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1.
Cell ; 157(2): 329-339, 2014 Apr 10.
Article in English | MEDLINE | ID: mdl-24725402

ABSTRACT

Recently, A/H5N1 influenza viruses were shown to acquire airborne transmissibility between ferrets upon targeted mutagenesis and virus passage. The critical genetic changes in airborne A/Indonesia/5/05 were not yet identified. Here, five substitutions proved to be sufficient to determine this airborne transmission phenotype. Substitutions in PB1 and PB2 collectively caused enhanced transcription and virus replication. One substitution increased HA thermostability and lowered the pH of membrane fusion. Two substitutions independently changed HA binding preference from α2,3-linked to α2,6-linked sialic acid receptors. The loss of a glycosylation site in HA enhanced overall binding to receptors. The acquired substitutions emerged early during ferret passage as minor variants and became dominant rapidly. Identification of substitutions that are essential for airborne transmission of avian influenza viruses between ferrets and their associated phenotypes advances our fundamental understanding of virus transmission and will increase the value of future surveillance programs and public health risk assessments.


Subject(s)
Influenza A Virus, H5N1 Subtype/physiology , Influenza, Human/transmission , Influenza, Human/virology , Amino Acid Substitution , Animals , Ferrets , Genome, Viral , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Hemagglutinin Glycoproteins, Influenza Virus/metabolism , Humans , Influenza A Virus, H5N1 Subtype/genetics , Mutation , RNA-Dependent RNA Polymerase/chemistry , RNA-Dependent RNA Polymerase/genetics , RNA-Dependent RNA Polymerase/metabolism , Receptors, Virus/metabolism , Selection, Genetic
2.
J Virol ; 93(11)2019 06 01.
Article in English | MEDLINE | ID: mdl-30867311

ABSTRACT

Central nervous system (CNS) disease is one of the most common extrarespiratory tract complications of influenza A virus infections. Remarkably, zoonotic H5N1 virus infections are more frequently associated with CNS disease than seasonal or pandemic influenza viruses. Little is known about the interaction between influenza A viruses and cells of the CNS; therefore, it is currently unknown which viral factors are important for efficient replication. Here, we determined the replication kinetics of a seasonal, pandemic, zoonotic, and lab-adapted influenza A virus in human neuron-like (SK-N-SH) and astrocyte-like (U87-MG) cells and primary mouse cortex neurons. In general, highly pathogenic avian influenza (HPAI) H5N1 virus replicated most efficiently in all cells, which was associated with efficient attachment and infection. Seasonal H3N2 and to a lesser extent pandemic H1N1 virus replicated in a trypsin-dependent manner in SK-N-SH but not in U87-MG cells. In the absence of trypsin, only HPAI H5N1 and WSN viruses replicated. Removal of the multibasic cleavage site (MBCS) from HPAI H5N1 virus attenuated, but did not abrogate, replication. Taken together, our results showed that the MBCS and, to a lesser extent, the ability to attach are important determinants for efficient replication of HPAI H5N1 virus in cells of the CNS. This suggests that both an alternative hemagglutinin (HA) cleavage mechanism and preference for α-2,3-linked sialic acids allowing efficient attachment contribute to the ability of influenza A viruses to replicate efficiently in cells of the CNS. This study further improves our knowledge on potential viral factors important for the neurotropic potential of influenza A viruses.IMPORTANCE Central nervous system (CNS) disease is one of the most common extrarespiratory tract complications of influenza A virus infections, and the frequency and severity differ between seasonal, pandemic, and zoonotic influenza viruses. However, little is known about the interaction of these viruses with cells of the CNS. Differences among seasonal, pandemic, and zoonotic influenza viruses in replication efficacy in CNS cells, in vitro, suggest that the presence of an alternative HA cleavage mechanism and ability to attach are important viral factors. Identifying these viral factors and detailed knowledge of the interaction between influenza virus and CNS cells are important to prevent and treat this potentially lethal CNS disease.


