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1.
Mol Plant Microbe Interact ; 36(9): 558-571, 2023 Sep.
Article in English | MEDLINE | ID: mdl-36998121

ABSTRACT

Grapevine fanleaf virus (GFLV) (genus Nepovirus, family Secoviridae) causes fanleaf degeneration, one of the most damaging viral diseases of grapevines. Despite substantial advances at deciphering GFLV-host interactions, how this virus overcomes the host antiviral pathways of RNA silencing is poorly understood. In this study, we identified viral suppressors of RNA silencing (VSRs) encoded by GFLV, using fluorescence assays, and tested their capacity at modifying host gene expression in transgenic Nicotiana benthamiana expressing the enhanced green fluorescent protein gene (EGFP). Results revealed that GFLV RNA1-encoded protein 1A, for which a function had yet to be assigned, and protein 1BHel, a putative helicase, reverse systemic RNA silencing either individually or as a fused form (1ABHel) predicted as an intermediary product of RNA1 polyprotein proteolytic processing. The GFLV VSRs differentially altered the expression of plant host genes involved in RNA silencing, as shown by reverse transcription-quantitative PCR. In a co-infiltration assay with an EGFP hairpin construct, protein 1A upregulated NbDCL2, NbDCL4, and NbRDR6, and proteins 1BHel and 1A+1BHel upregulated NbDCL2, NbDCL4, NbAGO1, NbAGO2, and NbRDR6, while protein 1ABHel upregulated NbAGO1 and NbRDR6. In a reversal of systemic silencing assay, protein 1A upregulated NbDCL2 and NbAGO2 and protein 1ABHel upregulated NbDCL2, NbDCL4, and NbAGO1. This is the first report of VSRs encoded by a nepovirus RNA1 and of two VSRs that act either individually or as a predicted fused form to counteract the systemic antiviral host defense, suggesting that GFLV might devise a unique counterdefense strategy to interfere with various steps of the plant antiviral RNA silencing pathways during infection. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.


Subject(s)
Nepovirus , Nepovirus/genetics , RNA Interference , Antiviral Agents , RNA, Viral/genetics , Plant Diseases
2.
Proc Natl Acad Sci U S A ; 117(20): 10848-10855, 2020 05 19.
Article in English | MEDLINE | ID: mdl-32371486

ABSTRACT

Grapevine fanleaf virus (GFLV) is a picorna-like plant virus transmitted by nematodes that affects vineyards worldwide. Nanobody (Nb)-mediated resistance against GFLV has been created recently, and shown to be highly effective in plants, including grapevine, but the underlying mechanism is unknown. Here we present the high-resolution cryo electron microscopy structure of the GFLV-Nb23 complex, which provides the basis for molecular recognition by the Nb. The structure reveals a composite binding site bridging over three domains of one capsid protein (CP) monomer. The structure provides a precise mapping of the Nb23 epitope on the GFLV capsid in which the antigen loop is accommodated through an induced-fit mechanism. Moreover, we uncover and characterize several resistance-breaking GFLV isolates with amino acids mapping within this epitope, including C-terminal extensions of the CP, which would sterically interfere with Nb binding. Escape variants with such extended CP fail to be transmitted by nematodes linking Nb-mediated resistance to vector transmission. Together, these data provide insights into the molecular mechanism of Nb23-mediated recognition of GFLV and of virus resistance loss.


Subject(s)
Nepovirus/drug effects , Plant Diseases/immunology , Single-Chain Antibodies/chemistry , Single-Chain Antibodies/pharmacology , Animals , Antibodies, Viral/immunology , Capsid/chemistry , Capsid Proteins/chemistry , Capsid Proteins/drug effects , Cryoelectron Microscopy , Epitopes/chemistry , Models, Molecular , Nematoda/virology , Nepovirus/ultrastructure , Plant Diseases/virology , Plant Leaves/virology , Plant Viruses/immunology , Plant Viruses/physiology , Protein Conformation , Vitis
3.
Mol Plant Microbe Interact ; 32(7): 790-801, 2019 Jul.
Article in English | MEDLINE | ID: mdl-30640575

