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1.

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.

Mallick, Swapan; Li, Heng; Lipson, Mark; Mathieson, Iain; Gymrek, Melissa; Racimo, Fernando; Zhao, Mengyao; Chennagiri, Niru; Nordenfelt, Susanne; Tandon, Arti; Skoglund, Pontus; Lazaridis, Iosif; Sankararaman, Sriram; Fu, Qiaomei; Rohland, Nadin; Renaud, Gabriel; Erlich, Yaniv; Willems, Thomas; Gallo, Carla; Spence, Jeffrey P; Song, Yun S; Poletti, Giovanni; Balloux, Francois; van Driem, George; de Knijff, Peter; Romero, Irene Gallego; Jha, Aashish R; Behar, Doron M; Bravi, Claudio M; Capelli, Cristian; Hervig, Tor; Moreno-Estrada, Andres; Posukh, Olga L; Balanovska, Elena; Balanovsky, Oleg; Karachanak-Yankova, Sena; Sahakyan, Hovhannes; Toncheva, Draga; Yepiskoposyan, Levon; Tyler-Smith, Chris; Xue, Yali; Abdullah, M Syafiq; Ruiz-Linares, Andres; Beall, Cynthia M; Di Rienzo, Anna; Jeong, Choongwon; Starikovskaya, Elena B; Metspalu, Ene; Parik, Jüri; Villems, Richard.

Nature ; 538(7624): 201-206, 2016 Oct 13.

Article in English | MEDLINE | ID: mdl-27654912

2.

Impact of regulatory variation across human iPSCs and differentiated cells.

Banovich, Nicholas E; Li, Yang I; Raj, Anil; Ward, Michelle C; Greenside, Peyton; Calderon, Diego; Tung, Po Yuan; Burnett, Jonathan E; Myrthil, Marsha; Thomas, Samantha M; Burrows, Courtney K; Romero, Irene Gallego; Pavlovic, Bryan J; Kundaje, Anshul; Pritchard, Jonathan K; Gilad, Yoav.

Genome Res ; 28(1): 122-131, 2018 01.

Article in English | MEDLINE | ID: mdl-29208628

3.

Comparative studies of gene expression and the evolution of gene regulation.

Romero, Irene Gallego; Ruvinsky, Ilya; Gilad, Yoav.

Nat Rev Genet ; 13(7): 505-16, 2012 Jun 18.

Article in English | MEDLINE | ID: mdl-22705669

4.

Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia.

Metspalu, Mait; Romero, Irene Gallego; Yunusbayev, Bayazit; Chaubey, Gyaneshwer; Mallick, Chandana Basu; Hudjashov, Georgi; Nelis, Mari; Mägi, Reedik; Metspalu, Ene; Remm, Maido; Pitchappan, Ramasamy; Singh, Lalji; Thangaraj, Kumarasamy; Villems, Richard; Kivisild, Toomas.

Am J Hum Genet ; 89(6): 731-44, 2011 Dec 09.

Article in English | MEDLINE | ID: mdl-22152676

5.

Evolution of the pygmy phenotype: evidence of positive selection fro genome-wide scans in African, Asian, and Melanesian pygmies.

Migliano, Andrea Bamberg; Romero, Irene Gallego; Metspalu, Mait; Leavesley, Matthew; Pagani, Luca; Antao, Tiago; Huang, Da-Wei; Sherman, Brad T; Siddle, Katharine; Scholes, Clarissa; Hudjashov, Georgi; Kaitokai, Elton; Babalu, Avis; Belatti, Maggie; Cagan, Alex; Hopkinshaw, Byrony; Shaw, Colin; Nelis, Mari; Metspalu, Ene; Mägi, Reedik; Lempicki, Richard A; Villems, Richard; Lahr, Marta Mirazon; Kivisild, Toomas.

Hum Biol ; 85(1-3): 251-84, 2013.

Article in English | MEDLINE | ID: mdl-24297229

6.

Seeing humans through an evolutionary lens.

Romero, Irene Gallego.

Science ; 380(6643): 360-361, 2023 04 28.

Article in English | MEDLINE | ID: mdl-37104588

7.

Population genetic structure in Indian Austroasiatic speakers: the role of landscape barriers and sex-specific admixture.

Chaubey, Gyaneshwer; Metspalu, Mait; Choi, Ying; Mägi, Reedik; Romero, Irene Gallego; Soares, Pedro; van Oven, Mannis; Behar, Doron M; Rootsi, Siiri; Hudjashov, Georgi; Mallick, Chandana Basu; Karmin, Monika; Nelis, Mari; Parik, Jüri; Reddy, Alla Goverdhana; Metspalu, Ene; van Driem, George; Xue, Yali; Tyler-Smith, Chris; Thangaraj, Kumarasamy; Singh, Lalji; Remm, Maido; Richards, Martin B; Lahr, Marta Mirazon; Kayser, Manfred; Villems, Richard; Kivisild, Toomas.

Mol Biol Evol ; 28(2): 1013-24, 2011 Feb.

Article in English | MEDLINE | ID: mdl-20978040

8.

Exploration of signals of positive selection derived from genotype-based human genome scans using re-sequencing data.

Hu, Min; Ayub, Qasim; Guerra-Assunção, José Afonso; Long, Quan; Ning, Zemin; Huang, Ni; Romero, Irene Gallego; Mamanova, Lira; Akan, Pelin; Liu, Xin; Coffey, Alison J; Turner, Daniel J; Swerdlow, Harold; Burton, John; Quail, Michael A; Conrad, Donald F; Enright, Anton J; Tyler-Smith, Chris; Xue, Yali.