Subject(s)
Central Nervous System/virology , Influenza A virus/metabolism , Virus Replication/physiology , Animals , Cell Line , Dogs , Humans , Influenza A Virus, H1N1 Subtype/physiology , Influenza A Virus, H3N2 Subtype/physiology , Influenza A Virus, H5N1 Subtype/physiology , Influenza, Human/virology , Madin Darby Canine Kidney Cells , Mice , Virulence
3.
Nature ; 501(7468): 560-3, 2013 Sep 26.
Article in English | MEDLINE | ID: mdl-23925116

ABSTRACT

Wild waterfowl form the main reservoir of influenza A viruses, from which transmission occurs directly or indirectly to various secondary hosts, including humans. Direct avian-to-human transmission has been observed for viruses of subtypes A(H5N1), A(H7N2), A(H7N3), A(H7N7), A(H9N2) and A(H10N7) upon human exposure to poultry, but a lack of sustained human-to-human transmission has prevented these viruses from causing new pandemics. Recently, avian A(H7N9) viruses were transmitted to humans, causing severe respiratory disease and deaths in China. Because transmission via respiratory droplets and aerosols (hereafter referred to as airborne transmission) is the main route for efficient transmission between humans, it is important to gain an insight into airborne transmission of the A(H7N9) virus. Here we show that although the A/Anhui/1/2013 A(H7N9) virus harbours determinants associated with human adaptation and transmissibility between mammals, its airborne transmissibility in ferrets is limited, and it is intermediate between that of typical human and avian influenza viruses. Multiple A(H7N9) virus genetic variants were transmitted. Upon ferret passage, variants with higher avian receptor binding, higher pH of fusion, and lower thermostability were selected, potentially resulting in reduced transmissibility. This A(H7N9) virus outbreak highlights the need for increased understanding of the determinants of efficient airborne transmission of avian influenza viruses between mammals.


Subject(s)
Ferrets/virology , Influenza A virus/pathogenicity , Orthomyxoviridae Infections/transmission , Orthomyxoviridae Infections/virology , Air Microbiology , Animals , Birds/virology , Chlorocebus aethiops , Dogs , Genome, Viral/genetics , Hemagglutinin Glycoproteins, Influenza Virus/chemistry , Humans , Influenza A virus/chemistry , Influenza A virus/classification , Influenza A virus/genetics , Influenza in Birds/transmission , Influenza in Birds/virology , Influenza, Human/transmission , Influenza, Human/virology , Madin Darby Canine Kidney Cells , Models, Molecular , Vero Cells
4.
J Gen Virol ; 98(6): 1274-1281, 2017 Jun.
Article in English | MEDLINE | ID: mdl-28612701

ABSTRACT

Over the last decade, an increasing proportion of circulating human influenza A(H3N2) viruses exhibited haemagglutination activity that was sensitive to neuraminidase inhibitors. This change in haemagglutination as compared to older circulating A(H3N2) viruses prompted an investigation of the underlying molecular basis. Recent human influenza A(H3N2) viruses were found to agglutinate turkey erythrocytes in a manner that could be blocked with either oseltamivir or neuraminidase-specific antisera, indicating that agglutination was driven by neuraminidase, with a low or negligible contribution of haemagglutinin. Using representative virus recombinants it was shown that the haemagglutinin of a recent A(H3N2) virus indeed had decreased activity to agglutinate turkey erythrocytes, while its neuraminidase displayed increased haemagglutinating activity. Viruses with chimeric and mutant neuraminidases were used to identify the amino acid substitution histidine to arginine at position 150 flanking the neuraminidase catalytic site as the determinant of this neuraminidase-mediated haemagglutination. An analysis of publicly available neuraminidase gene sequences showed that viruses with histidine at position 150 were rapidly replaced by viruses with arginine at this position between 2005 and 2008, in agreement with the phenotypic data. As a consequence of neuraminidase-mediated haemagglutination of recent A(H3N2) viruses and poor haemagglutination via haemagglutinin, haemagglutination inhibition assays with A(H3N2) antisera are no longer useful to characterize the antigenic properties of the haemagglutinin of these viruses for vaccine strain selection purposes. Continuous monitoring of the evolution of these viruses and potential consequences for vaccine strain selection remains important.