ABSTRACT

The mechanisms underlying host plant symptom development upon infection by viruses of the genus Nepovirus in the family Secoviridae, including grapevine fanleaf virus (GFLV), are poorly understood. In the systemic host Nicotiana benthamiana, GFLV strain GHu produces characteristic symptoms of vein clearing in apical leaves, unlike other GFLV strains such as F13, which cause an asymptomatic infection. In this study, we expanded on earlier findings and used reverse genetics to identify residue 802 (lysine, K) of the GFLV-GHu RNA1-encoded RNA-dependent RNA polymerase (1EPol) as a modulator of vein-clearing symptom development in N. benthamiana. Mutations to this site abolished (K to G, A, or Q) or attenuated (K to N or P) symptom expression. Noteworthy, residue 802 is necessary but not sufficient for vein clearing, as GFLV-F13 RNA1 carrying K802 remained asymptomatic in N. benthamiana. No correlation was found between symptom expression and RNA1 accumulation, as shown by reverse transcription-quantitative polymerase chain reaction. Additionally, the involvement of RNA silencing of vein clearing was ruled out by virus-induced gene silencing experiments and structure predictions for protein 1EPol suggested that residue 802 is flanked by strongly predicted stable secondary structures, including a conserved motif of unknown function (805LLKT/AHLK/RT/ALR814). Together, these results reveal the protein nature of the GFLV-GHu symptom determinant in N. benthamiana and provide a solid basis for probing and determining the virus-host proteome network for symptoms of vein clearing.


Subject(s)
Nepovirus , Nicotiana , RNA, Viral , RNA-Dependent RNA Polymerase , Mutation , Nepovirus/enzymology , Nepovirus/genetics , RNA, Viral/genetics , RNA-Dependent RNA Polymerase/genetics , Nicotiana/virology
5.
Plasmid ; 105: 102436, 2019 09.
Article in English | MEDLINE | ID: mdl-31449836

ABSTRACT

Transient expression of proteins based on agro-infiltration techniques has proven very efficient and straightforward to study the intrinsic properties of proteins. The level of protein expression has been enhanced by the use of vector plasmids containing virus-derived sequences and the cloning step has been facilitated by recombination technologies. The pEAQ-HT-DEST series of vectors fulfilling these improvements are vectors of choice. However, they lack the possibility to directly and easily fuse the protein of interest to a fluorescent tag or to address it to the secretion pathway. In the present work we describe the production of 15 pEAQ-HT-DEST1-based plasmids designed to use the Gateway® cloning technology and to generate high levels of fluorescent fusion protein by agro-infiltration, in planta. This collection of plasmids includes binary vectors allowing N-terminal or C-terminal fusion to the bright tags EGFP or TagRFP for cytoplasmic accumulation or secretion and represents therefore a valuable tool for subcellular localization or biochemical studies. A viral protein, the blue fluorescent protein TagBFP, the green fluorescent protein variant T-Sapphire and an Arabidopsis protein were transiently expressed in N. benthamiana to demonstrate the potential of these vectors.


Subject(s)
Genetic Vectors/genetics , Plant Proteins/genetics , Plasmids/genetics , Arabidopsis/genetics , Cloning, Molecular , Gene Expression Regulation, Plant/genetics , Green Fluorescent Proteins/genetics , Plants, Genetically Modified/genetics
6.
Plant Biotechnol J ; 16(2): 660-671, 2018 02.
Article in English | MEDLINE | ID: mdl-28796912

ABSTRACT

Since their discovery, single-domain antigen-binding fragments of camelid-derived heavy-chain-only antibodies, also known as nanobodies (Nbs), have proven to be of outstanding interest as therapeutics against human diseases and pathogens including viruses, but their use against phytopathogens remains limited. Many plant viruses including Grapevine fanleaf virus (GFLV), a nematode-transmitted icosahedral virus and causal agent of fanleaf degenerative disease, have worldwide distribution and huge burden on crop yields representing billions of US dollars of losses annually, yet solutions to combat these viruses are often limited or inefficient. Here, we identified a Nb specific to GFLV that confers strong resistance to GFLV upon stable expression in the model plant Nicotiana benthamiana and also in grapevine rootstock, the natural host of the virus. We showed that resistance was effective against a broad range of GFLV isolates independently of the inoculation method including upon nematode transmission but not against its close relative, Arabis mosaic virus. We also demonstrated that virus neutralization occurs at an early step of the virus life cycle, prior to cell-to-cell movement. Our findings will not only be instrumental to confer resistance to GFLV in grapevine, but more generally they pave the way for the generation of novel antiviral strategies in plants based on Nbs.


