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1.

Lymph node colonization induces tumor-immune tolerance to promote distant metastasis.

Reticker-Flynn, Nathan E; Zhang, Weiruo; Belk, Julia A; Basto, Pamela A; Escalante, Nichole K; Pilarowski, Genay O W; Bejnood, Alborz; Martins, Maria M; Kenkel, Justin A; Linde, Ian L; Bagchi, Sreya; Yuan, Robert; Chang, Serena; Spitzer, Matthew H; Carmi, Yaron; Cheng, Jiahan; Tolentino, Lorna L; Choi, Okmi; Wu, Nancy; Kong, Christina S; Gentles, Andrew J; Sunwoo, John B; Satpathy, Ansuman T; Plevritis, Sylvia K; Engleman, Edgar G.

Cell ; 185(11): 1924-1942.e23, 2022 05 26.

Article in English | MEDLINE | ID: mdl-35525247

2.

p53 governs an AT1 differentiation programme in lung cancer suppression.

Kaiser, Alyssa M; Gatto, Alberto; Hanson, Kathryn J; Zhao, Richard L; Raj, Nitin; Ozawa, Michael G; Seoane, José A; Bieging-Rolett, Kathryn T; Wang, Mengxiong; Li, Irene; Trope, Winston L; Liou, Douglas Z; Shrager, Joseph B; Plevritis, Sylvia K; Newman, Aaron M; Van Rechem, Capucine; Attardi, Laura D.

Nature ; 619(7971): 851-859, 2023 Jul.

Article in English | MEDLINE | ID: mdl-37468633

3.

Organization of the human intestine at single-cell resolution.

Hickey, John W; Becker, Winston R; Nevins, Stephanie A; Horning, Aaron; Perez, Almudena Espin; Zhu, Chenchen; Zhu, Bokai; Wei, Bei; Chiu, Roxanne; Chen, Derek C; Cotter, Daniel L; Esplin, Edward D; Weimer, Annika K; Caraccio, Chiara; Venkataraaman, Vishal; Schürch, Christian M; Black, Sarah; Brbic, Maria; Cao, Kaidi; Chen, Shuxiao; Zhang, Weiruo; Monte, Emma; Zhang, Nancy R; Ma, Zongming; Leskovec, Jure; Zhang, Zhengyan; Lin, Shin; Longacre, Teri; Plevritis, Sylvia K; Lin, Yiing; Nolan, Garry P; Greenleaf, William J; Snyder, Michael.

Nature ; 619(7970): 572-584, 2023 Jul.

Article in English | MEDLINE | ID: mdl-37468586

4.

Identification of cell types in multiplexed in situ images by combining protein expression and spatial information using CELESTA.

Zhang, Weiruo; Li, Irene; Reticker-Flynn, Nathan E; Good, Zinaida; Chang, Serena; Samusik, Nikolay; Saumyaa, Saumyaa; Li, Yuanyuan; Zhou, Xin; Liang, Rachel; Kong, Christina S; Le, Quynh-Thu; Gentles, Andrew J; Sunwoo, John B; Nolan, Garry P; Engleman, Edgar G; Plevritis, Sylvia K.

Nat Methods ; 19(6): 759-769, 2022 06.

Article in English | MEDLINE | ID: mdl-35654951

5.

Visualization, benchmarking and characterization of nested single-cell heterogeneity as dynamic forest mixtures.

Anchang, Benedict; Mendez-Giraldez, Raul; Xu, Xiaojiang; Archer, Trevor K; Chen, Qing; Hu, Guang; Plevritis, Sylvia K; Motsinger-Reif, Alison Anne; Li, Jian-Liang.

Brief Bioinform ; 23(2)2022 03 10.

Article in English | MEDLINE | ID: mdl-35192692

6.

Risk Model-Based Lung Cancer Screening : A Cost-Effectiveness Analysis.

Toumazis, Iakovos; Cao, Pianpian; de Nijs, Koen; Bastani, Mehrad; Munshi, Vidit; Hemmati, Mehdi; Ten Haaf, Kevin; Jeon, Jihyoun; Tammemägi, Martin; Gazelle, G Scott; Feuer, Eric J; Kong, Chung Yin; Meza, Rafael; de Koning, Harry J; Plevritis, Sylvia K; Han, Summer S.

