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1.
Bioconjug Chem ; 33(9): 1750-1760, 2022 Sep 21.
Article in English | MEDLINE | ID: mdl-35946495

ABSTRACT

The synthesis of radioimmunoconjugates via the stochastic attachment of bifunctional chelators to lysines can yield heterogeneous products with suboptimal in vitro and in vivo behavior. In response to this, several site-selective approaches to bioconjugation have been developed, yet each has intrinsic drawbacks, such as the need for expensive reagents or the complexity of incorporating unnatural amino acids into IgGs. Herein, we describe the use of a simple and facile approach to lysine-directed site-selective bioconjugation for the generation of radioimmunoconjugates. This strategy relies upon on the selective modification of single lysine residues within each light chain of the monoclonal antibody (mAb) with a branched azide-bearing perfluorophenyl ester (PFP-bisN3) followed by the ligation of dibenzocyclooctyne (DBCO)-bearing payloads to these bioorthogonal handles via the strain-promoted azide-alkyne cycloaddition. This methodology was used to create [89Zr]Zr-SSKDFO-pertuzumab, a radioimmunoconjugate of the HER2-targeting mAb pertuzumab labeled with desferrioxamine (DFO) and the positron-emitting radiometal zirconium-89 (89Zr). [89Zr]Zr-SSKDFO-pertuzumab was compared to a pair of analogous probes: one synthesized via random lysine modification ([89Zr]Zr-DFO-pertuzumab) and another via thiol-maleimide chemistry ([89Zr]Zr-malDFO-pertuzumab). The bioconjugation strategy was assessed using ESI mass spectrometry, SDS-PAGE, and autoradiography. All three immunoconjugates demonstrated comparable binding to HER2 via flow cytometry and surface plasmon resonance (SPR), and 89Zr-labeled variants of each were synthesized in >99% radiochemical yield and molar activities of up to ∼55.5 GBq/µmol (10 mCi/mg). Subsequently, the in vivo behavior of this trio of 89Zr-immunoPET probes was interrogated in athymic nude mice bearing subcutaneous HER2-expressing BT-474 human breast cancer xenografts. [89Zr]Zr-SSKDFO-pertuzumab, [89Zr]Zr-malDFO-pertuzumab, and [89Zr]Zr-DFO-pertuzumab produced positron emission tomography (PET) images with high tumoral uptake and high tumor-to-healthy organ activity concentration ratios. A terminal biodistribution study complemented the PET results, revealing tumoral activity concentrations of 126.9 ± 50.3%ID/g, 86.9 ± 53.2%ID/g, and 92.5 ± 27.2%ID/g at 144 h post-injection for [89Zr]Zr-SSKDFO-pertuzumab, [89Zr]Zr-malDFO-pertuzumab, and [89Zr]Zr-DFO-pertuzumab, respectively. Taken together, the data clearly illustrate that this highly modular and facile approach to site-selective bioconjugation produces radioimmunoconjugates that are better-defined and more homogeneous than stochastically modified constructs and also exhibit excellent in vitro and in vivo performance. Furthermore, we contend that this lysine-directed strategy holds several key advantages over extant approaches to site-selective bioconjugation, especially in the context of production for the clinic.


Subject(s)
Breast Neoplasms , Immunoconjugates , Alkynes , Animals , Antibodies, Monoclonal/chemistry , Azides , Cell Line, Tumor , Chelating Agents , Deferoxamine/chemistry , Esters , Female , Humans , Immunoconjugates/chemistry , Lysine , Maleimides , Mice , Mice, Nude , Positron-Emission Tomography/methods , Sulfhydryl Compounds , Tissue Distribution , Zirconium/chemistry
2.
J Biol Chem ; 287(48): 40745-57, 2012 Nov 23.
Article in English | MEDLINE | ID: mdl-23043102

ABSTRACT

BACKGROUND: Store-operated Ca(2+) entry is important for cell migration. RESULTS: This study presents characterization of localization and roles of Orai1, STIM1, and PLA2g6 in adhesion dynamics during cell migration. CONCLUSION: Orai1 and PLA2g6 are involved in adhesion formation at the front, whereas STIM1 participates in both adhesion formation and disassembly. SIGNIFICANCE: Results uncovered new parameters of Orai1, STIM1, and PLA2g6 involvement in cell migration. Store-operated Ca(2+) entry and its major determinants are known to be important for cell migration, but the mechanism of their involvement in this complex process is unknown. This study presents a detailed characterization of distinct roles of Orai1, STIM1, and PLA2g6 in focal adhesion (FA) formation and migration. Using HEK293 cells, we discovered that although molecular knockdown of Orai1, STIM1, or PLA2g6 resulted in a similar reduction in migration velocity, there were profound differences in their effects on number, localization, and lifetime of FAs. Knockdown of STIM1 caused an increase in lifetime and number of FAs, their redistribution toward lamellae region, and an increase in cell tail length. In contrast, the number of FAs in Orai1- or PLA2g6-deficient cells was significantly reduced, and FAs accumulated closer to the leading edge. Assembly rate and Vinculin phosphorylation of FAs was similarly reduced in Orai1, PLA2g6, or STIM1-deficient cells. Although Orai1 and PLA2g6 accumulated and co-localized at the leading edge, STIM1 distribution was more complex. We found STIM1 protrusions in lamellipodia, which co-localized with FAs, whereas major accumulation could be seen in central and retracting parts of the cell. Interestingly, knockdown of Orai1 and PLA2g6 produced similar and non-additive effect on migration, whereas knockdown of STIM1 simultaneously with either Orai1 or PLA2g6 produced additional inhibition. Together these data suggest that although Orai1, PLA2g6, and STIM1 play major roles in formation of new FAs at the leading edge, STIM1 may also be involved in Orai1- and PLA2g6-independent disassembly of FAs in the back of cells.