Subject(s)
Plant Diseases/immunology , Plant Diseases/virology , Nepovirus/pathogenicity , Plant Viruses/genetics , Plant Viruses/physiology , Single-Domain Antibodies/genetics , Single-Domain Antibodies/physiology
7.
Plant Biotechnol J ; 14(12): 2288-2299, 2016 12.
Article in English | MEDLINE | ID: mdl-27178344

ABSTRACT

Virus-like particles (VLPs) derived from nonenveloped viruses result from the self-assembly of capsid proteins (CPs). They generally show similar structural features to viral particles but are noninfectious and their inner cavity and outer surface can potentially be adapted to serve as nanocarriers of great biotechnological interest. While a VLP outer surface is generally amenable to chemical or genetic modifications, encaging a cargo within particles can be more complex and is often limited to small molecules or peptides. Examples where both inner cavity and outer surface have been used to simultaneously encapsulate and expose entire proteins remain scarce. Here, we describe the production of spherical VLPs exposing fluorescent proteins at either their outer surface or inner cavity as a result of the self-assembly of a single genetically modified viral structural protein, the CP of grapevine fanleaf virus (GFLV). We found that the N- and C-terminal ends of the GFLV CP allow the genetic fusion of proteins as large as 27 kDa and the plant-based production of nucleic acid-free VLPs. Remarkably, expression of N- or C-terminal CP fusions resulted in the production of VLPs with recombinant proteins exposed to either the inner cavity or the outer surface, respectively, while coexpression of both fusion proteins led to the formation hybrid VLP, although rather inefficiently. Such properties are rather unique for a single viral structural protein and open new potential avenues for the design of safe and versatile nanocarriers, particularly for the targeted delivery of bioactive molecules.


Subject(s)
Nepovirus/physiology , Recombinant Proteins/metabolism , Vitis/virology , Capsid Proteins/genetics , Capsid Proteins/metabolism , Nanoparticles , Nepovirus/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Recombinant Proteins/genetics
8.
J Gen Virol ; 94(Pt 12): 2803-2813, 2013 Dec.
Article in English | MEDLINE | ID: mdl-24088345

ABSTRACT

Factors involved in symptom expression of viruses from the genus Nepovirus in the family Secoviridae such as grapevine fanleaf virus (GFLV) are poorly characterized. To identify symptom determinants encoded by GFLV, infectious cDNA clones of RNA1 and RNA2 of strain GHu were developed and used alongside existing infectious cDNA clones of strain F13 in a reverse genetics approach. In vitro transcripts of homologous combinations of RNA1 and RNA2 induced systemic infection in Nicotiana benthamiana and Nicotiana clevelandii with identical phenotypes to WT virus strains, i.e. vein clearing and chlorotic spots on N. benthamiana and N. clevelandii for GHu, respectively, and lack of symptoms on both hosts for F13. The use of assorted transcripts mapped symptom determinants on RNA1 of GFLV strain GHu, in particular within the distal 408 nt of the RNA-dependent RNA polymerase (1E(Pol)), as shown by RNA1 transcripts for which coding regions or fragments derived thereof were swapped. Semi-quantitative analyses indicated no significant differences in virus titre between symptomatic and asymptomatic plants infected with various recombinants. Also, unlike the nepovirus tomato ringspot virus, no apparent proteolytic cleavage of GFLV protein 1E(Pol) was detected upon virus infection or transient expression in N. benthamiana. In addition, GFLV protein 1E(Pol) failed to suppress silencing of EGFP in transgenic N. benthamiana expressing EGFP or to enhance GFP expression in patch assays in WT N. benthamiana. Together, our results suggest the existence of strain-specific functional domains, including a symptom determinant module, on the RNA-dependent RNA polymerase of GFLV.


