, acute, leptospiral infections contributes to the potential of significant underreporting.


Subject(s)
Leptospirosis/epidemiology , Adolescent , Adult , Asia, Southeastern/epidemiology , Base Sequence , Cross-Sectional Studies , DNA Primers , Demography , Enzyme-Linked Immunosorbent Assay , Female , Humans , Leptospira/genetics , Leptospira/immunology , Male , Middle Aged , Molecular Epidemiology , Polymerase Chain Reaction
9.
Am J Trop Med Hyg ; 71(2): 153-9, 2004 Aug.
Article in English | MEDLINE | ID: mdl-15306703

ABSTRACT

Infections with hepatitis C virus, (HCV), hepatitis B virus (HBV), and human T lymphotropic type I/II (HTLV-I/II) virus are commonly found in patients infected with human immunodeficiency virus type 1 (HIV-1). We conducted a seroepidemiologic study among 174 HIV-positive heterosexuals in Buenos Aires, Argentina in 1999. Evidence of exposure to HCV, HBV, and HTLV-I/II was found in 32%, 17%, and 5%, respectively. A higher prevalence of HBV infection was observed among males (33%) compared with females (12%; P < 0.05). Among women, a prior history of a sexually transmitted infection, injecting drug use (IDU), having had more than five lifetime sex partners, and having exchanged sex-for-goods were significantly associated with HCV infection, whereas an IDU history, syringe sharing, and having exchanged sex-for-goods were found to be associated with HBV infection. Among men, an IDU history and syringe/needle sharing were significantly associated with HCV infection. The IDU-related and sexual transmission of hepatitis viruses constitute a significant problem among young, HIV-infected, heterosexuals in Argentina.


Subject(s)
Antibodies, Viral/blood , HIV Infections/complications , HIV Infections/epidemiology , HTLV-I Infections/epidemiology , HTLV-II Infections/epidemiology , Hepatitis B/epidemiology , Hepatitis C/epidemiology , Heterosexuality , Adolescent , Adult , Argentina/epidemiology , Cross-Sectional Studies , Female , HIV-1/immunology , HTLV-I Infections/complications , HTLV-II Infections/complications , Hepacivirus/immunology , Hepatitis B/complications , Hepatitis B virus/immunology , Hepatitis C/complications , Human T-lymphotropic virus 1/immunology , Human T-lymphotropic virus 2/immunology , Humans , Male , Middle Aged , Prevalence , Risk Factors , Seroepidemiologic Studies
10.
Vector Borne Zoonotic Dis ; 2(2): 61-8, 2002.
Article in English | MEDLINE | ID: mdl-12653299

ABSTRACT

We conducted a pilot study to evaluate the efficacy of rodent proofing continuously occupied homes as a method for lowering the risk for hantavirus pulmonary syndrome (HPS) among residents of a Native American community in northwestern New Mexico. Rodent proofing of dwellings was paired with culturally appropriate health education. Seventy homes were randomly assigned to treatment or control categories. Treatment homes were rodent-proofed by sealing openings around foundations, doors, roofs, and pipes and repairing screens and windows. Repairs to each dwelling were limited to $500 US. After repairs were completed, 15-20 snap traps were placed in each treatment and control home and checked approximately every 2 days for an average of 3-4 weeks. During 23,373 trap nights, one house mouse (Mus musculus) was captured in one treatment home, and 20 mice (16 deer mice, Peromyscus maniculatus, two Pinyon mice, Peromyscus truei, and two unidentified mice) were captured in five control homes (one house had 14 captures, two had two captures, and two had one capture). Trap success was 0.01% in treatment homes and 0.15% in controls. Intensity of infestation (mean number of mice captured per infested home) was 1 in treatment homes and 4 in controls. Observations of evidence of infestation (feces, nesting material, gnaw marks, or reports of infestation by occupant) per 100 days of observation were 1.2 in treatment homes and 3.1 in controls. Statistical power of the experiment was limited because it coincided with a period of low rodent abundance (August-November 2000). Nevertheless, these results suggest that inexpensive rodent proofing of occupied rural homes can decrease the frequency and intensity of rodent intrusion, thereby reducing the risk of HPS among rural residents in the southwestern United States.


