Extensive intragenomic variation in the internal transcribed spacer region of fungi.

Fungi are among the most biodiverse organisms in the world. Accurate species identification is imperative for studies on fungal ecology and evolution. The internal transcribed spacer (ITS) rDNA region has been widely accepted as the universal barcode for fungi. However, several recent studies have uncovered intragenomic sequence variation within the ITS in multiple fungal species. Here, we mined the genome of 2414 fungal species to determine the prevalence of intragenomic variation and found that the genomes of 641 species, about one-quarter of the 2414 species examined, contained multiple ITS copies. Of those 641 species, 419 (∼65%) contained variation among copies revealing that intragenomic variation is common in fungi. We proceeded to show how these copies could result in the erroneous description of hundreds of fungal species and skew studies evaluating environmental DNA (eDNA) especially when making diversity estimates. Additionally, many genomes were found to be contaminated, especially those of unculturable fungi.

An assessment of the efficacy and peak catch rates of emergence tents for measuring bee nesting.

PREMISE OF THE STUDY: Emergence tents are a new tool used to understand nesting ecology of ground nesting bee species. However, many questions remain about how to use tents effectively. We assessed (a) variance in tent capture rates over time, (b) the effects of site characteristics on proportion of tents capturing bees, and (c) the effect of soil characteristics on nest site choice. METHODS: Emergence tents were placed out for one week in May, June, and August and checked daily. Soil, bee, and floral characteristics were recorded. RESULTS: Across all sites and months the average number of tents capturing bees was less than 20% during one week of sampling, but this varied between sites. Tent captures decreased after 48 h deployment, but accumulation differed seasonally, with slower accumulation of total bees caught in May than in June or August. Although capture rates were not affected by bee or floral abundance, soil moisture beneath a tent influenced where bees were captured. DISCUSSION: Effective use of emergence tents may require adjusting the length of deployment depending on season and will require a minimum of 48 h installation to help maximize efficacy. The overall low capture rates demonstrate the need to optimize emergence tent use.