Subject(s)
Nepovirus/genetics , Nepovirus/pathogenicity , Nicotiana/virology , Plant Diseases/virology , RNA-Dependent RNA Polymerase/genetics , Vitis/virology , Amino Acid Sequence , Molecular Sequence Data , Nepovirus/isolation & purification , Phylogeny , RNA, Viral/genetics , RNA-Dependent RNA Polymerase/chemistry , RNA-Dependent RNA Polymerase/metabolism , Sequence Analysis, DNA , Species Specificity , Viral Proteins/genetics , Viral Proteins/metabolism
9.
PLoS Pathog ; 7(10): e1002327, 2011 Oct.
Article in English | MEDLINE | ID: mdl-22046131

ABSTRACT

Cell-to-cell movement of plant viruses occurs via plasmodesmata (PD), organelles that evolved to facilitate intercellular communications. Viral movement proteins (MP) modify PD to allow passage of the virus particles or nucleoproteins. This passage occurs via several distinct mechanisms one of which is MP-dependent formation of the tubules that traverse PD and provide a conduit for virion translocation. The MP of tubule-forming viruses including Grapevine fanleaf virus (GFLV) recruit the plant PD receptors called Plasmodesmata Located Proteins (PDLP) to mediate tubule assembly and virus movement. Here we show that PDLP1 is transported to PD through a specific route within the secretory pathway in a myosin-dependent manner. This transport relies primarily on the class XI myosins XI-K and XI-2. Inactivation of these myosins using dominant negative inhibition results in mislocalization of PDLP and MP and suppression of GFLV movement. We also found that the proper targeting of specific markers of the Golgi apparatus, the plasma membrane, PD, lipid raft subdomains within the plasma membrane, and the tonoplast was not affected by myosin XI-K inhibition. However, the normal tonoplast dynamics required myosin XI-K activity. These results reveal a new pathway of the myosin-dependent protein trafficking to PD that is hijacked by GFLV to promote tubule-guided transport of this virus between plant cells.


Subject(s)
Myosins/metabolism , Nepovirus/physiology , Plant Viral Movement Proteins/physiology , Bridged Bicyclo Compounds, Heterocyclic/pharmacology , Golgi Apparatus/drug effects , Golgi Apparatus/physiology , Golgi Apparatus/virology , Host-Pathogen Interactions , Membrane Microdomains/drug effects , Membrane Microdomains/virology , Microtubules/drug effects , Microtubules/physiology , Microtubules/virology , Myosins/antagonists & inhibitors , Nepovirus/drug effects , Nepovirus/pathogenicity , Protein Transport/drug effects , Protein Transport/physiology , Thiazolidines/pharmacology , Viral Nonstructural Proteins
10.
PLoS Pathog ; 7(5): e1002034, 2011 May.
Article in English | MEDLINE | ID: mdl-21625570

ABSTRACT

Many animal and plant viruses rely on vectors for their transmission from host to host. Grapevine fanleaf virus (GFLV), a picorna-like virus from plants, is transmitted specifically by the ectoparasitic nematode Xiphinema index. The icosahedral capsid of GFLV, which consists of 60 identical coat protein subunits (CP), carries the determinants of this specificity. Here, we provide novel insight into GFLV transmission by nematodes through a comparative structural and functional analysis of two GFLV variants. We isolated a mutant GFLV strain (GFLV-TD) poorly transmissible by nematodes, and showed that the transmission defect is due to a glycine to aspartate mutation at position 297 (Gly297Asp) in the CP. We next determined the crystal structures of the wild-type GFLV strain F13 at 3.0 Å and of GFLV-TD at 2.7 Å resolution. The Gly297Asp mutation mapped to an exposed loop at the outer surface of the capsid and did not affect the conformation of the assembled capsid, nor of individual CP molecules. The loop is part of a positively charged pocket that includes a previously identified determinant of transmission. We propose that this pocket is a ligand-binding site with essential function in GFLV transmission by X. index. Our data suggest that perturbation of the electrostatic landscape of this pocket affects the interaction of the virion with specific receptors of the nematode's feeding apparatus, and thereby severely diminishes its transmission efficiency. These data provide a first structural insight into the interactions between a plant virus and a nematode vector.


