Search details
1.
Improving replicability in single-cell RNA-Seq cell type discovery with Dune.
BMC Bioinformatics
; 25(1): 198, 2024 May 24.
Article
in English
| MEDLINE | ID: mdl-38789920
2.
Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression.
Mol Ecol
; 32(10): 2674-2687, 2023 05.
Article
in English
| MEDLINE | ID: mdl-35000239
3.
mbkmeans: Fast clustering for single cell data using mini-batch k-means.
PLoS Comput Biol
; 17(1): e1008625, 2021 01.
Article
in English
| MEDLINE | ID: mdl-33497379
4.
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses.
Proc Natl Acad Sci U S A
; 116(52): 27124-27132, 2019 Dec 26.
Article
in English
| MEDLINE | ID: mdl-31806758
5.
A Tetrahymena Piwi bound to mature tRNA 3' fragments activates the exonuclease Xrn2 for RNA processing in the nucleus.
Mol Cell
; 48(4): 509-20, 2012 Nov 30.
Article
in English
| MEDLINE | ID: mdl-23084833
6.
clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.
PLoS Comput Biol
; 14(9): e1006378, 2018 09.
Article
in English
| MEDLINE | ID: mdl-30180157
7.
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.
BMC Genomics
; 19(1): 477, 2018 Jun 19.
Article
in English
| MEDLINE | ID: mdl-29914354
8.
Clustering of mRNA-Seq data based on alternative splicing patterns.
Biostatistics
; 18(2): 295-307, 2017 04 01.
Article
in English
| MEDLINE | ID: mdl-27780810
9.
Phylogenetic analyses of melanoma reveal complex patterns of metastatic dissemination.
Proc Natl Acad Sci U S A
; 112(35): 10995-1000, 2015 Sep 01.
Article
in English
| MEDLINE | ID: mdl-26286987
10.
Subtype and pathway specific responses to anticancer compounds in breast cancer.
Proc Natl Acad Sci U S A
; 109(8): 2724-9, 2012 Feb 21.
Article
in English
| MEDLINE | ID: mdl-22003129
11.
Methods and challenges in timing chromosomal abnormalities within cancer samples.
Bioinformatics
; 29(24): 3113-20, 2013 Dec 15.
Article
in English
| MEDLINE | ID: mdl-24064421
12.
A single-cell atlas of IL-23 inhibition in cutaneous psoriasis distinguishes clinical response.
Sci Immunol
; 9(91): eadi2848, 2024 Jan 26.
Article
in English
| MEDLINE | ID: mdl-38277466
13.
Visualizing scRNA-Seq Data at Population Scale with GloScope.
bioRxiv
; 2023 Jun 01.
Article
in English
| MEDLINE | ID: mdl-37398321
14.
A Latent Activated Olfactory Stem Cell State Revealed by Single Cell Transcriptomic and Epigenomic Profiling.
bioRxiv
; 2023 Oct 31.
Article
in English
| MEDLINE | ID: mdl-37961539
15.
Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities.
Nat Commun
; 13(1): 3867, 2022 07 05.
Article
in English
| MEDLINE | ID: mdl-35790741
16.
Defining Patient-Level Molecular Heterogeneity in Psoriasis Vulgaris Based on Single-Cell Transcriptomics.
Front Immunol
; 13: 842651, 2022.
Article
in English
| MEDLINE | ID: mdl-35958578
17.
Classification of human chronic inflammatory skin disease based on single-cell immune profiling.
Sci Immunol
; 7(70): eabl9165, 2022 04 15.
Article
in English
| MEDLINE | ID: mdl-35427179
18.
A single-cell transcriptional gradient in human cutaneous memory T cells restricts Th17/Tc17 identity.
Cell Rep Med
; 3(8): 100715, 2022 08 16.
Article
in English
| MEDLINE | ID: mdl-35977472
19.
Cobolt: integrative analysis of multimodal single-cell sequencing data.
Genome Biol
; 22(1): 351, 2021 12 28.
Article
in English
| MEDLINE | ID: mdl-34963480
20.
Cell Wall Compositions of Sorghum bicolor Leaves and Roots Remain Relatively Constant Under Drought Conditions.
Front Plant Sci
; 12: 747225, 2021.
Article
in English
| MEDLINE | ID: mdl-34868130