Ann Intern Med ; 176(3): 320-332, 2023 03.

Article in English | MEDLINE | ID: mdl-36745885

7.

Analysis of Breast Cancer Mortality in the US-1975 to 2019.

Caswell-Jin, Jennifer L; Sun, Liyang P; Munoz, Diego; Lu, Ying; Li, Yisheng; Huang, Hui; Hampton, John M; Song, Juhee; Jayasekera, Jinani; Schechter, Clyde; Alagoz, Oguzhan; Stout, Natasha K; Trentham-Dietz, Amy; Lee, Sandra J; Huang, Xuelin; Mandelblatt, Jeanne S; Berry, Donald A; Kurian, Allison W; Plevritis, Sylvia K.

JAMA ; 331(3): 233-241, 2024 01 16.

Article in English | MEDLINE | ID: mdl-38227031

8.

Collaborative Modeling to Compare Different Breast Cancer Screening Strategies: A Decision Analysis for the US Preventive Services Task Force.

Trentham-Dietz, Amy; Chapman, Christina Hunter; Jayasekera, Jinani; Lowry, Kathryn P; Heckman-Stoddard, Brandy M; Hampton, John M; Caswell-Jin, Jennifer L; Gangnon, Ronald E; Lu, Ying; Huang, Hui; Stein, Sarah; Sun, Liyang; Gil Quessep, Eugenio J; Yang, Yuanliang; Lu, Yifan; Song, Juhee; Muñoz, Diego F; Li, Yisheng; Kurian, Allison W; Kerlikowske, Karla; O'Meara, Ellen S; Sprague, Brian L; Tosteson, Anna N A; Feuer, Eric J; Berry, Donald; Plevritis, Sylvia K; Huang, Xuelin; de Koning, Harry J; van Ravesteyn, Nicolien T; Lee, Sandra J; Alagoz, Oguzhan; Schechter, Clyde B; Stout, Natasha K; Miglioretti, Diana L; Mandelblatt, Jeanne S.

JAMA ; 331(22): 1947-1960, 2024 Jun 11.

Article in English | MEDLINE | ID: mdl-38687505

9.

Reflecting on 20 years of breast cancer modeling in CISNET: Recommendations for future cancer systems modeling efforts.

Trentham-Dietz, Amy; Alagoz, Oguzhan; Chapman, Christina; Huang, Xuelin; Jayasekera, Jinani; van Ravesteyn, Nicolien T; Lee, Sandra J; Schechter, Clyde B; Yeh, Jennifer M; Plevritis, Sylvia K; Mandelblatt, Jeanne S.

PLoS Comput Biol ; 17(6): e1009020, 2021 06.

Article in English | MEDLINE | ID: mdl-34138842

10.

A risk-based framework for assessing real-time lung cancer screening eligibility that incorporates life expectancy and past screening findings.

Toumazis, Iakovos; Alagoz, Oguzhan; Leung, Ann; Plevritis, Sylvia K.

Cancer ; 127(23): 4432-4446, 2021 Dec 01.

Article in English | MEDLINE | ID: mdl-34383299

11.

DRUG-NEM: Optimizing drug combinations using single-cell perturbation response to account for intratumoral heterogeneity.

Anchang, Benedict; Davis, Kara L; Fienberg, Harris G; Williamson, Brian D; Bendall, Sean C; Karacosta, Loukia G; Tibshirani, Robert; Nolan, Garry P; Plevritis, Sylvia K.

Proc Natl Acad Sci U S A ; 115(18): E4294-E4303, 2018 05 01.

Article in English | MEDLINE | ID: mdl-29654148

12.

Evaluation of the Benefits and Harms of Lung Cancer Screening With Low-Dose Computed Tomography: Modeling Study for the US Preventive Services Task Force.

Meza, Rafael; Jeon, Jihyoun; Toumazis, Iakovos; Ten Haaf, Kevin; Cao, Pianpian; Bastani, Mehrad; Han, Summer S; Blom, Erik F; Jonas, Daniel E; Feuer, Eric J; Plevritis, Sylvia K; de Koning, Harry J; Kong, Chung Yin.

JAMA ; 325(10): 988-997, 2021 03 09.