Subject(s)
Capsid Proteins/genetics , Nematoda/virology , Nepovirus , Protein Structure, Quaternary , Amino Acid Substitution , Animals , Capsid , Mutation , Nepovirus/genetics , Nepovirus/metabolism , Nepovirus/ultrastructure , Plant Diseases/genetics , Plant Diseases/virology , Plant Viruses/genetics , RNA, Viral/genetics , Sequence Alignment , Sequence Analysis, Protein , Static Electricity , X-Ray Diffraction
11.
Viruses ; 15(10)2023 09 26.
Article in English | MEDLINE | ID: mdl-37896777

ABSTRACT

Plant proteins with domains rich in leucine repeats play important roles in detecting pathogens and triggering defense reactions, both at the cellular surface for pattern-triggered immunity and in the cell to ensure effector-triggered immunity. As intracellular parasites, viruses are mostly detected intracellularly by proteins with a nucleotide binding site and leucine-rich repeats but receptor-like kinases with leucine-rich repeats, known to localize at the cell surface, have also been involved in response to viruses. In the present review we report on the progress that has been achieved in the last decade on the role of these leucine-rich proteins in antiviral immunity, with a special focus on our current understanding of the hypersensitive response.


Subject(s)
Plant Viruses , Plants , Leucine , Plant Proteins/metabolism , Carrier Proteins , Plant Viruses/metabolism , Plant Diseases , Plant Immunity
12.
PLoS Pathog ; 6(9): e1001119, 2010 Sep 23.
Article in English | MEDLINE | ID: mdl-20886105

ABSTRACT

Plasmodesmata (PD) are essential but poorly understood structures in plant cell walls that provide symplastic continuity and intercellular communication pathways between adjacent cells and thus play fundamental roles in development and pathogenesis. Viruses encode movement proteins (MPs) that modify these tightly regulated pores to facilitate their spread from cell to cell. The most striking of these modifications is observed for groups of viruses whose MPs form tubules that assemble in PDs and through which virions are transported to neighbouring cells. The nature of the molecular interactions between viral MPs and PD components and their role in viral movement has remained essentially unknown. Here, we show that the family of PD-located proteins (PDLPs) promotes the movement of viruses that use tubule-guided movement by interacting redundantly with tubule-forming MPs within PDs. Genetic disruption of this interaction leads to reduced tubule formation, delayed infection and attenuated symptoms. Our results implicate PDLPs as PD proteins with receptor-like properties involved the assembly of viral MPs into tubules to promote viral movement.


Subject(s)
Plant Diseases/virology , Plant Viral Movement Proteins/metabolism , Plant Viruses/physiology , Plasmodesmata/metabolism , Plasmodesmata/virology , Receptors, Cell Surface/metabolism , Arabidopsis/growth & development , Arabidopsis/metabolism , Arabidopsis/virology , Cell Communication , Cell Wall/metabolism , Chenopodium quinoa/growth & development , Chenopodium quinoa/metabolism , Chenopodium quinoa/virology , Immunoblotting , Plant Leaves/growth & development , Plant Leaves/metabolism , Plant Leaves/virology , Protein Transport , RNA, Viral/genetics , Nicotiana/growth & development , Nicotiana/metabolism , Nicotiana/virology
13.
Plant Physiol ; 155(3): 1113-26, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21239621

ABSTRACT

Thioredoxins (Trxs) h, small disulfide reductases, and NADP-thioredoxin reductases (NTRs) have been shown to accumulate in seeds of different plant species and play important roles in seed physiology. However, little is known about the identity, properties, and subcellular location of Trx h isoforms that are abundant in legume seeds. To fill this gap, in this work, we characterized the Trx h family of Medicago truncatula, a model legume, and then explored the activity and localization of Trx h isoforms accumulating in seeds. Twelve Trx h isoforms were identified in M. truncatula. They belong to the groups previously described: h1 to h3 (group I), h4 to h7 (group II), and h8 to h12 (group III). Isoforms of groups I and II were found to be reduced by M. truncatula NTRA, but with different efficiencies, Trxs of group II being more efficiently reduced than Trxs of group I. In contrast, their insulin disulfide-reducing activity varies greatly and independently of the group to which they belong. Furthermore, Trxs h1, h2, and h6 were found to be present in dry and germinating seeds. Trxs h1 and, to a lesser extent, h2 are abundant in both embryonic axes and cotyledons, while Trx h6 is mainly present in cotyledons. Thus, M. truncatula seeds contain distinct isoforms of Trx h that differ in spatial distribution and kinetic properties, suggesting that they play different roles. Because we show that Trx h6 is targeted to the tonoplast, the possible role of this isoform during germination is finally discussed.


