A comparative study of machine learning and deep learning algorithms to classify cancer types based on microarray gene expression data.

Cancer classification is a topic of major interest in medicine since it allows accurate and efficient diagnosis and facilitates a successful outcome in medical treatments. Previous studies have classified human tumors using a large-scale RNA profiling and supervised Machine Learning (ML) algorithms to construct a molecular-based classification of carcinoma cells from breast, bladder, adenocarcinoma, colorectal, gastro esophagus, kidney, liver, lung, ovarian, pancreas, and prostate tumors. These datasets are collectively known as the 11_tumor database, although this database has been used in several works in the ML field, no comparative studies of different algorithms can be found in the literature. On the other hand, advances in both hardware and software technologies have fostered considerable improvements in the precision of solutions that use ML, such as Deep Learning (DL). In this study, we compare the most widely used algorithms in classical ML and DL to classify the tumors described in the 11_tumor database. We obtained tumor identification accuracies between 90.6% (Logistic Regression) and 94.43% (Convolutional Neural Networks) using k-fold cross-validation. Also, we show how a tuning process may or may not significantly improve algorithms' accuracies. Our results demonstrate an efficient and accurate classification method based on gene expression (microarray data) and ML/DL algorithms, which facilitates tumor type prediction in a multi-cancer-type scenario.

Unsupervised classification of atrial heartbeats using a prematurity index and wave morphology features.

ECG heartbeat type detection and classification are regarded as important procedures since they can significantly help to provide an accurate automated diagnosis. This paper addresses the specific problem of detecting atrial premature beats, that had been demonstrated to be a marker for stroke risk or cardiac arrhythmias. The proposed methodology consists of a stage to estimate characteristics such as morphology of P wave and QRS complex as well as indices of prematurity and a non-supervised stage used by the algorithm J-means to separate heartbeat feature vectors into classes. Partition initialization is carried out by a Max-Min approach. Experimental data set is taken from MIT-BIH arrhythmia database. Results evidence the reliability of the method since achieved sensitivity and specificity are high, 92.9 and 99.6%, respectively, for an average output number of 12 discovered clusters that can be considered as appropriate value to separate heartbeat classes from recordings.