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1.
IDMIL: an alignment-free Interpretable Deep Multiple Instance Learning (MIL) for predicting disease from whole-metagenomic data.
Bioinformatics
; 36(Suppl_1): i39-i47, 2020 07 01.
Article
in English
| MEDLINE | ID: mdl-32657370
2.
EGGNet, a Generalizable Geometric Deep Learning Framework for Protein Complex Pose Scoring.
ACS Omega
; 9(7): 7471-7479, 2024 Feb 20.
Article
in English
| MEDLINE | ID: mdl-38405499
3.
Colonic microbiome is altered in alcoholism.
Am J Physiol Gastrointest Liver Physiol
; 302(9): G966-78, 2012 May 01.
Article
in English
| MEDLINE | ID: mdl-22241860
4.
Exploring county-level spatio-temporal patterns in opioid overdose related emergency department visits.
PLoS One
; 17(12): e0269509, 2022.
Article
in English
| MEDLINE | ID: mdl-36584000
5.
Evaluation of short read metagenomic assembly.
BMC Genomics
; 12 Suppl 2: S8, 2011.
Article
in English
| MEDLINE | ID: mdl-21989307
6.
Network-based modeling of the human gut microbiome.
Chem Biodivers
; 7(5): 1040-50, 2010 May.
Article
in English
| MEDLINE | ID: mdl-20491063
7.
Analysis of multitag pyrosequence data from human cervical lavage samples.
Chem Biodivers
; 7(5): 1076-85, 2010 May.
Article
in English
| MEDLINE | ID: mdl-20491067
8.
Phenotype Prediction from Metagenomic Data Using Clustering and Assembly with Multiple Instance Learning (CAMIL).
IEEE/ACM Trans Comput Biol Bioinform
; 17(3): 828-840, 2020.
Article
in English
| MEDLINE | ID: mdl-28981422
9.
svmPRAT: SVM-based protein residue annotation toolkit.
BMC Bioinformatics
; 10: 439, 2009 Dec 22.
Article
in English
| MEDLINE | ID: mdl-20028521
10.
Multi-assay-based structure-activity relationship models: improving structure-activity relationship models by incorporating activity information from related targets.
J Chem Inf Model
; 49(11): 2444-56, 2009 Nov.
Article
in English
| MEDLINE | ID: mdl-19842624
11.
fRMSDPred: predicting local RMSD between structural fragments using sequence information.
Proteins
; 72(3): 1005-18, 2008 Aug 15.
Article
in English
| MEDLINE | ID: mdl-18300251
12.
Incremental window-based protein sequence alignment algorithms.
Bioinformatics
; 23(2): e17-23, 2007 Jan 15.
Article
in English
| MEDLINE | ID: mdl-17237087
13.
Metagenome sequence clustering with hash-based canopies.
J Bioinform Comput Biol
; 15(6): 1740006, 2017 Dec.
Article
in English
| MEDLINE | ID: mdl-29113561
14.
Building multiclass classifiers for remote homology detection and fold recognition.
BMC Bioinformatics
; 7: 455, 2006 Oct 16.
Article
in English
| MEDLINE | ID: mdl-17042943
15.
Real-time, ultrasound-based control of a virtual hand by a trans-radial amputee.
Annu Int Conf IEEE Eng Med Biol Soc
; 2016: 3219-3222, 2016 Aug.
Article
in English
| MEDLINE | ID: mdl-28268993
16.
Real-Time Classification of Hand Motions Using Ultrasound Imaging of Forearm Muscles.
IEEE Trans Biomed Eng
; 63(8): 1687-98, 2016 08.
Article
in English
| MEDLINE | ID: mdl-26560865
17.
Predicting Protein Function Using Multiple Kernels.
IEEE/ACM Trans Comput Biol Bioinform
; 12(1): 219-33, 2015.
Article
in English
| MEDLINE | ID: mdl-26357091
18.
Classification methods for the analysis of LH-PCR data associated with inflammatory bowel disease patients.
Int J Bioinform Res Appl
; 11(2): 111-29, 2015.
Article
in English
| MEDLINE | ID: mdl-25786791
19.
Classifying Protein Sequences Using Regularized Multi-Task Learning.
IEEE/ACM Trans Comput Biol Bioinform
; 11(6): 1087-98, 2014.
Article
in English
| MEDLINE | ID: mdl-26357046
20.
Protein Function Prediction with Incomplete Annotations.
IEEE/ACM Trans Comput Biol Bioinform
; 11(3): 579-91, 2014.
Article
in English
| MEDLINE | ID: mdl-26356025