Subject(s)
Calcium Channels/metabolism , Cell Movement , Focal Adhesions/metabolism , Membrane Proteins/metabolism , Neoplasm Proteins/metabolism , Phospholipases A2/metabolism , Calcium/metabolism , Calcium Channels/genetics , Focal Adhesions/genetics , HEK293 Cells , Humans , Membrane Proteins/genetics , Neoplasm Proteins/genetics , ORAI1 Protein , Phospholipases A2/genetics , Stromal Interaction Molecule 1
3.
Biol Chem ; 393(6): 457-71, 2012 May.
Article in English | MEDLINE | ID: mdl-22628309

ABSTRACT

Ecdysteroids coordinate essential biological processes in Drosophila through a complex of two nuclear receptors, the ecdysteroid receptor (EcR) and the ultraspiracle protein (Usp). Biochemical experiments have shown that, in contrast to Usp, the EcR molecule is characterized by high intramolecular plasticity. To investigate whether this plasticity is sufficient to form EcR complexes with nuclear receptors other than Usp, we studied the interaction of EcR with the DHR38 nuclear receptor. Previous in vitro experiments suggested that DHR38 can form complexes with Usp and thus disrupt Usp-EcR interaction with the specific hsp27pal response element. This article provides the experimental evidence that EcR is able to form complexes with DHR38 as well. The recombinant DNA-binding domains (DBDs) of EcR and DHR38 interact specifically on hsp27pal. However, the interaction between the receptors is not restricted to their isolated DBDs. We pre\xadsent data that indicate that the full-length EcR and DHR38 can also form specific complexes within the nuclei of living cells. This interaction is mediated by the hinge region of EcR, which was recently classified as an intrinsically disordered region. Our results indicate that DHR38 might modulate the activity of the Usp-EcR heterodimer by forming complexes with both of its components.


Subject(s)
Drosophila Proteins/metabolism , Receptors, Cytoplasmic and Nuclear/metabolism , Receptors, Steroid/metabolism , Amino Acid Sequence , Animals , Base Sequence , Cell Line , Cell Survival , DNA/genetics , DNA/metabolism , Drosophila Proteins/chemistry , Drosophila melanogaster/cytology , Drosophila melanogaster/metabolism , HSP27 Heat-Shock Proteins/genetics , Humans , Molecular Sequence Data , Promoter Regions, Genetic/genetics , Protein Binding , Protein Structure, Tertiary , Receptors, Cytoplasmic and Nuclear/chemistry , Receptors, Steroid/chemistry , Substrate Specificity
4.
Proteins ; 79(2): 376-92, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21064127

ABSTRACT

Drosophila hormone receptor 38 (dHR38), an ortholog of the vertebrate NR4A subclass of nuclear receptors, responds to ecdysteroids, which mediate developmental transitions during the Drosophila life cycle. However, this response is independent of the ecdysteroid receptor, and it does not involve binding of ecdysteroids to dHR38. It has been suggested that ecdysteroids may indirectly activate dHR38, perhaps by recruiting specific proteins. There have been recent reports pointing out the decisive role that nuclear receptor N-terminal domains (NTDs) have in protein-protein interactions that are important for regulation of gene expression. It is reasonable to assume that dHR38-NTD may also be involved in some protein-protein interactions that are critical for the ecdysteroid signaling pathway. To facilitate the exploration of the molecular basis of these interactions, we developed and optimized a protocol for the efficient expression and purification of the recombinant dHR38-NTD. Using a diverse array of biochemical and biophysical methods, we carried out the first structural characterization of dHR38-NTD. The results of our study indicate that dHR38-NTD exhibits a characteristic reminiscent of pre-molten globule-like intrinsically disordered proteins existing in a partially unfolded conformation with regions of secondary structures. The dHR38-NTD structure, which apparently comprises some local, ordered, tertiary structure clusters, is pliable and can adopt more ordered conformations in response to changes in environmental conditions. Thus, dHR38-NTD, which exhibits the structural and functional characteristic of a pre-molten globule-like intrinsically disordered protein, could serve as a platform for multiple protein-protein interactions, possibly including interactions with proteins involved in an unusual ecdysteroid signaling pathway.