Subject(s)
Hantavirus Infections/prevention & control , Indians, North American , Mice/classification , Mice/virology , Rodent Control/methods , Animals , Costs and Cost Analysis , Disease Vectors/classification , Orthohantavirus , Hantavirus Infections/transmission , Housing , New Mexico , Peromyscus/classification , Peromyscus/virology , Risk , Time Factors
11.
J Med Entomol ; 41(6): 1123-42, 2004 Nov.
Article in English | MEDLINE | ID: mdl-15605653

ABSTRACT

Large-scale longitudinal cohort studies are necessary to characterize temporal and geographic variation in Aedes aegypti (L.) (Diptera: Culicidae) production patterns and to develop targeted dengue control strategies that will reduce disease. We carried out pupal/demographic surveys in a circuit of approximately 6,000 houses, 10 separate times, between January 1999 and August 2002 in the Amazonian city of Iquitos, Peru. We quantified the number of containers positive for Ae. aegypti larvae and/or pupae, containers holding pupae, and the absolute number of pupae by 4-mo sampling circuits and spatially by geographic area by using a geographic information system developed for the city. A total of 289,941 water-holding containers were characterized, of which 7.3% were positive for Ae. aegypti. Temporal and geographic variations were detected for all variables examined, and the relative importance of different container types for production of Ae. aegypti was calculated. Ae. aegypti larvae and pupae were detected in 64 types of containers. Consistent production patterns were observed for the lid status (lids: 32% wet containers, 2% pupal production), container location (outdoor: 43% wet containers, 85% pupal production), and method by which the container was filled with water (rain filled: 15% wet containers, 88.3% pupal production); these patterns were consistent temporally and geographically. We describe a new container category (nontraditional) that includes transient puddles, which were rare but capable of producing large numbers of pupae. Because of high variable pupal counts, four container categories (large tank, medium storage, miscellaneous, and nontraditional) should be targeted in addition to outdoor rain-filled containers that are not covered by a lid. The utility of targeted Ae. aegypti control is discussed, as well as the ability to achieve control objectives based on published but untested threshold values.


Subject(s)
Aedes/growth & development , Animals , Demography , Geography , Humans , Larva , Peru , Population Density , Pupa , Time Factors , Urban Health
12.
PLoS Negl Trop Dis ; 6(10): e1840, 2012.
Article in English | MEDLINE | ID: mdl-23094116

ABSTRACT

We report the results of an investigation of a small outbreak of hantavirus pulmonary syndrome in 2002 in the Department of Santa Cruz, Bolivia, where the disease had not previously been reported. Two cases were initially reported. The first case was a physician infected with Laguna Negra virus during a weekend visit to his ranch. Four other persons living on the ranch were IgM antibody-positive, two of whom were symptomatic for mild hantavirus pulmonary syndrome. The second case was a migrant sugarcane worker. Although no sample remained to determine the specific infecting hantavirus, a virus 90% homologous with Río Mamoré virus was previously found in small-eared pygmy rice rats (Oligoryzomys microtis) trapped in the area. An antibody prevalence study conducted in the region as part of the outbreak investigation showed 45 (9.1%) of 494 persons to be IgG positive, illustrating that hantavirus infection is common in Santa Cruz Department. Precipitation in the months preceding the outbreak was particularly heavy in comparison to other years, suggesting a possible climatic or ecological influence on rodent populations and risk of hantavirus transmission to humans. Hantavirus infection appears to be common in the Santa Cruz Department, but more comprehensive surveillance and field studies are needed to fully understand the epidemiology and risk to humans.


Subject(s)
Antibodies, Viral/blood , Disease Outbreaks , Hantavirus Pulmonary Syndrome/epidemiology , Adolescent , Adult , Aged , Aged, 80 and over , Bolivia/epidemiology , Child , Child, Preschool , Female , Humans , Immunoglobulin G/blood , Immunoglobulin M/blood , Male , Middle Aged , Seroepidemiologic Studies , Weather , Young Adult
13.
Am J Trop Med Hyg ; 86(1): 46-51, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22232450