Subject(s)
Arginine/metabolism , Hemagglutination , Influenza A Virus, H3N2 Subtype/enzymology , Neuraminidase/metabolism , Animals , Arginine/genetics , Catalytic Domain , DNA Mutational Analysis , Erythrocytes , Evolution, Molecular , Hemagglutination Inhibition Tests , Humans , Influenza A Virus, H3N2 Subtype/genetics , Influenza, Human/virology , Neuraminidase/genetics , Recombination, Genetic , Reverse Genetics , Turkeys
5.
J Virol ; 90(7): 3794-9, 2016 Jan 20.
Article in English | MEDLINE | ID: mdl-26792744

ABSTRACT

Receptor-binding preference and stability of hemagglutinin have been implicated as crucial determinants of airborne transmission of influenza viruses. Here, amino acid substitutions previously identified to affect these traits were tested in the context of an A/H7N9 virus. Some combinations of substitutions, most notably G219S and K58I, resulted in relatively high affinity for α2,6-linked sialic acid receptor and acid and temperature stability. Thus, the hemagglutinin of the A/H7N9 virus may adopt traits associated with airborne transmission.


Subject(s)
Amino Acid Substitution , Hemagglutinin Glycoproteins, Influenza Virus/metabolism , Influenza A Virus, H7N9 Subtype/physiology , Virus Attachment , Cell Line , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Humans , Influenza A Virus, H7N9 Subtype/genetics , Mutant Proteins/genetics , Mutant Proteins/metabolism , Sialic Acids/metabolism , Temperature
6.
J Virol ; 88(8): 4595-9, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24478425

ABSTRACT

We determined the pattern of attachment of the avian-origin H7N9 influenza viruses A/Anhui/1/2013 and A/Shanghai/1/2013 to the respiratory tract in ferrets, macaques, mice, pigs, and guinea pigs and compared it to that in humans. The H7N9 attachment pattern in macaques, mice, and to a lesser extent pigs and guinea pigs resembled that in humans more closely than the attachment pattern in ferrets. This information contributes to our knowledge of the different animal models for influenza.


Subject(s)
Disease Models, Animal , Influenza A Virus, H7N9 Subtype/physiology , Influenza, Human/virology , Respiratory System/virology , Virus Attachment , Animals , China , Female , Ferrets , Guinea Pigs , Humans , Influenza A Virus, H7N9 Subtype/genetics , Macaca , Male , Mice , Swine
7.
Am J Pathol ; 183(4): 1137-1143, 2013 Oct.
Article in English | MEDLINE | ID: mdl-24029490

ABSTRACT

Influenza A viruses from animal reservoirs have the capacity to adapt to humans and cause influenza pandemics. The occurrence of an influenza pandemic requires efficient virus transmission among humans, which is associated with virus attachment to the upper respiratory tract. Pandemic severity depends on virus ability to cause pneumonia, which is associated with virus attachment to the lower respiratory tract. Recently, a novel avian-origin H7N9 influenza A virus with unknown pandemic potential emerged in humans. We determined the pattern of attachment of two genetically engineered viruses containing the hemagglutinin of either influenza virus A/Shanghai/1/13 or A/Anhui/1/13 to formalin-fixed human respiratory tract tissues using histochemical analysis. Our results show that the emerging H7N9 virus attached moderately or abundantly to both upper and lower respiratory tract, a pattern not seen before for avian influenza A viruses. With the caveat that virus attachment is only the first step in the virus replication cycle, these results suggest that the emerging H7N9 virus has the potential both to transmit efficiently among humans and to cause severe pneumonia.