Subject(s)
Drosophila Proteins/chemistry , Receptors, Cytoplasmic and Nuclear/chemistry , Recombinant Proteins/chemistry , Amino Acid Sequence , Circular Dichroism , Computer Simulation , Drosophila Proteins/biosynthesis , Drosophila Proteins/isolation & purification , Fluorometry , Guanidine/chemistry , Hydrodynamics , Molecular Sequence Data , Phosphorylation , Protein Denaturation , Protein Folding , Protein Structure, Secondary , Protein Structure, Tertiary , Protein Unfolding , Receptors, Cytoplasmic and Nuclear/biosynthesis , Receptors, Cytoplasmic and Nuclear/isolation & purification , Recombinant Proteins/biosynthesis , Recombinant Proteins/isolation & purification , Trifluoroethanol/chemistry
5.
Biochim Biophys Acta ; 1779(6-7): 390-401, 2008.
Article in English | MEDLINE | ID: mdl-18515113

ABSTRACT

The juvenile hormone binding protein (JHBP) plays a key role in the protection and transport of the hormone to target tissues. In this report the sequence of the jhbp promoter comprising about 2000 bp is characterized. Using a minimized false positive algorithm, six putative regulatory elements, Hunchback, Heat shock factor binding element, Ultrabithorax, Broad-Complex Z3, Elf-1 and Chorion factor 1/ultraspiracle (CF1/Usp) were found in the distal promoter of the jhbp gene. Proteins from nuclear extract of Galleria mellonella fat body form four specific complexes with probe containing TATA box, five complexes with Inr probe and one protein complex with DPE probe. EMSA and footprinting analyses showed that one of the three CF1/Usp elements (starting at -1053) has an exceptionally high affinity to Usp protein. An unknown, high-affinity Usp/EcRDBD-binding element (TCAACA-AAC-TGTTCA), distinct from 20-hydroxyecdysone response elements, was identified in the jhbp gene promoter, based on a footprinting assay. Deletions of jhbp promoter in the regions containing the CF1/Usp elements enhance the transcriptional activity of luciferase reporter gene in the Trichoplusia ni High Five cell line. Obtained data suggest that jhbp promoter is TATA- and Inr-driven, CF1/Usp elements exhibit inhibitory effect on jhbp expression, and an interaction between Usp and DNA relies on recognition of the consensus sequence (GGGTCA) and on ionic interactions of several phosphate groups outside from this element.


Subject(s)
Carrier Proteins/genetics , DNA-Binding Proteins/metabolism , Genes, Insect , Insect Proteins/genetics , Juvenile Hormones/metabolism , Moths/genetics , Moths/metabolism , Receptors, Steroid/metabolism , Transcription Factors/metabolism , Animals , Base Sequence , Binding Sites/genetics , DNA/genetics , DNA/metabolism , DNA-Binding Proteins/genetics , Drosophila Proteins , Manduca/genetics , Manduca/metabolism , Molecular Sequence Data , Multiprotein Complexes , Promoter Regions, Genetic , Receptors, Steroid/genetics , Regulatory Elements, Transcriptional , Species Specificity , TATA Box , Transcription Factors/genetics
6.
Proteins ; 76(2): 291-308, 2009 Aug 01.
Article in English | MEDLINE | ID: mdl-19156821

ABSTRACT

The Drosophila melanogaster ecdysteroid receptor (EcR) is a member of the nuclear hormone receptor superfamily. EcR controls animal development and metamorphosis by activating or repressing the transcription of target genes. There are three EcR isoforms, EcRA, EcRB1, and EcRB2 that exhibit diverse spatial and temporal distributions within various tissues and reveal essential functional differences. These differences can be attributed to the isoform-specific N-terminal domains (NTDs), which differ in length and primary structure. To lay a foundation for understanding of the molecular mechanism underlying functional diversity of the isoforms, we have carried out a comprehensive biochemical and biophysical analysis of purified hexahistidine-tagged EcRA and EcRB1 NTDs (EcRA-NTD and EcRB1-NTD). The results, along with in silico examinations of the primary structures indicate that the EcR NTDs exhibit properties of premolten globule-like intrinsically disordered proteins. Furthermore, we demonstrate for the first time that NTDs of isoforms of a particular nuclear hormone receptor exhibit distinct structural properties. In silico analysis revealed that the EcRA-NTD sequence has a bigger tendency for disorder than the EcRB1-NTD sequence. Accordingly, the circular dichroism experiments demonstrated that EcRA-NTD has lower regular secondary structure content than EcRB1-NTD and the size-exclusion chromatography showed that EcRA-NTD is less compact than EcRB1-NTD. Furthermore, the limited proteolysis analysis revealed that the C-terminal region common to both NTDs is more susceptible to the enzymatic cleavage in EcRA-NTD than in EcRB1-NTD. We postulate that unique conformational states of EcRA-NTD and EcRB1-NTD might act as the starting points for the functional diversity of EcRA and EcRB1 isoforms.


