Search details
1.
Phase separation drives aberrant chromatin looping and cancer development.
Nature
; 595(7868): 591-595, 2021 07.
Article
in English
| MEDLINE | ID: mdl-34163069
2.
Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features.
Genome Res
; 33(8): 1258-1268, 2023 08.
Article
in English
| MEDLINE | ID: mdl-37699658
3.
Cell type-specific chromatin topology and gene regulation.
Trends Genet
; 38(5): 413-415, 2022 05.
Article
in English
| MEDLINE | ID: mdl-35221113
4.
Mariner: explore the Hi-Cs.
Bioinformatics
; 40(6)2024 Jun 03.
Article
in English
| MEDLINE | ID: mdl-38814811
5.
Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development.
Mol Cell
; 67(6): 1037-1048.e6, 2017 Sep 21.
Article
in English
| MEDLINE | ID: mdl-28890333
6.
bootRanges: flexible generation of null sets of genomic ranges for hypothesis testing.
Bioinformatics
; 39(5)2023 05 04.
Article
in English
| MEDLINE | ID: mdl-37042725
7.
matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling.
Bioinformatics
; 39(5)2023 05 04.
Article
in English
| MEDLINE | ID: mdl-37084270
8.
excluderanges: exclusion sets for T2T-CHM13, GRCm39, and other genome assemblies.
Bioinformatics
; 39(4)2023 04 03.
Article
in English
| MEDLINE | ID: mdl-37067481
9.
Plotgardener: cultivating precise multi-panel figures in R.
Bioinformatics
; 38(7): 2042-2045, 2022 03 28.
Article
in English
| MEDLINE | ID: mdl-35134826
10.
Genome-wide map of regulatory interactions in the human genome.
Genome Res
; 24(12): 1905-17, 2014 Dec.
Article
in English
| MEDLINE | ID: mdl-25228660
11.
Mango: a bias-correcting ChIA-PET analysis pipeline.
Bioinformatics
; 31(19): 3092-8, 2015 Oct 01.
Article
in English
| MEDLINE | ID: mdl-26034063
12.
Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures.
Bioinformatics
; 30(19): 2808-10, 2014 Oct.
Article
in English
| MEDLINE | ID: mdl-24903420
13.
Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging.
Nat Methods
; 8(11): 933-5, 2011 Oct 02.
Article
in English
| MEDLINE | ID: mdl-21963608
14.
Proteomic and phosphoproteomic comparison of human ES and iPS cells.
Nat Methods
; 8(10): 821-7, 2011 Sep 11.
Article
in English
| MEDLINE | ID: mdl-21983960
15.
Whole-exome sequencing identifies tetratricopeptide repeat domain 7A (TTC7A) mutations for combined immunodeficiency with intestinal atresias.
J Allergy Clin Immunol
; 132(3): 656-664.e17, 2013 Sep.
Article
in English
| MEDLINE | ID: mdl-23830146
16.
Proteomics and pluripotency.
Crit Rev Biochem Mol Biol
; 46(6): 493-506, 2011 Dec.
Article
in English
| MEDLINE | ID: mdl-21999516
17.
TDP-43 pathology links innate and adaptive immunity in amyotrophic lateral sclerosis.
bioRxiv
; 2024 Jan 10.
Article
in English
| MEDLINE | ID: mdl-38260395
18.
Higher-energy collision-activated dissociation without a dedicated collision cell.
Mol Cell Proteomics
; 10(5): O111.009456, 2011 May.
Article
in English
| MEDLINE | ID: mdl-21393638
19.
Guiding the design of well-powered Hi-C experiments to detect differential loops.
bioRxiv
; 2023 Mar 16.
Article
in English
| MEDLINE | ID: mdl-36993250
20.
Guiding the design of well-powered Hi-C experiments to detect differential loops.
Bioinform Adv
; 3(1): vbad152, 2023.
Article
in English
| MEDLINE | ID: mdl-38023330