Subject(s)
Gene Expression Profiling , Gene Expression Regulation, Plant , Germination/genetics , Medicago truncatula/genetics , Models, Biological , Seeds/genetics , Thioredoxin h/genetics , Amino Acid Sequence , Cloning, Molecular , Databases, Genetic , Electrophoresis, Polyacrylamide Gel , Escherichia coli/metabolism , Insulin/metabolism , Isoenzymes/chemistry , Isoenzymes/genetics , Isoenzymes/metabolism , Kinetics , Medicago truncatula/cytology , Molecular Sequence Data , Phylogeny , Plant Epidermis/cytology , Plant Epidermis/metabolism , Protein Transport , Recombinant Proteins/metabolism , Sequence Analysis, DNA , Subcellular Fractions/metabolism , Thioredoxin h/chemistry , Thioredoxin h/metabolism , Nicotiana/cytology , Nicotiana/metabolism
14.
J Virol ; 84(16): 7924-33, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20519403

ABSTRACT

Grapevine fanleaf virus (GFLV) and Arabis mosaic virus (ArMV) from the genus Nepovirus, family Secoviridae, cause a severe degeneration of grapevines. GFLV and ArMV have a bipartite RNA genome and are transmitted specifically by the ectoparasitic nematodes Xiphinema index and Xiphinema diversicaudatum, respectively. The transmission specificity of both viruses maps to their respective RNA2-encoded coat protein (CP). To further delineate the GFLV CP determinants of transmission specificity, three-dimensional (3D) homology structure models of virions and CP subunits were constructed based on the crystal structure of Tobacco ringspot virus, the type member of the genus Nepovirus. The 3D models were examined to predict amino acids that are exposed at the external virion surface, highly conserved among GFLV isolates but divergent between GFLV and ArMV. Five short amino acid stretches that matched these topographical and sequence conservation criteria were selected and substituted in single and multiple combinations by their ArMV counterparts in a GFLV RNA2 cDNA clone. Among the 21 chimeric RNA2 molecules engineered, transcripts of only three of them induced systemic plant infection in the presence of GFLV RNA1. Nematode transmission assays of the three viable recombinant viruses showed that swapping a stretch of (i) 11 residues in the betaB-betaC loop near the icosahedral 3-fold axis abolished transmission by X. index but was insufficient to restore transmission by X. diversicaudatum and (ii) 7 residues in the betaE-alphaB loop did not interfere with transmission by the two Xiphinema species. This study provides new insights into GFLV CP determinants of nematode transmission.


Subject(s)
Capsid Proteins/physiology , Disease Vectors , Nematoda/virology , Nepovirus/physiology , Plant Diseases/virology , Amino Acid Sequence , Amino Acids/genetics , Animals , Capsid Proteins/chemistry , Capsid Proteins/genetics , Models, Molecular , Molecular Sequence Data , Nepovirus/chemistry , Nepovirus/genetics , Protein Structure, Quaternary , Protein Structure, Tertiary , Recombination, Genetic , Sequence Alignment , Vitis/virology
15.
Viruses ; 13(11)2021 10 22.
Article in English | MEDLINE | ID: mdl-34834945

ABSTRACT

Virus infection of plants can result in various degrees of detrimental impacts and disparate symptom types and severities. Although great strides have been made in our understanding of the virus-host interactions in herbaceous model plants, the mechanisms underlying symptom development are poorly understood in perennial fruit crops. Grapevine fanleaf virus (GFLV) causes variable symptoms in most vineyards worldwide. To better understand GFLV-grapevine interactions in relation to symptom development, field and greenhouse trials were conducted with a grapevine genotype that exhibits distinct symptoms in response to a severe and a mild strain of GFLV. After validation of the infection status of the experimental vines by high-throughput sequencing, the transcriptomic and metabolomic profiles in plants infected with the two viral strains were tested and compared by RNA-Seq and LC-MS, respectively, in the differentiating grapevine genotype. In vines infected with the severe GFLV strain, 1023 genes, among which some are implicated in the regulation of the hypersensitive-type response, were specifically deregulated, and a higher accumulation of resveratrol and phytohormones was observed. Interestingly, some experimental vines restricted the virus to the rootstock and remained symptomless. Our results suggest that GFLV induces a strain- and cultivar-specific defense reaction similar to a hypersensitive reaction. This type of defense leads to a severe stunting phenotype in some grapevines, whereas others are resistant. This work is the first evidence of a hypersensitive-like reaction in grapevine during virus infection.