Subject(s)
Drosophila Proteins/chemistry , Receptors, Steroid/chemistry , Animals , Circular Dichroism , Drosophila Proteins/genetics , Drosophila Proteins/isolation & purification , Drosophila Proteins/metabolism , Drosophila melanogaster/metabolism , Protein Conformation , Protein Isoforms/chemistry , Protein Isoforms/genetics , Protein Isoforms/metabolism , Protein Structure, Tertiary , Receptors, Steroid/genetics , Receptors, Steroid/isolation & purification , Receptors, Steroid/metabolism
7.
Biomacromolecules ; 9(8): 2118-25, 2008 Aug.
Article in English | MEDLINE | ID: mdl-18636772

ABSTRACT

Fish otoliths composed of calcium carbonate and an organic matrix play a primary role in gravity sensing and the perception of sound. Starmaker (Stm) was the first protein found to be capable of influencing the process of biomineralization of otoliths. Stm dictates the shape, size, and selection of calcium carbonate polymorphs in a concentration-dependent manner. To facilitate exploration of the molecular basis of Stm function, we have developed and optimized a protocol for efficient expression and purification of the homogeneous nontagged Stm. The homogeneous nontagged Stm corresponds to its functional form, which is devoid of a signal peptide. A comprehensive biochemical and biophysical analysis of recombinant Stm, along with in silico examinations, indicate for the first time that Stm exhibits the properties of intrinsically disordered proteins. The functional significance of Stm having intrinsically disordered protein properties and its possible role in controlling the formation of otoliths is discussed.


Subject(s)
Otolithic Membrane/physiology , Zebrafish Proteins/chemistry , Animals , Biophysics/methods , Calcium Carbonate/chemistry , Dose-Response Relationship, Drug , Fishes , Genetic Vectors , Protein Conformation , Protein Sorting Signals , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Spectrometry, Mass, Electrospray Ionization/methods , Spectrophotometry, Ultraviolet/methods , Zebrafish
8.
Mol Cancer Res ; 15(6): 753-764, 2017 06.
Article in English | MEDLINE | ID: mdl-28184013

ABSTRACT

Tyro3, Axl, and Mertk (collectively TAM receptors) are three homologous receptor tyrosine kinases that bind vitamin K-dependent endogenous ligands, Protein S (ProS), and growth arrest-specific factor 6 (Gas6), and act as bridging molecules to promote phosphatidylserine (PS)-mediated clearance of apoptotic cells (efferocytosis). TAM receptors are overexpressed in a vast array of tumor types, whereby the level of expression correlates with the tumor grade and the emergence of chemo- and radioresistance to targeted therapeutics, but also have been implicated as inhibitory receptors on infiltrating myeloid-derived cells in the tumor microenvironment that can suppress host antitumor immunity. In the present study, we utilized TAM-IFNγR1 reporter lines and expressed TAM receptors in a variety of epithelial cell model systems to show that each TAM receptor has a unique pattern of activation by Gas6 or ProS, as well as unique dependency for PS on apoptotic cells and PS liposomes for activity. In addition, we leveraged this system to engineer epithelial cells that express wild-type TAM receptors and show that although each receptor can promote PS-mediated efferocytosis, AKT-mediated chemoresistance, as well as upregulate the immune checkpoint molecule PD-L1 on tumor cells, Mertk is most dominant in the aforementioned pathways. Functionally, TAM receptor-mediated efferocytosis could be partially blocked by PS-targeting antibody 11.31 and Annexin V, demonstrating the existence of a PS/PS receptor (i.e., TAM receptor)/PD-L1 axis that operates in epithelial cells to foster immune escape. These data provide a rationale that PS-targeting, anti-TAM receptor, and anti-PD-L1-based therapeutics will have merit as combinatorial checkpoint inhibitors.Implications: Many tumor cells are known to upregulate the immune checkpoint inhibitor PD-L1. This study demonstrates a role for PS and TAM receptors in the regulation of PD-L1 on cancer cells. Mol Cancer Res; 15(6); 753-64. ©2017 AACR.