Subject(s)
Epithelium/pathology , Epithelium/virology , Influenza A Virus, H7N9 Subtype/physiology , Influenza in Birds/virology , Respiratory System/pathology , Respiratory System/virology , Virus Attachment , Adult , Aged , Animals , Erythrocytes/metabolism , Hemagglutination Tests , Hemagglutinin Glycoproteins, Influenza Virus/metabolism , Humans , Influenza, Human/virology , Middle Aged , Reassortant Viruses , Receptors, Virus/metabolism , Turkeys , Young Adult
8.
J Virol ; 86(7): 3975-84, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22278228

ABSTRACT

The route by which highly pathogenic avian influenza (HPAI) H5N1 virus spreads systemically, including the central nervous system (CNS), is largely unknown in mammals. Especially, the olfactory route, which could be a route of entry into the CNS, has not been studied in detail. Although the multibasic cleavage site (MBCS) in the hemagglutinin (HA) of HPAI H5N1 viruses is a major determinant of systemic spread in poultry, the association between the MBCS and systemic spread in mammals is less clear. Here we determined the virus distribution of HPAI H5N1 virus in ferrets in time and space-including along the olfactory route-and the role of the MBCS in systemic replication. Intranasal inoculation with wild-type H5N1 virus revealed extensive replication in the olfactory mucosa, from which it spread to the olfactory bulb and the rest of the CNS, including the cerebrospinal fluid (CSF). Virus spread to the heart, liver, pancreas, and colon was also detected, indicating hematogenous spread. Ferrets inoculated intranasally with H5N1 virus lacking an MBCS demonstrated respiratory tract infection only. In conclusion, HPAI H5N1 virus can spread systemically via two different routes, olfactory and hematogenous, in ferrets. This systemic spread was dependent on the presence of the MBCS in HA.


Subject(s)
Disease Models, Animal , Ferrets , Hemagglutinin Glycoproteins, Influenza Virus/metabolism , Influenza A Virus, H5N1 Subtype/metabolism , Influenza A Virus, H5N1 Subtype/pathogenicity , Influenza, Human/virology , Olfactory Pathways/virology , Amino Acid Motifs , Animals , Blood/virology , Cell Line , Female , Ferrets/blood , Ferrets/virology , Hemagglutinin Glycoproteins, Influenza Virus/chemistry , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Humans , Influenza A Virus, H5N1 Subtype/chemistry , Influenza A Virus, H5N1 Subtype/genetics , Influenza, Human/blood , Influenza, Human/pathology , Olfactory Pathways/pathology , Protein Processing, Post-Translational , Virulence , Virus Replication
9.
PLoS Pathog ; 7(9): e1002276, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21980293

ABSTRACT

Only two classes of antiviral drugs, neuraminidase inhibitors and adamantanes, are approved for prophylaxis and therapy against influenza virus infections. A major concern is that influenza virus becomes resistant to these antiviral drugs and spreads in the human population. The 2009 pandemic A/H1N1 influenza virus is naturally resistant to adamantanes. Recently a novel neuraminidase I223R mutation was identified in an A/H1N1 virus showing cross-resistance to the neuraminidase inhibitors oseltamivir, zanamivir and peramivir. However, the ability of this virus to cause disease and spread in the human population is unknown. Therefore, this clinical isolate (NL/2631-R223) was compared with a well-characterized reference virus (NL/602). In vitro experiments showed that NL/2631-I223R replicated as well as NL/602 in MDCK cells. In a ferret pathogenesis model, body weight loss was similar in animals inoculated with NL/2631-R223 or NL/602. In addition, pulmonary lesions were similar at day 4 post inoculation. However, at day 7 post inoculation, NL/2631-R223 caused milder pulmonary lesions and degree of alveolitis than NL/602. This indicated that the mutant virus was less pathogenic. Both NL/2631-R223 and a recombinant virus with a single I223R change (recNL/602-I223R), transmitted among ferrets by aerosols, despite observed attenuation of recNL/602-I223R in vitro. In conclusion, the I223R mutated virus isolate has comparable replicative ability and transmissibility, but lower pathogenicity than the reference virus based on these in vivo studies. This implies that the 2009 pandemic influenza A/H1N1 virus subtype with an isoleucine to arginine change at position 223 in the neuraminidase has the potential to spread in the human population. It is important to be vigilant for this mutation in influenza surveillance and to continue efforts to increase the arsenal of antiviral drugs to combat influenza.