Subject(s)
Fruit/virology , Nepovirus , Plant Diseases/virology , Genotype , Growth Disorders , High-Throughput Nucleotide Sequencing , Nepovirus/genetics , Phylogeny , Secoviridae , Nicotiana/virology , Transcriptome , Vitis/virology
16.
Methods Mol Biol ; 2149: 443-462, 2020.
Article in English | MEDLINE | ID: mdl-32617950

ABSTRACT

The purification of plant cell walls is challenging because they constitute an open compartment which is not limited by a membrane like the cell organelles. Different strategies have been established to limit the contamination by proteins of other compartments in cell wall proteomics studies. Non-destructive methods rely on washing intact cells with various types of solutions without disrupting the plasma membrane in order to elute cell wall proteins. In contrast, destructive protocols involve the purification of cell walls prior to the extraction of proteins with salt solutions. In both cases, proteins known to be intracellular have been identified by mass spectrometry in cell wall proteomes. The aim of this chapter is to provide tools to assess the subcellular localization of the proteins identified in cell wall proteomics studies, including: (1) bioinformatic predictions, (2) immunocytolocalization of proteins of interest on tissue sections and (3) in muro observation of proteins of interest fused to reporter fluorescent proteins by confocal microscopy. Finally, a qualitative assessment of the work can be performed and the strategy used to prepare the samples can be optimized if necessary.


Subject(s)
Cell Wall/chemistry , Computational Biology/methods , Immunohistochemistry/methods , Plant Cells/metabolism , Plant Proteins/analysis , Proteome/metabolism , Proteomics/methods , Cell Wall/metabolism , Gene Transfer Techniques , Luminescent Proteins/metabolism , Mass Spectrometry , Microscopy, Confocal , Plant Leaves/metabolism , Plant Proteins/isolation & purification , Plant Proteins/metabolism , Tissue Embedding/methods
17.
Front Microbiol ; 10: 17, 2019.
Article in English | MEDLINE | ID: mdl-30804892

ABSTRACT

Genes conferring resistance to plant viruses fall in two categories; the dominant genes that mostly code for proteins with a nucleotide binding site and leucine rich repeats (NBS-LRR), and that directly or indirectly, recognize viral avirulence factors (Avr), and the recessive genes. The latter provide a so-called recessive resistance. They represent roughly half of the known resistance genes and are alleles of genes that play an important role in the virus life cycle. Conversely, all cellular genes critical for the viral infection virtually represent recessive resistance genes. Based on the well-documented case of recessive resistance mediated by eukaryotic translation initiation factors of the 4E/4G family, this review is intended to summarize the possible approaches to control viruses via their host interactors. Classically, resistant crops have been developed through introgression of natural variants of the susceptibility factor from compatible relatives or by random mutagenesis and screening. Transgenic methods have also been applied to engineer improved crops by overexpressing the translation factor either in its natural form or after directed mutagenesis. More recently, innovative approaches like silencing or genome editing have proven their great potential in model and crop plants. The advantages and limits of these different strategies are discussed. This example illustrates the need to identify and characterize more host factors involved in virus multiplication and to assess their application potential in the control of viral diseases.

18.
Viruses ; 11(12)2019 12 11.
Article in English | MEDLINE | ID: mdl-31835698

ABSTRACT

Grapevine fanleaf virus (GFLV) and arabis mosaic virus (ArMV) are nepoviruses responsible for grapevine degeneration. They are specifically transmitted from grapevine to grapevine by two distinct ectoparasitic dagger nematodes of the genus Xiphinema. GFLV and ArMV move from cell to cell as virions through tubules formed into plasmodesmata by the self-assembly of the viral movement protein. Five surface-exposed regions in the coat protein called R1 to R5, which differ between the two viruses, were previously defined and exchanged to test their involvement in virus transmission, leading to the identification of region R2 as a transmission determinant. Region R4 (amino acids 258 to 264) could not be tested in transmission due to its requirement for plant systemic infection. Here, we present a fine-tuning mutagenesis of the GFLV coat protein in and around region R4 that restored the virus movement and allowed its evaluation in transmission. We show that residues T258, M260, D261, and R301 play a crucial role in virus transmission, thus representing a new viral determinant of nematode transmission.