Subject(s)
B7-H1 Antigen/metabolism , Drug Resistance, Neoplasm/physiology , Phosphatidylserines/metabolism , Proto-Oncogene Proteins c-akt/metabolism , c-Mer Tyrosine Kinase/metabolism , B7-H1 Antigen/genetics , Cell Line, Tumor , Epithelial Cells/metabolism , Humans , Intercellular Signaling Peptides and Proteins/metabolism , Liposomes , Protein Domains , Protein S/metabolism , Proto-Oncogene Proteins/genetics , Proto-Oncogene Proteins/metabolism , Receptor Protein-Tyrosine Kinases/genetics , Receptor Protein-Tyrosine Kinases/metabolism , Receptors, Interferon/genetics , Receptors, Interferon/metabolism , c-Mer Tyrosine Kinase/genetics , Axl Receptor Tyrosine Kinase , Interferon gamma Receptor
9.
Nat Commun ; 7: 10332, 2016 Jan 12.
Article in English | MEDLINE | ID: mdl-26755131

ABSTRACT

The etiology of idiopathic Parkinson's disease (idPD) remains enigmatic despite recent successes in identification of genes (PARKs) that underlie familial PD. To find new keys to this incurable neurodegenerative disorder we focused on the poorly understood PARK14 disease locus (Pla2g6 gene) and the store-operated Ca(2+) signalling pathway. Analysis of the cells from idPD patients reveals a significant deficiency in store-operated PLA2g6-dependent Ca(2+) signalling, which we can mimic in a novel B6.Cg-Pla2g6(ΔEx2-VB) (PLA2g6 ex2(KO)) mouse model. Here we demonstrate that genetic or molecular impairment of PLA2g6-dependent Ca(2+) signalling is a trigger for autophagic dysfunction, progressive loss of dopaminergic (DA) neurons in substantia nigra pars compacta and age-dependent L-DOPA-sensitive motor dysfunction. Discovery of this previously unknown sequence of pathological events, its association with idPD and our ability to mimic this pathology in a novel genetic mouse model opens new opportunities for finding a cure for this devastating neurodegenerative disease.


Subject(s)
Brain/metabolism , Calcium Signaling/genetics , Dopaminergic Neurons/metabolism , Group VI Phospholipases A2/genetics , Movement , Parkinson Disease/genetics , Aged , Animals , Blotting, Western , Brain/pathology , Dopaminergic Neurons/pathology , Fibroblasts/metabolism , Fibroblasts/pathology , Group VI Phospholipases A2/metabolism , Humans , Induced Pluripotent Stem Cells , Mice , Mice, Transgenic , Microscopy, Confocal , Microscopy, Fluorescence , Middle Aged , Motor Skills , Parkinson Disease/metabolism , Parkinson Disease/pathology , Reverse Transcriptase Polymerase Chain Reaction , Skin/cytology , Young Adult
10.
Mol Endocrinol ; 18(9): 2166-84, 2004 Sep.
Article in English | MEDLINE | ID: mdl-15192079

ABSTRACT

Ecdysteroids coordinate molting and metamorphosis in insects via a heterodimer of two nuclear receptors, the ecdysone receptor (EcR) and the ultraspiracle (Usp) protein. Here we show how the DNA-recognition alpha-helix and the T box region of the EcR DNA-binding domain (EcRDBD) contribute to the specific interaction with the natural response element and to the stabilization of the EcRDBD molecule. The data indicate a remarkable mutational tolerance with respect to the DNA-binding function of the EcRDBD. This is particularly manifested in the heterocomplexes formed between the EcRDBD mutants and the wild-type Usp DNA-binding domain (UspDBD). Circular dichroism (CD) spectra and protein unfolding experiments indicate that, in contrast to the UspDBD, the EcRDBD is characterized by a lower alpha-helix content and a lower stability. As such, the EcRDBD appears to be an intrinsically unstructured protein-like molecule with a high degree of intramolecular plasticity. Because recently published crystal structures indicate that the ligand binding domain of the EcR is also characterized by the extreme adaptability, we suggest that plasticity of the EcR domains may be a key factor that allows a single EcR molecule to mediate diverse biological effects.


Subject(s)
Receptors, Steroid/chemistry , Receptors, Steroid/metabolism , Response Elements/genetics , Amino Acid Sequence , Amino Acid Substitution , Animals , DNA Mutational Analysis , DNA-Binding Proteins/chemistry , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Drosophila Proteins , Drosophila melanogaster/genetics , Drosophila melanogaster/metabolism , Electrophoretic Mobility Shift Assay , Intracellular Signaling Peptides and Proteins , Molecular Sequence Data , Molting/genetics , Mutation/genetics , Promoter Regions, Genetic/genetics , Protein Serine-Threonine Kinases/genetics , Protein Structure, Secondary/genetics , Protein Structure, Tertiary/genetics , Receptors, Steroid/genetics , Transcription Factors/genetics , Transcription Factors/metabolism
11.
Wiad Lek ; 57(3-4): 103-8, 2004.
Article in Polish | MEDLINE | ID: mdl-15307514