ABSTRACT

We conducted a prospective, inpatient fever study in malaria-endemic Papua, Indonesia to determine non-malaria fever etiologies. Investigations included malaria blood films, blood culture, paired serologic samples analysis for dengue, Japanese encephalitis, leptospirosis, scrub typhus, murine typhus, and spotted fever group rickettsia. During 1997-2000, 226 patients (127 males and 99 females) 1-80 years of age (median age = 25 years) were enrolled. Positive blood cultures (n = 34, 15%) were obtained for Salmonella Typhi (n = 13), Escherichia coli (n = 8), Streptococcus pneumoniae (n = 6), Staphylococcus aureus (n = 5), Streptococcus pyogenes (n = 1), and Klebsiella pneumoniae (n = 1). Twenty (8.8%) patients were positive for leptospirosis by polymerase chain reaction. Eighty (35.4%) of 226 patients had ≥ 1 positive serology, diagnostic for 15 rickettsial and 9 dengue cases. Acid-fast bacilli-positive sputum was obtained from three patients. Most common confirmed (81 of 226, 35.8%)/suspected diagnoses were typhoid fever (n = 41), pneumonia (n = 29), leptospirosis (n = 28), urinary tract infections (n = 20), rickettsioses (n = 19), dengue (n = 17), and meningitis/encephalitis (n = 15). There were 17 deaths, 7 (46.7%) were caused by meningitis/encephalitis. Multiple positive serologic results and few confirmed diagnoses indicate the need for improved diagnostics.


Subject(s)
Bacterial Infections/complications , Fever/epidemiology , Fever/etiology , Virus Diseases/complications , Acute Disease , Adolescent , Adult , Aged , Aged, 80 and over , Bacteremia/complications , Bacteremia/epidemiology , Bacteremia/microbiology , Bacteremia/mortality , Bacterial Infections/epidemiology , Bacterial Infections/microbiology , Bacterial Infections/mortality , Central Nervous System Infections/complications , Central Nervous System Infections/epidemiology , Central Nervous System Infections/etiology , Central Nervous System Infections/mortality , Child , Child, Preschool , Female , Humans , Infant , Male , Middle Aged , Papua New Guinea/epidemiology , Virus Diseases/epidemiology , Virus Diseases/mortality , Virus Diseases/virology , Young Adult
14.
PLoS Negl Trop Dis ; 6(2): e1472, 2012.
Article in English | MEDLINE | ID: mdl-22363822

ABSTRACT

BACKGROUND: Knowledge of spatial patterns of dengue virus (DENV) infection is important for understanding transmission dynamics and guiding effective disease prevention strategies. Because movement of infected humans and mosquito vectors plays a role in the spread and persistence of virus, spatial dimensions of transmission can range from small household foci to large community clusters. Current understanding is limited because past analyses emphasized clinically apparent illness and did not account for the potentially large proportion of inapparent infections. In this study we analyzed both clinically apparent and overall infections to determine the extent of clustering among human DENV infections. METHODOLOGY/PRINCIPAL FINDINGS: We conducted spatial analyses at global and local scales, using acute case and seroconversion data from a prospective longitudinal cohort in Iquitos, Peru, from 1999-2003. Our study began during a period of interepidemic DENV-1 and DENV-2 transmission and transitioned to epidemic DENV-3 transmission. Infection status was determined by seroconversion based on plaque neutralization testing of sequential blood samples taken at approximately six-month intervals, with date of infection assigned as the middate between paired samples. Each year was divided into three distinct seasonal periods of DENV transmission. Spatial heterogeneity was detected in baseline seroprevalence for DENV-1 and DENV-2. Cumulative DENV-3 seroprevalence calculated by trimester from 2001-2003 was spatially similar to preexisting DENV-1 and DENV-2 seroprevalence. Global clustering (case-control Ripley's K statistic) appeared at radii of ∼200-800 m. Local analyses (Kuldorf spatial scan statistic) identified eight DENV-1 and 15 DENV-3 clusters from 1999-2003. The number of seroconversions per cluster ranged from 3-34 with radii from zero (a single household) to 750 m; 65% of clusters had radii >100 m. No clustering was detected among clinically apparent infections. CONCLUSIONS/SIGNIFICANCE: Seroprevalence of previously circulating DENV serotypes can be a predictor of transmission risk for a different invading serotype and, thus, identify targets for strategically placed surveillance and intervention. Seroprevalence of a specific serotype is also important, but does not preclude other contributing factors, such as mosquito density, in determining where transmission of that virus will occur. Regardless of the epidemiological context or virus serotype, human movement appears to be an important factor in defining the spatial dimensions of DENV transmission and, thus, should be considered in the design and evaluation of surveillance and intervention strategies.