Subject(s)
Disease Vectors , Nematoda/virology , Nepovirus/classification , Nepovirus/physiology , Plant Diseases/parasitology , Plant Diseases/virology , Amino Acid Sequence , Animals , Genes, Reporter , Models, Molecular , Nepovirus/ultrastructure , Protein Conformation , RNA, Viral , Recombination, Genetic , Structure-Activity Relationship , Viral Proteins/chemistry , Viral Proteins/genetics
19.
J Virol Methods ; 257: 16-21, 2018 07.
Article in English | MEDLINE | ID: mdl-29630941

ABSTRACT

One of the greatest hindrances to the study of grapevine fanleaf virus (GFLV) is the dearth of robust protocols for reliable, scalable, and cost-effective inoculation of host plants, especially methods which allow for rapid and targeted manipulation of the virus genome. Agroinoculation fulfills these requirements: it is a relatively rapid, inexpensive, and reliable method for establishing infections, and enables genetic manipulation of viral sequences by modifying plasmids. We designed a system of binary plasmids based on the two genomic RNAs [RNA1 (1) and RNA2 (2)] of GFLV strains F13 (F) and GHu (G) and optimized parameters to maximize systemic infection frequency in Nicotiana benthamiana via agroinoculation. The genomic make-up of the inoculum (G1-G2 and reassortant F1-G2), the identity of the co-infiltrated silencing suppressor (grapevine leafroll associated virus 2 p24), and temperature at which plants were maintained (25 °C) significantly increased systemic infection, while high optical densities of infiltration cultures (OD600nm of 1.0 or 2.0) increased the consistency of systemic infection frequency in N. benthamiana. In contrast, acetosyringone in the bacterial culture media, regardless of concentration, had no effect. Plasmids in this system are amenable to rapid and reliable manipulation by one-step site-directed mutagenesis, as shown by the creation of infectious RNA1 chimeras of the GFLV-F13 and GHu strains. The GFLV agroinoculation plasmids described here, together with the optimized protocol for bacterial culturing and plant maintenance, provide a robust system for the establishment of systemic GFLV infection in N. benthamiana and the rapid generation of GFLV mutants, granting a much-needed tool for investigations into GFLV-host interactions.


Subject(s)
Nepovirus/growth & development , Nicotiana/virology , Plant Diseases/virology , Transformation, Genetic , Plasmids , RNA, Viral/genetics , Reverse Genetics/methods , Temperature
20.
Mol Plant Pathol ; 19(3): 731-743, 2018 03.
Article in English | MEDLINE | ID: mdl-28387986

ABSTRACT

Avirulence factors are critical for the arm's race between a virus and its host in determining incompatible reactions. The response of plants to viruses from the genus Nepovirus in the family Secoviridae, including Grapevine fanleaf virus (GFLV), is well characterized, although the nature and characteristics of the viral avirulence factor remain elusive. By using infectious clones of GFLV strains F13 and GHu in a reverse genetics approach with wild-type, assortant and chimeric viruses, the determinant of necrotic lesions caused by GFLV-F13 on inoculated leaves of Nicotiana occidentalis was mapped to the RNA2-encoded protein 2AHP , particularly to its 50 C-terminal amino acids. The necrotic response showed hallmark characteristics of a genuine hypersensitive reaction, such as the accumulation of phytoalexins, reactive oxygen species, pathogenesis-related protein 1c and hypersensitivity-related (hsr) 203J transcripts. Transient expression of the GFLV-F13 protein 2AHP fused to an enhanced green fluorescent protein (EGFP) tag in N. occidentalis by agroinfiltration was sufficient to elicit a hypersensitive reaction. In addition, the GFLV-F13 avirulence factor, when introduced in GFLV-GHu, which causes a compatible reaction on N. occidentalis, elicited necrosis and partially restricted the virus. This is the first identification of a nepovirus avirulence factor that is responsible for a hypersensitive reaction in both the context of virus infection and transient expression.


Subject(s)
Amino Acids/immunology , Nepovirus/immunology , Nepovirus/pathogenicity , Nicotiana/immunology , Nicotiana/virology , Viral Proteins/immunology , Amino Acids/chemistry , Genome, Viral/genetics , Nepovirus/genetics , Plant Diseases/immunology , Plant Diseases/microbiology , Viral Proteins/chemistry
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