ABSTRACT

There are ongoing multicenter European trials analyzing, among other factors, technical aspects of colonoscopy in various countries. The aim of the study was to compare the techniques of preparation and performance of colonoscopy in the Department of Gastroenterology at Medical University of Silesia in Katowice and other gastroenterology centers throughout Europe. The trial was conducted between January 1st 2001 and May 30th 2001 in 18 centers in 9 European countries. 307 consecutive patients, who signed consent forms, were recruited in Katowice, while 5697 patients were enrolled in other centers. The data were collected in a dedicated sheet, prepared in the coordinating center in Lausanne (Switzerland). The part concerning methods of bowel preparation was filled in before colonoscopy and the remaining questions (sedation, number of persons involved, duration, completeness, diagnosis, complications) were answered after the procedure. The data from all centers were analyzed in Lausanne and the results were sent back to the participants. The comparison of results from Katowice and other centers was performed in Katowice. We found out, that the type of cleansing the gut did not influence the quality of bowel preparation. Colonoscopy was performed under deep sedation (in the presence of anesthesiologist and anesthesiology nurse) more frequently in Katowice than in other centers. Differences between Katowice and the rest of centers in the other technical aspects of colonoscopy were of minor importance.


Subject(s)
Colonoscopy/methods , Quality Assurance, Health Care/statistics & numerical data , Adult , Aged , Colonoscopy/standards , Colonoscopy/statistics & numerical data , Europe/epidemiology , Feasibility Studies , Female , Gastroenterology/standards , Humans , Hypnotics and Sedatives/administration & dosage , Male , Middle Aged , Poland/epidemiology , Therapeutic Irrigation/methods , Time Factors
12.
Wiad Lek ; 57(7-8): 321-6, 2004.
Article in Polish | MEDLINE | ID: mdl-15631185

ABSTRACT

Multicenter European trials estimating appropriateness of colonoscopy are one of the hot topics in gastroenterology. The aim of the study was the estimation of appropriateness of colonoscopy and usefulness of panel experts criteria (elaborated according to RAND/UCLA method) in Department of Gastroenterology of Medical University of Silesia in Katowice and other gastroenterology centers throughout Europe. The trial was conducted between January 1st 2001 and May 30th 2001 in 18 centers in 9 European countries. 307 patients, who signed informed consent, were recruited in Katowice, while 5697 patients were enrolled in the other centers. The data have been collected in a prospective manner on a dedicated sheet, prepared in the coordinating centre in Lausanne (Switzerland). The part of the sheet with evaluation of appropriateness of colonoscopy was filled in before the procedure. The endoscopic (and histopathologic if necessary) diagnosis was collected after the procedure. The data from all centers were analyzed in Lausanne and the results were sent to the participants. The comparison of results from Katowice and of all the other centers was performed in Katowice. We found out, that self-estimation (made by colonoscopist), but also what is much more important the estimation done according to objective criteria of the panel of experts were significantly higher in our department, than in the other participating centers. The overestimation of self-judgment has been significantly higher in the other centers, than in our department. The higher percentage of therapeutic colonoscopies in our department can be responsible for such results.


Subject(s)
Colonoscopy/standards , Quality Assurance, Health Care/statistics & numerical data , Adult , Aged , Colonoscopy/methods , Colonoscopy/statistics & numerical data , Europe/epidemiology , Female , Gastroenterology/standards , Hospitals, University/standards , Humans , Male , Middle Aged , Poland/epidemiology , Prospective Studies , Therapeutic Irrigation/methods , Time Factors
13.
PLoS One ; 9(5): e96809, 2014.
Article in English | MEDLINE | ID: mdl-24805353

ABSTRACT

20-hydroxyecdysone (20E) and juvenile hormone (JH) signaling pathways interact to regulate insect development. Recently, two proteins, a calponin-like Chd64 and immunophilin FKBP39 have been found to play a pivotal role in the cross-talk between 20E and JH, although the molecular basis of interaction remains unknown. The aim of this work was to identify the structural features that would provide understanding of the role of Chd64 in multiple and dynamic complex that cross-links the signaling pathways. Here, we demonstrate the results of in silico and in vitro analyses of the structural organization of Chd64 from Drosophila melanogaster and its homologue from Tribolium castaneum. Computational analysis predicted the existence of disordered regions on the termini of both proteins, while the central region appeared to be globular, probably corresponding to the calponin homology (CH) domain. In vitro analyses of the hydrodynamic properties of the proteins from analytical size-exclusion chromatography and analytical ultracentrifugation revealed that DmChd64 and TcChd64 had an asymmetrical, elongated shape, which was further confirmed by small angle X-ray scattering (SAXS). The Kratky plot indicated disorderness in both Chd64 proteins, which could possibly be on the protein termini and which would give rise to specific hydrodynamic properties. Disordered tails are often involved in diverse interactions. Therefore, it is highly possible that there are intrinsically disordered regions (IDRs) on both termini of the Chd64 proteins that serve as platforms for multiple interaction with various partners and constitute the foundation for their regulatory function.