Subject(s)
Cluster Analysis , Dengue Virus/classification , Dengue Virus/isolation & purification , Dengue/epidemiology , Dengue/transmission , Adolescent , Adult , Aged , Aged, 80 and over , Antibodies, Neutralizing/blood , Antibodies, Viral/blood , Child , Child, Preschool , Cohort Studies , Dengue/virology , Dengue Virus/genetics , Female , Geography , Humans , Infant , Longitudinal Studies , Male , Middle Aged , Neutralization Tests , Peru/epidemiology , Prospective Studies , Seroepidemiologic Studies , Serotyping , Viral Plaque Assay , Young Adult
15.
Vector Borne Zoonotic Dis ; 11(4): 367-74, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21395427

ABSTRACT

Although encephalomyocarditis virus (EMCV) infection has been commonly documented among domestic animals, less is known about EMCV transmission among humans. Recently, we described the isolation of EMCV from two febrile patients in Peru. To further investigate EMCV transmission in Peru, we screened febrile patients reporting to health clinics in Peru for serological evidence of recent EMCV infection. We also conducted a serological survey for EMCV-neutralizing antibodies in the city of Iquitos, located in the Amazon basin department of Loreto, Peru. Additionally, we screened serum from rodents collected from 10 departments in Peru for evidence of EMCV exposure. EMCV infection was found to be only rarely associated with acute febrile disease in Peru, accounting for <1% of febrile episodes analyzed. Despite the low acute disease burden associated with the virus, human exposure was quite common, as prevalence of EMCV-neutralizing antibodies ranged between 6.0% in the coastal city of Tumbes and >17% in cities in the tropical rainforest of northeastern Peru (Iquitos and Yurimaguas). On the basis of the serological survey conducted in Iquitos, risk factors for past infection include increased age, socioeconomic indicators such as residence construction materials and neighborhood, and swine ownership. Evidence from the rodent survey indicates that EMCV exposure is common among Murinae subfamily rodents in Peru (9.4% EMCV IgG positive), but less common among Sigmodontinae rodents (1.0% positive). Further studies are necessary to more precisely delineate the mode of EMCV transmission to humans, other potential disease manifestations, and the economic impact of EMCV transmission among swine in Peru.


Subject(s)
Antibodies, Viral/blood , Cardiovirus Infections/epidemiology , Encephalomyocarditis virus/immunology , Murinae/virology , Sigmodontinae/virology , Adolescent , Adult , Aged , Aged, 80 and over , Animals , Cardiovirus Infections/blood , Cardiovirus Infections/transmission , Child , Child, Preschool , Encephalomyocarditis virus/isolation & purification , Enzyme-Linked Immunosorbent Assay , Female , Humans , Immunoglobulin G/blood , Immunoglobulin M/blood , Logistic Models , Male , Middle Aged , Peru/epidemiology , Prevalence , Risk Factors , Young Adult
16.
PLoS Negl Trop Dis ; 4(5): e670, 2010 May 04.
Article in English | MEDLINE | ID: mdl-20454609

ABSTRACT

BACKGROUND: Comprehensive, longitudinal field studies that monitor both disease and vector populations for dengue viruses are urgently needed as a pre-requisite for developing locally adaptable prevention programs or to appropriately test and license new vaccines. METHODOLOGY AND PRINCIPAL FINDINGS: We report the results from such a study spanning 5 years in the Amazonian city of Iquitos, Peru where DENV infection was monitored serologically among approximately 2,400 members of a neighborhood-based cohort and through school-based absenteeism surveillance for active febrile illness among a subset of this cohort. At baseline, 80% of the study population had DENV antibodies, seroprevalence increased with age, and significant geographic variation was observed, with neighborhood-specific age-adjusted rates ranging from 67.1 to 89.9%. During the first 15 months, when DENV-1 and DENV-2 were co-circulating, population-based incidence rates ranged from 2-3 infections/100 person-years (p-years). The introduction of DENV-3 during the last half of 2001 was characterized by 3 distinct periods: amplification over at least 5-6 months, replacement of previously circulating serotypes, and epidemic transmission when incidence peaked at 89 infections/100 p-years. CONCLUSIONS/SIGNIFICANCE: Neighborhood-specific baseline seroprevalence rates were not predictive of geographic incidence patterns prior to the DENV-3 introduction, but were closely mirrored during the invasion of this serotype. Transmission varied geographically, with peak incidence occurring at different times among the 8 geographic zones in approximately 16 km(2) of the city. The lag from novel serotype introduction to epidemic transmission and knowledge of spatially explicit areas of elevated risk should be considered for more effective application of limited resources for dengue prevention.