Hum Genet ; 131(5): 665-74, 2012 May.

Article in English | MEDLINE | ID: mdl-22057783

9.

Unique properties of a subset of human pluripotent stem cells with high capacity for self-renewal.

Lau, Kevin X; Mason, Elizabeth A; Kie, Joshua; De Souza, David P; Kloehn, Joachim; Tull, Dedreia; McConville, Malcolm J; Keniry, Andrew; Beck, Tamara; Blewitt, Marnie E; Ritchie, Matthew E; Naik, Shalin H; Zalcenstein, Daniela; Korn, Othmar; Su, Shian; Romero, Irene Gallego; Spruce, Catrina; Baker, Christopher L; McGarr, Tracy C; Wells, Christine A; Pera, Martin F.

Nat Commun ; 11(1): 2420, 2020 05 15.

Article in English | MEDLINE | ID: mdl-32415101

10.

Global diversity, population stratification, and selection of human copy-number variation.

Sudmant, Peter H; Mallick, Swapan; Nelson, Bradley J; Hormozdiari, Fereydoun; Krumm, Niklas; Huddleston, John; Coe, Bradley P; Baker, Carl; Nordenfelt, Susanne; Bamshad, Michael; Jorde, Lynn B; Posukh, Olga L; Sahakyan, Hovhannes; Watkins, W Scott; Yepiskoposyan, Levon; Abdullah, M Syafiq; Bravi, Claudio M; Capelli, Cristian; Hervig, Tor; Wee, Joseph T S; Tyler-Smith, Chris; van Driem, George; Romero, Irene Gallego; Jha, Aashish R; Karachanak-Yankova, Sena; Toncheva, Draga; Comas, David; Henn, Brenna; Kivisild, Toomas; Ruiz-Linares, Andres; Sajantila, Antti; Metspalu, Ene; Parik, Jüri; Villems, Richard; Starikovskaya, Elena B; Ayodo, George; Beall, Cynthia M; Di Rienzo, Anna; Hammer, Michael F; Khusainova, Rita; Khusnutdinova, Elza; Klitz, William; Winkler, Cheryl; Labuda, Damian; Metspalu, Mait; Tishkoff, Sarah A; Dryomov, Stanislav; Sukernik, Rem; Patterson, Nick; Reich, David.

Science ; 349(6253): aab3761, 2015 09 11.

Article in English | MEDLINE | ID: mdl-26249230

11.

Genome-wide analysis of cold adaptation in indigenous Siberian populations.

Cardona, Alexia; Pagani, Luca; Antao, Tiago; Lawson, Daniel J; Eichstaedt, Christina A; Yngvadottir, Bryndis; Shwe, Ma Than Than; Wee, Joseph; Romero, Irene Gallego; Raj, Srilakshmi; Metspalu, Mait; Villems, Richard; Willerslev, Eske; Tyler-Smith, Chris; Malyarchuk, Boris A; Derenko, Miroslava V; Kivisild, Toomas.

PLoS One ; 9(5): e98076, 2014.

Article in English | MEDLINE | ID: mdl-24847810

12.

A systematic survey of loss-of-function variants in human protein-coding genes.

MacArthur, Daniel G; Balasubramanian, Suganthi; Frankish, Adam; Huang, Ni; Morris, James; Walter, Klaudia; Jostins, Luke; Habegger, Lukas; Pickrell, Joseph K; Montgomery, Stephen B; Albers, Cornelis A; Zhang, Zhengdong D; Conrad, Donald F; Lunter, Gerton; Zheng, Hancheng; Ayub, Qasim; DePristo, Mark A; Banks, Eric; Hu, Min; Handsaker, Robert E; Rosenfeld, Jeffrey A; Fromer, Menachem; Jin, Mike; Mu, Xinmeng Jasmine; Khurana, Ekta; Ye, Kai; Kay, Mike; Saunders, Gary Ian; Suner, Marie-Marthe; Hunt, Toby; Barnes, If H A; Amid, Clara; Carvalho-Silva, Denise R; Bignell, Alexandra H; Snow, Catherine; Yngvadottir, Bryndis; Bumpstead, Suzannah; Cooper, David N; Xue, Yali; Romero, Irene Gallego; Wang, Jun; Li, Yingrui; Gibbs, Richard A; McCarroll, Steven A; Dermitzakis, Emmanouil T; Pritchard, Jonathan K; Barrett, Jeffrey C; Harrow, Jennifer; Hurles, Matthew E; Gerstein, Mark B.

Science ; 335(6070): 823-8, 2012 Feb 17.

Article in English | MEDLINE | ID: mdl-22344438

13.

Traces of sub-Saharan and Middle Eastern lineages in Indian Muslim populations.

Eaaswarkhanth, Muthukrishnan; Haque, Ikramul; Ravesh, Zeinab; Romero, Irene Gallego; Meganathan, Poorlin Ramakodi; Dubey, Bhawna; Khan, Faizan Ahmed; Chaubey, Gyaneshwer; Kivisild, Toomas; Tyler-Smith, Chris; Singh, Lalji; Thangaraj, Kumarasamy.

Eur J Hum Genet ; 18(3): 354-63, 2010 Mar.

Article in English | MEDLINE | ID: mdl-19809480

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