Subject(s)
Calcium-Binding Proteins/chemistry , DNA-Binding Proteins/chemistry , Drosophila Proteins/chemistry , Ecdysterone/chemistry , Juvenile Hormones/chemistry , Microfilament Proteins/chemistry , Protein Conformation , Animals , Calcium-Binding Proteins/genetics , Circular Dichroism , Drosophila melanogaster/chemistry , Ecdysterone/metabolism , Juvenile Hormones/metabolism , Microfilament Proteins/genetics , Protein Structure, Tertiary , Scattering, Small Angle , Sequence Analysis, Protein , Tribolium/chemistry , X-Ray Diffraction , Calponins
14.
PLoS One ; 9(1): e86052, 2014.
Article in English | MEDLINE | ID: mdl-24465866

ABSTRACT

The heterodimer of the ecdysone receptor (EcR) and ultraspiracle (Usp), members of the nuclear receptors superfamily, regulates gene expression associated with molting and metamorphosis in insects. The DNA binding domains (DBDs) of the Usp and EcR play an important role in their DNA-dependent heterodimerization. Analysis of the crystal structure of the UspDBD/EcRDBD heterocomplex from Drosophila melanogaster on the hsp27 gene response element, suggested an appreciable similarity between both DBDs. However, the chemical denaturation experiments showed a categorically lower stability for the EcRDBD in contrast to the UspDBD. The aim of our study was an elucidation of the molecular basis of this intriguing instability. Toward this end, we mapped the EcRDBD amino acid sequence positions which have an impact on the stability of the EcRDBD. The computational protein design and in vitro analyses of the EcRDBD mutants indicate that non-conserved residues within the α-helix 2, forming the EcRDBD hydrophobic core, represent a specific structural element that contributes to instability. In particular, the L58 appears to be a key residue which differentiates the hydrophobic cores of UspDBD and EcRDBD and is the main reason for the low stability of the EcRDBD. Our results might serve as a benchmark for further studies of the intricate nature of the EcR molecule.


Subject(s)
DNA-Binding Proteins/chemistry , Drosophila Proteins/chemistry , Drosophila melanogaster , Molecular Dynamics Simulation , Receptors, Steroid/chemistry , Transcription Factors/chemistry , Amino Acid Sequence , Amino Acid Substitution , Animals , Binding Sites , DNA/chemistry , Hydrophobic and Hydrophilic Interactions , Molecular Sequence Data , Mutagenesis, Site-Directed , Protein Binding , Protein Stability , Protein Structure, Secondary , Protein Structure, Tertiary , Protein Unfolding , Receptors, Steroid/genetics , Transition Temperature
15.
J Biomol Struct Dyn ; 30(4): 379-93, 2012.
Article in English | MEDLINE | ID: mdl-22694217

ABSTRACT

The ecdysone receptor (EcR) and the ultraspiracle protein (Usp) form the functional receptor for ecdysteroids that initiates metamorphosis in insects. The Usp and EcR DNA-binding domains (UspDBD and EcRDBD, respectively) form a heterodimer on the natural pseudopalindromic element from the hsp27 gene promoter. The conformational changes in the protein-DNA during the formation of the UspDBD-EcRDBD-hsp27 complex were analyzed. Recombined UspDBD and EcRDBD proteins were purified and fluorescein labeled (FL) using the intein method at the C-ends of both proteins. The changes in the distances from the respective C-ends of EcRDBD and/or UspDBD to the 5'- and/or 3'-end of the response element were measured using fluorescence resonance energy transfer (FRET) methodology. The binding of EcRDBD induced a strong conformational change in UspDBD and caused the C-terminal fragment of the UspDBD molecule to move away from both ends of the regulatory element. UspDBD also induced a significant conformational change in the EcRDBD molecule. The EcRDBD C-terminus moved away from the 5'-end of the regulatory element and moved close to the 3'-end. An analysis was also done on the effect that DHR38DBD, the Drosophila ortholog of the mammalian NGFI-B, had on the interaction of UspDBD and EcRDBD with hsp27. FRET analysis demonstrated that hsp27 bending was induced by DHR38DBD. Fluorescence data revealed that hsp27 had a shorter end-to-end distance both in the presence of EcRDBD as well as in the presence of EcRDBD together with DHR38DBD, with DNA bend angles of about 36.2° and 33.6°, respectively. A model of how DHR38DBD binds to hsp27 in the presence of EcRDBD is presented.