Article in English | MEDLINE | ID: mdl-33687469

13.

Correction: Risk prediction models for selection of lung cancer screening candidates: A retrospective validation study.

Ten Haaf, Kevin; Jeon, Jihyoun; Tammemägi, Martin C; Han, Summer S; Kong, Chung Yin; Plevritis, Sylvia K; Feuer, Eric J; de Koning, Harry J; Steyerberg, Ewout W; Meza, Rafael.

PLoS Med ; 17(9): e1003403, 2020 Sep.

Article in English | MEDLINE | ID: mdl-32976487

14.

Cost-Effectiveness Analysis of Lung Cancer Screening in the United States: A Comparative Modeling Study.

Criss, Steven D; Cao, Pianpian; Bastani, Mehrad; Ten Haaf, Kevin; Chen, Yufan; Sheehan, Deirdre F; Blom, Erik F; Toumazis, Iakovos; Jeon, Jihyoun; de Koning, Harry J; Plevritis, Sylvia K; Meza, Rafael; Kong, Chung Yin.

Ann Intern Med ; 171(11): 796-804, 2019 12 03.

Article in English | MEDLINE | ID: mdl-31683314

15.

US Breast Cancer Mortality-Reply.

Caswell-Jin, Jennifer L; Kurian, Allison W; Plevritis, Sylvia K.

JAMA ; 331(19): 1679-1680, 2024 05 21.

Article in English | MEDLINE | ID: mdl-38662394

16.

Non-Small Cell Lung Cancer Radiogenomics Map Identifies Relationships between Molecular and Imaging Phenotypes with Prognostic Implications.

Zhou, Mu; Leung, Ann; Echegaray, Sebastian; Gentles, Andrew; Shrager, Joseph B; Jensen, Kristin C; Berry, Gerald J; Plevritis, Sylvia K; Rubin, Daniel L; Napel, Sandy; Gevaert, Olivier.

Radiology ; 286(1): 307-315, 2018 01.

Article in English | MEDLINE | ID: mdl-28727543

17.

Mutations in early follicular lymphoma progenitors are associated with suppressed antigen presentation.

Green, Michael R; Kihira, Shingo; Liu, Chih Long; Nair, Ramesh V; Salari, Raheleh; Gentles, Andrew J; Irish, Jonathan; Stehr, Henning; Vicente-Dueñas, Carolina; Romero-Camarero, Isabel; Sanchez-Garcia, Isidro; Plevritis, Sylvia K; Arber, Daniel A; Batzoglou, Serafim; Levy, Ronald; Alizadeh, Ash A.

Proc Natl Acad Sci U S A ; 112(10): E1116-25, 2015 Mar 10.

Article in English | MEDLINE | ID: mdl-25713363

18.

Association of Screening and Treatment With Breast Cancer Mortality by Molecular Subtype in US Women, 2000-2012.

Plevritis, Sylvia K; Munoz, Diego; Kurian, Allison W; Stout, Natasha K; Alagoz, Oguzhan; Near, Aimee M; Lee, Sandra J; van den Broek, Jeroen J; Huang, Xuelin; Schechter, Clyde B; Sprague, Brian L; Song, Juhee; de Koning, Harry J; Trentham-Dietz, Amy; van Ravesteyn, Nicolien T; Gangnon, Ronald; Chandler, Young; Li, Yisheng; Xu, Cong; Ergun, Mehmet Ali; Huang, Hui; Berry, Donald A; Mandelblatt, Jeanne S.

JAMA ; 319(2): 154-164, 2018 01 09.

Article in English | MEDLINE | ID: mdl-29318276

19.

The impact of overdiagnosis on the selection of efficient lung cancer screening strategies.

Han, Summer S; Ten Haaf, Kevin; Hazelton, William D; Munshi, Vidit N; Jeon, Jihyoun; Erdogan, Saadet A; Johanson, Colden; McMahon, Pamela M; Meza, Rafael; Kong, Chung Yin; Feuer, Eric J; de Koning, Harry J; Plevritis, Sylvia K.

Int J Cancer ; 140(11): 2436-2443, 2017 06 01.

Article in English | MEDLINE | ID: mdl-28073150

20.

Risk prediction models for selection of lung cancer screening candidates: A retrospective validation study.