Subject(s)
Antibodies, Viral/blood , Dengue Virus/immunology , Dengue/epidemiology , Dengue/transmission , Absenteeism , Adolescent , Adult , Age Factors , Aged , Aged, 80 and over , Child , Child, Preschool , Cohort Studies , Female , Fever of Unknown Origin/epidemiology , Geography , Humans , Incidence , Longitudinal Studies , Male , Middle Aged , Peru/epidemiology , Seroepidemiologic Studies , Young Adult
17.
PLoS Negl Trop Dis ; 4(8): e787, 2010 Aug 10.
Article in English | MEDLINE | ID: mdl-20706628

ABSTRACT

BACKGROUND: Arthropod-borne viruses (arboviruses) are among the most common agents of human febrile illness worldwide and the most important emerging pathogens, causing multiple notable epidemics of human disease over recent decades. Despite the public health relevance, little is know about the geographic distribution, relative impact, and risk factors for arbovirus infection in many regions of the world. Our objectives were to describe the arboviruses associated with acute undifferentiated febrile illness in participating clinics in four countries in South America and to provide detailed epidemiological analysis of arbovirus infection in Iquitos, Peru, where more extensive monitoring was conducted. METHODOLOGY/FINDINGS: A clinic-based syndromic surveillance system was implemented in 13 locations in Ecuador, Peru, Bolivia, and Paraguay. Serum samples and demographic information were collected from febrile participants reporting to local health clinics or hospitals. Acute-phase sera were tested for viral infection by immunofluorescence assay or RT-PCR, while acute- and convalescent-phase sera were tested for pathogen-specific IgM by ELISA. Between May 2000 and December 2007, 20,880 participants were included in the study, with evidence for recent arbovirus infection detected for 6,793 (32.5%). Dengue viruses (Flavivirus) were the most common arbovirus infections, totaling 26.0% of febrile episodes, with DENV-3 as the most common serotype. Alphavirus (Venezuelan equine encephalitis virus [VEEV] and Mayaro virus [MAYV]) and Orthobunyavirus (Oropouche virus [OROV], Group C viruses, and Guaroa virus) infections were both observed in approximately 3% of febrile episodes. In Iquitos, risk factors for VEEV and MAYV infection included being male and reporting to a rural (vs urban) clinic. In contrast, OROV infection was similar between sexes and type of clinic. CONCLUSIONS/SIGNIFICANCE: Our data provide a better understanding of the geographic range of arboviruses in South America and highlight the diversity of pathogens in circulation. These arboviruses are currently significant causes of human illness in endemic regions but also have potential for further expansion. Our data provide a basis for analyzing changes in their ecology and epidemiology.


Subject(s)
Arbovirus Infections/epidemiology , Arbovirus Infections/virology , Arboviruses/classification , Fever of Unknown Origin/epidemiology , Fever of Unknown Origin/etiology , Adolescent , Adult , Aged , Aged, 80 and over , Antibodies, Viral/blood , Arbovirus Infections/pathology , Arboviruses/isolation & purification , Child , Child, Preschool , Enzyme-Linked Immunosorbent Assay , Female , Fluorescent Antibody Technique, Direct , Humans , Immunoglobulin M/blood , Infant , Infant, Newborn , Male , Middle Aged , Prevalence , Reverse Transcriptase Polymerase Chain Reaction , South America/epidemiology , Young Adult
18.
Am J Trop Med Hyg ; 80(4): 656-60, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19346395

ABSTRACT

Endemic dengue transmission has been documented in the Amazonian city of Iquitos, Peru, since the early 1990s. To better understand the epidemiology of dengue transmission in Iquitos, we established multiple active surveillance systems to detect symptomatic infections. Here we compare the efficacy of distinct community-based (door to door) and school absenteeism-based febrile surveillance strategies in detecting active cases of dengue. Febrile episodes were detected by both systems with equal rapidity after disease onset. However, during the period that both programs were running simultaneously in 2004, a higher number of febrile cases in general (4.52/100 versus 1.64/100 person-years) and dengue cases specifically (2.35/100 versus 1.29/100 person-years) were detected in school-aged children through the community-based surveillance program. Similar results were obtained by direct comparison of 435 participants concurrently enrolled in both programs (P < 0.005). We conclude that, in Iquitos, community-based door-to-door surveillance is a more efficient and sensitive design for detecting active dengue cases than programs based on school absenteeism.


