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1.

T Cell Epitope Predictions.

Peters, Bjoern; Nielsen, Morten; Sette, Alessandro.

Annu Rev Immunol ; 38: 123-145, 2020 04 26.

Article in English | MEDLINE | ID: mdl-32045313

2.

Neoantigen-specific stem cell memory-like CD4⁺ T cells mediate CD8⁺ T cell-dependent immunotherapy of MHC class II-negative solid tumors.

Brightman, Spencer E; Becker, Angelica; Thota, Rukman R; Naradikian, Martin S; Chihab, Leila; Zavala, Karla Soria; Ramamoorthy Premlal, Ashmitaa Logandha; Griswold, Ryan Q; Dolina, Joseph S; Cohen, Ezra E W; Miller, Aaron M; Peters, Bjoern; Schoenberger, Stephen P.

Nat Immunol ; 24(8): 1345-1357, 2023 08.

Article in English | MEDLINE | ID: mdl-37400675

3.

Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals.

Grifoni, Alba; Weiskopf, Daniela; Ramirez, Sydney I; Mateus, Jose; Dan, Jennifer M; Moderbacher, Carolyn Rydyznski; Rawlings, Stephen A; Sutherland, Aaron; Premkumar, Lakshmanane; Jadi, Ramesh S; Marrama, Daniel; de Silva, Aravinda M; Frazier, April; Carlin, Aaron F; Greenbaum, Jason A; Peters, Bjoern; Krammer, Florian; Smith, Davey M; Crotty, Shane; Sette, Alessandro.

Cell ; 181(7): 1489-1501.e15, 2020 06 25.

Article in English | MEDLINE | ID: mdl-32473127

4.

Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity.

Rydyznski Moderbacher, Carolyn; Ramirez, Sydney I; Dan, Jennifer M; Grifoni, Alba; Hastie, Kathryn M; Weiskopf, Daniela; Belanger, Simon; Abbott, Robert K; Kim, Christina; Choi, Jinyong; Kato, Yu; Crotty, Eleanor G; Kim, Cheryl; Rawlings, Stephen A; Mateus, Jose; Tse, Long Ping Victor; Frazier, April; Baric, Ralph; Peters, Bjoern; Greenbaum, Jason; Ollmann Saphire, Erica; Smith, Davey M; Sette, Alessandro; Crotty, Shane.

Cell ; 183(4): 996-1012.e19, 2020 11 12.

Article in English | MEDLINE | ID: mdl-33010815

5.

Impact of Genetic Polymorphisms on Human Immune Cell Gene Expression.

Schmiedel, Benjamin J; Singh, Divya; Madrigal, Ariel; Valdovino-Gonzalez, Alan G; White, Brandie M; Zapardiel-Gonzalo, Jose; Ha, Brendan; Altay, Gokmen; Greenbaum, Jason A; McVicker, Graham; Seumois, Grégory; Rao, Anjana; Kronenberg, Mitchell; Peters, Bjoern; Vijayanand, Pandurangan.

Cell ; 175(6): 1701-1715.e16, 2018 11 29.

Article in English | MEDLINE | ID: mdl-30449622

6.

Author Correction: Neoantigen-specific stem cell memory-like CD4⁺ T cells mediate CD8⁺ T cell-dependent immunotherapy of MHC class II-negative solid tumors.

Brightman, Spencer E; Becker, Angelica; Thota, Rukman R; Naradikian, Martin S; Chihab, Leila; Zavala, Karla Soria; Ramamoorthy Premlal, Ashmitaa Logandha; Griswold, Ryan Q; Dolina, Joseph S; Cohen, Ezra E W; Miller, Aaron M; Peters, Bjoern; Schoenberger, Stephen P.

Nat Immunol ; 24(8): 1391, 2023 Aug.

Article in English | MEDLINE | ID: mdl-37464051

7.

Epigenomic analysis of primary human T cells reveals enhancers associated with TH2 memory cell differentiation and asthma susceptibility.

Seumois, Grégory; Chavez, Lukas; Gerasimova, Anna; Lienhard, Matthias; Omran, Nada; Kalinke, Lukas; Vedanayagam, Maria; Ganesan, Asha Purnima V; Chawla, Ashu; Djukanovic, Ratko; Ansel, K Mark; Peters, Bjoern; Rao, Anjana; Vijayanand, Pandurangan.

Nat Immunol ; 15(8): 777-88, 2014 Aug.

Article in English | MEDLINE | ID: mdl-24997565

8.

Next-generation IEDB tools: a platform for epitope prediction and analysis.

Yan, Zhen; Kim, Kevin; Kim, Haeuk; Ha, Brendan; Gambiez, Anaïs; Bennett, Jason; de Almeida Mendes, Marcus Fabiano; Trevizani, Raphael; Mahita, Jarjapu; Richardson, Eve; Marrama, Daniel; Blazeska, Nina; Kosaloglu-Yalçin, Zeynep; Nielsen, Morten; Sette, Alessandro; Peters, Bjoern; Greenbaum, Jason A.

Nucleic Acids Res ; 2024 May 23.

Article in English | MEDLINE | ID: mdl-38783079

9.

The Cancer Epitope Database and Analysis Resource (CEDAR).

Kosaloglu-Yalçin, Zeynep; Blazeska, Nina; Vita, Randi; Carter, Hannah; Nielsen, Morten; Schoenberger, Stephen; Sette, Alessandro; Peters, Bjoern.