Subject(s)
Drug Resistance, Multiple, Viral , Influenza, Human , Mutation , Neuraminidase/metabolism , Orthomyxoviridae Infections , Pandemics , Animals , Cell Line , Disease Models, Animal , Dogs , Ferrets , Humans , Influenza A Virus, H1N1 Subtype/enzymology , Influenza A Virus, H1N1 Subtype/genetics , Influenza A Virus, H1N1 Subtype/pathogenicity , Influenza, Human/enzymology , Influenza, Human/epidemiology , Influenza, Human/genetics , Influenza, Human/transmission , Neuraminidase/genetics , Orthomyxoviridae Infections/enzymology , Orthomyxoviridae Infections/epidemiology , Orthomyxoviridae Infections/genetics , Orthomyxoviridae Infections/metabolism , Orthomyxoviridae Infections/transmission
10.
Emerg Infect Dis ; 17(2): 200-8, 2011 Feb.
Article in English | MEDLINE | ID: mdl-21291589

ABSTRACT

Since emergence of the pandemic (H1N1) 2009 virus in April 2009, three influenza A viruses-seasonal (H3N2), seasonal (H1N1), and pandemic (H1N1) 2009-have circulated in humans. Genetic reassortment between these viruses could result in enhanced pathogenicity. We compared 4 reassortant viruses with favorable in vitro replication properties with the wild-type pandemic (H1N1) 2009 virus with respect to replication kinetics in vitro and pathogenicity and transmission in ferrets. Pandemic (H1N1) 2009 viruses containing basic polymerase 2 alone or in combination with acidic polymerase of seasonal (H1N1) virus were attenuated in ferrets. In contrast, pandemic (H1N1) 2009 with neuraminidase of seasonal (H3N2) virus resulted in increased virus replication and more severe pulmonary lesions. The data show that pandemic (H1N1) 2009 virus has the potential to reassort with seasonal influenza viruses, which may result in increased pathogenicity while it maintains the capacity of transmission through aerosols or respiratory droplets.


Subject(s)
Influenza A Virus, H1N1 Subtype/genetics , Influenza A Virus, H1N1 Subtype/pathogenicity , Influenza A Virus, H3N2 Subtype/genetics , Reassortant Viruses/genetics , Reassortant Viruses/pathogenicity , Animals , Cell Line , Ferrets , Humans , Influenza A Virus, H3N2 Subtype/pathogenicity , Orthomyxoviridae Infections/virology , Pandemics , Respiratory System/pathology , Respiratory System/virology , Seasons , Severity of Illness Index
11.
J Gen Virol ; 92(Pt 6): 1410-1415, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21346026

ABSTRACT

A multibasic cleavage site (MBCS) in the haemagglutinin (HA) protein of influenza A virus is a key determinant of pathogenicity in chickens, and distinguishes highly pathogenic avian influenza (HPAI) viruses from low pathogenic avian influenza viruses (LPAI). An MBCS has only been detected in viruses of the H5 and H7 subtypes. Here we investigated the phenotype of a human H3N2 virus with an MBCS in HA. Insertion of an MBCS in the H3N2 virus resulted in cleavage of HA and efficient replication in Madin-Darby canine kidney cells in the absence of exogenous trypsin in vitro, similar to HPAI H5N1 virus. However, studies in ferrets demonstrated that insertion of the MBCS into HA did not result in increased virus shedding, cellular host range, systemic replication or pathogenicity, as compared with wild-type virus. This study indicates that acquisition of an MBCS alone is insufficient to increase pathogenicity of a prototypical seasonal human H3N2 virus.