Subject(s)
Dengue/epidemiology , Population Surveillance/methods , Adolescent , Child , Child, Preschool , Cohort Studies , Female , Humans , Male , Peru/epidemiology , Schools
19.
Vector Borne Zoonotic Dis ; 9(1): 87-92, 2009 Feb.
Article in English | MEDLINE | ID: mdl-18788903

ABSTRACT

In 2001, we began a prospective longitudinal study in a cohort of schoolchildren 5-13 years of age residing in Maracay, Venezuela, to determine the cumulative incidence of dengue virus (DENV) infections by virus serotype. This report presents serological data from 710 schoolchildren who were tested during the first 2 years of the study. Serological evaluations were conducted by plaque reduction neutralization test (PRNT). At study initiation, 51% of children had PRNT antibody titers against one (30.1% = 13.4% DENV-1, 14.2% DENV-2, 0.6% DENV-3, and 2% DENV-4) or multiple DENV serotypes (20.9%). By the end of the first year, 89 of 348 (25.6%) PRNT-negative children seroconverted, and 94 of 362 (26%) who were PRNT-positive in their baseline sera tested positive for additional serotypes, for an overall cumulative incidence of DENV infections of 25.8%. By serotype, the percentages found were 1.4% DENV-1, 1.4% DENV-2, 19% DENV-3, and 1.2% DENV-4. In the second year, 37 of 259 (14.3%) PRNT-negative children seroconverted, and 83 of 451 (18.4%) who had monotypic and multitypic PRNT patterns in their baseline sera exhibited additional serotype seroconversions, for an overall cumulative incidence of DENV infections of 16.9%. By serotype, the percentages found were 0.8% DENV-1, 1.5% DENV-2, 8.5% DENV-3, and 2.3% DENV-4. Overall, these results suggest a high cumulative incidence of DENV infections among 5-13-year-old school children in Maracay, Venezuela.


Subject(s)
Antibodies, Viral/blood , Dengue Virus/isolation & purification , Dengue/epidemiology , Endemic Diseases/statistics & numerical data , Adolescent , Antibodies, Viral/immunology , Child , Child, Preschool , Cohort Studies , Dengue/immunology , Dengue Virus/immunology , Female , Humans , Incidence , Longitudinal Studies , Male , Neutralization Tests , Prospective Studies , Seroepidemiologic Studies , Serologic Tests , Serotyping , Venezuela/epidemiology
20.
Am J Trop Med Hyg ; 81(1): 146-51, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19556580

ABSTRACT

We conducted a longitudinal observational study of 533 patients presenting to two hospitals in the Ecuadorean Amazon basin with acute undifferentiated febrile illness (AUFI) from 2001 through 2004. Viral isolation, reverse transcription-polymerase chain reaction (RT-PCR), IgM seroconversion, and malaria smears identified pathogens responsible for fever in 122 (40.1%) of 304 patients who provided both acute and convalescent blood samples. Leptospirosis was found in 40 (13.2%), malaria in 38 (12.5%), rickettsioses in 18 (5.9%), dengue fever in 16 (5.3%), Q fever in 15 (4.9%), brucellosis in 4 (1.3%), Ilhéus infection in 3 (1.0%), and Venezuelan equine encephalitis (VEE), Oropouche, and St. Louis encephalitis virus infections in less than 1% of these patients. Viral isolation and RT-PCR on another 229 participants who provided only acute samples identified 3 cases of dengue fever, 2 of VEE, and 1 of Ilhéus. None of these pathogens, except for malaria, had previously been detected in the study area.


Subject(s)
Fever/etiology , Acute Disease , Adolescent , Adult , Aged , Child , Child, Preschool , Dengue/physiopathology , Humans , Infant , Infant, Newborn , Leptospirosis/physiopathology , Longitudinal Studies , Malaria/physiopathology , Middle Aged , Q Fever/physiopathology
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