Subject(s)
DNA-Binding Proteins/chemistry , Drosophila Proteins/chemistry , Drosophila/genetics , HSP27 Heat-Shock Proteins/chemistry , Receptors, Steroid/chemistry , Response Elements , Transcription Factors/chemistry , Animals , Binding Sites , Cloning, Molecular , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Drosophila Proteins/genetics , Drosophila Proteins/metabolism , Fluorescence Resonance Energy Transfer , HSP27 Heat-Shock Proteins/genetics , HSP27 Heat-Shock Proteins/metabolism , Metamorphosis, Biological/genetics , Models, Molecular , Nucleic Acid Conformation , Protein Binding , Protein Multimerization , Protein Structure, Tertiary , Receptors, Steroid/genetics , Receptors, Steroid/metabolism , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism
16.
Biochemistry ; 45(3): 668-75, 2006 Jan 24.
Article in English | MEDLINE | ID: mdl-16411742

ABSTRACT

Ecdysteroids control molting and metamorphosis in insects via a heterodimeric complex of two nuclear receptors, the ecdysone receptor (EcR) and ultraspiracle protein (Usp). We used fluorescence resonance energy transfer (FRET) to study the topology of the natural pseudopalindromic element from the hsp27 gene (hsp27pal) in complex with the DNA-binding domains of Usp and EcR (UspDBD and EcRDBD, respectively). Steady-state data revealed shortening of the end-to-end distance of the hsp27pal-derived probe. For the 70.8 +/- 0.6 A distance obtained for the UspDBD-complexed DNA a bend of about 23.1 +/- 2.9 degrees was measured. Nearly the same value (23.0 +/- 3.4 degrees) was obtained for the DNA complexed with the UspDBD/EcRDBD heterodimer. The respective bend angles estimated using fluorescence decay measurements were 19.0 +/- 2.1 degrees and 20.9 +/- 3.6 degrees . Thus, the FRET data suggest for the first time that the UspDBD defines the architecture of the UspDBD/EcRDBD heterocomplex due to the significant deformation of the hsp27pal. This suggestion has been further reinforced using gel retardation experiments, which, in conjunction with high-resolution DNase I footprinting, indicate that the main contribution to the observed bend is given by the UspDBD itself, while binding of the EcRDBD molecule brings on a slight additional change of the preformed structure.


Subject(s)
DNA-Binding Proteins/chemistry , DNA-Binding Proteins/metabolism , DNA/chemistry , DNA/metabolism , Nucleic Acid Conformation , Receptors, Steroid/metabolism , Response Elements/genetics , Transcription Factors/chemistry , Transcription Factors/metabolism , Animals , Base Sequence , Binding Sites , DNA/genetics , Drosophila Proteins , Fluorescence Resonance Energy Transfer , Heat-Shock Proteins/genetics , Molecular Sequence Data , Protein Conformation , Protein Structure, Tertiary , Receptors, Steroid/chemistry , Structure-Activity Relationship
17.
Biol Chem ; 384(1): 59-69, 2003 Jan.
Article in English | MEDLINE | ID: mdl-12674500

ABSTRACT

Two members of the nuclear receptor superfamily, EcR (ecdysteroid receptor protein) and Usp (Ultraspiracle), heterodimerize to form a functional receptor for the steroid hormone 20-hydroxyecdysone and thus enable it to coordinate morphogenetic events during insect metamorphosis. N-terminally His-tagged Usp was overexpressed in E. coli cells as a non-truncated protein and purified to homogeneity in two chromatographic steps. It was demonstrated that the recombinant receptor specifically binds the ecdysone response element of the hsp27 gene promoter (hsp27EcRE). Moreover, a highly synergistically formed heterodimeric complex with the DNA-binding domain of EcR was observed on hsp27EcRE, but not on the native Usp response element from the chorion s15 gene promoter. Recombinant Usp forms homodimers and homotetramers in the absence of DNA, as judged from gel filtration and chemical crosslinking experiments. Truncation of its N-terminal A/B region changes molecular characteristics of Usp, considerably weakening its oligomerization potential under the same experimental conditions. This contrasts with the results obtained previously for the similarly truncated RXR--a vertebrate homolog of Usp.


Subject(s)
DNA-Binding Proteins/chemistry , Drosophila Proteins/chemistry , Transcription Factors/chemistry , Animals , Buffers , Chorion/metabolism , Chromatography, Gel , Cross-Linking Reagents , DNA/metabolism , DNA-Binding Proteins/biosynthesis , DNA-Binding Proteins/isolation & purification , Drosophila Proteins/biosynthesis , Drosophila Proteins/isolation & purification , Drosophila melanogaster , Electrophoresis, Polyacrylamide Gel , Electrophoretic Mobility Shift Assay , Escherichia coli , Genetic Vectors , Immunoblotting , Molecular Weight , Neoplasm Proteins/biosynthesis , Neoplasm Proteins/genetics , Oligonucleotide Probes , Plasmids/genetics , Receptors, Steroid/metabolism , Recombinant Proteins/biosynthesis , Recombinant Proteins/genetics , Reverse Transcriptase Polymerase Chain Reaction , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Transcription Factors/biosynthesis , Transcription Factors/isolation & purification
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