Nucleic Acids Res ; 51(D1): D845-D852, 2023 01 06.

Article in English | MEDLINE | ID: mdl-36250634

10.

A comprehensive analysis of the IEDB MHC class-I automated benchmark.

Trevizani, Raphael; Yan, Zhen; Greenbaum, Jason A; Sette, Alessandro; Nielsen, Morten; Peters, Bjoern.

Brief Bioinform ; 23(4)2022 07 18.

Article in English | MEDLINE | ID: mdl-35794711

11.

Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data.

Rubelt, Florian; Busse, Christian E; Bukhari, Syed Ahmad Chan; Bürckert, Jean-Philippe; Mariotti-Ferrandiz, Encarnita; Cowell, Lindsay G; Watson, Corey T; Marthandan, Nishanth; Faison, William J; Hershberg, Uri; Laserson, Uri; Corrie, Brian D; Davis, Mark M; Peters, Bjoern; Lefranc, Marie-Paule; Scott, Jamie K; Breden, Felix; Luning Prak, Eline T; Kleinstein, Steven H.

Nat Immunol ; 18(12): 1274-1278, 2017 11 16.

Article in English | MEDLINE | ID: mdl-29144493

12.

Immunodominant MHC-II (Major Histocompatibility Complex II) Restricted Epitopes in Human Apolipoprotein B.

Roy, Payel; Sidney, John; Lindestam Arlehamn, Cecilia S; Phillips, Elizabeth; Mallal, Simon; Armstrong Suthahar, Sujit Silas; Billitti, Monica; Rubiro, Paul; Marrama, Daniel; Drago, Fabrizio; Vallejo, Jenifer; Suryawanshi, Vasantika; Orecchioni, Marco; Makings, Jeffrey; Kim, Paul J; McNamara, Coleen A; Peters, Bjoern; Sette, Alessandro; Ley, Klaus.

Circ Res ; 131(3): 258-276, 2022 07 22.

Article in English | MEDLINE | ID: mdl-35766025

13.

Minimal Information about MHC Multimers (MIAMM).

Vita, Randi; Mody, Apurva; Overton, James A; Buus, Soren; Haley, Stephen T; Sette, Alessandro; Mallajosyula, Vamsee; Davis, Mark M; Long, Dale L; Willis, Richard A; Peters, Bjoern; Altman, John D.

J Immunol ; 208(3): 531-537, 2022 02 01.

Article in English | MEDLINE | ID: mdl-35042788

14.

Epitope prediction and identification- adaptive T cell responses in humans.

Sidney, John; Peters, Bjoern; Sette, Alessandro.

Semin Immunol ; 50: 101418, 2020 08.

Article in English | MEDLINE | ID: mdl-33131981

15.

T-cell epitope discovery and single-cell technologies to advance food allergy research.

Lewis, Sloan A; Peters, Bjoern.

J Allergy Clin Immunol ; 151(1): 15-20, 2023 01.

Article in English | MEDLINE | ID: mdl-36411114

16.

Identification of cow milk epitopes to characterize and quantify disease-specific T cells in allergic children.

Lewis, Sloan A; Sutherland, Aaron; Soldevila, Ferran; Westernberg, Luise; Aoki, Minori; Frazier, April; Maiche, Synaida; Erlewyn-Lajeunesse, Mich; Arshad, Hasan; Leonard, Stephanie; Laubach, Susan; Dantzer, Jennifer A; Wood, Robert A; Sette, Alessandro; Seumois, Gregory; Vijayanand, Pandurangan; Peters, Bjoern.

J Allergy Clin Immunol ; 152(5): 1196-1209, 2023 11.

Article in English | MEDLINE | ID: mdl-37604312

17.

PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins.

Marrama, Daniel; Chronister, William D; Westernberg, Luise; Vita, Randi; Kosaloglu-Yalçin, Zeynep; Sette, Alessandro; Nielsen, Morten; Greenbaum, Jason A; Peters, Bjoern.

BMC Bioinformatics ; 24(1): 485, 2023 Dec 18.

Article in English | MEDLINE | ID: mdl-38110863

18.

Disruption of mitochondrial quality control genes promotes caspase-resistant cell survival following apoptotic stimuli.

Kushnareva, Yulia; Moraes, Vivian; Suess, Julian; Peters, Bjoern; Newmeyer, Donald D; Kuwana, Tomomi.

J Biol Chem ; 298(4): 101835, 2022 04.

Article in English | MEDLINE | ID: mdl-35304098

19.

In vivo RNA interference screens identify regulators of antiviral CD4(+) and CD8(+) T cell differentiation.

Chen, Runqiang; Bélanger, Simon; Frederick, Megan A; Li, Bin; Johnston, Robert J; Xiao, Nengming; Liu, Yun-Cai; Sharma, Sonia; Peters, Bjoern; Rao, Anjana; Crotty, Shane; Pipkin, Matthew E.

Immunity ; 41(2): 325-38, 2014 Aug 21.

Article in English | MEDLINE | ID: mdl-25148027

20.

Towards the prediction of non-peptidic epitopes.

Zierep, Paul F; Vita, Randi; Blazeska, Nina; Moumbock, Aurélien F A; Greenbaum, Jason A; Peters, Bjoern; Günther, Stefan.

PLoS Comput Biol ; 18(2): e1009151, 2022 02.

Article in English | MEDLINE | ID: mdl-35180214

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