Subject(s)
Ferrets , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Hemagglutinin Glycoproteins, Influenza Virus/metabolism , Influenza A Virus, H3N2 Subtype/pathogenicity , Mutagenesis, Insertional , Orthomyxoviridae Infections/veterinary , Animals , Cell Line , Dogs , Hemagglutinin Glycoproteins, Influenza Virus/chemistry , Humans , Influenza A Virus, H3N2 Subtype/chemistry , Influenza A Virus, H3N2 Subtype/genetics , Influenza A Virus, H3N2 Subtype/physiology , Orthomyxoviridae Infections/virology , Protein Processing, Post-Translational , Virus Replication
12.
J Virol ; 84(16): 7953-60, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20519405

ABSTRACT

The highly pathogenic avian influenza (HPAI) virus phenotype is restricted to influenza A viruses of the H5 and H7 hemagglutinin (HA) subtypes. To obtain more information on the apparent subtype-specific nature of the HPAI virus phenotype, a low-pathogenic avian influenza (LPAI) H6N1 virus was generated, containing an HPAI H5 RRRKKR [downward arrow] G multibasic cleavage site (MBCS) motif in HA (the downward arrow indicates the site of cleavage). This insertion converted the LPAI virus phenotype into an HPAI virus phenotype in vitro and in vivo. The H6N1 virus with an MBCS displayed in vitro characteristics similar to those of HPAI H5 viruses, such as cleavage of HA(0) (the HA protein of influenza A virus initially synthesized as a single polypeptide precursor) and virus replication in the absence of exogenous trypsin. Studies of chickens confirmed the HPAI phenotype of the H6N1 virus with an MBCS, with an intravenous pathogenicity index of 1.4 and systemic virus replication upon intranasal inoculation, the hallmarks of HPAI viruses. This study provides evidence that the subtype-specific nature of the emergence of HPAI viruses is not at the molecular, structural, or functional level, since the introduction of an MBCS resulted in a fully functional virus with an HPAI virus genotype and phenotype.


Subject(s)
Hemagglutinin Glycoproteins, Influenza Virus/physiology , Influenza A virus/pathogenicity , Mutagenesis, Insertional , Virulence Factors/metabolism , Animal Structures/virology , Animals , Binding Sites , Cell Line , Chickens , Dogs , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Immunohistochemistry , Influenza A virus/genetics , Influenza in Birds/pathology , Influenza in Birds/virology , Microscopy , Molecular Sequence Data , Poultry Diseases/pathology , Poultry Diseases/virology , RNA, Viral/genetics , Recombination, Genetic , Sequence Analysis, DNA , Viral Load , Virulence , Virulence Factors/genetics
13.
J Virol ; 84(8): 3752-8, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20130063

ABSTRACT

In the first 6 months of the H1N1 swine-origin influenza virus (S-OIV) pandemic, the vast majority of infections were relatively mild. It has been postulated that mutations in the viral genome could result in more virulent viruses, leading to a more severe pandemic. Mutations E627K and D701N in the PB2 protein have previously been identified as determinants of avian and pandemic influenza virus virulence in mammals. These mutations were absent in S-OIVs detected early in the 2009 pandemic. Here, using reverse genetics, mutations E627K, D701N, and E677G were introduced into the prototype S-OIV A/Netherlands/602/2009, and their effects on virus replication, virulence, and transmission were investigated. Mutations E627K and D701N caused increased reporter gene expression driven by the S-OIV polymerase complex. None of the three mutations affected virus replication in vitro. The mutations had no major impact on virus replication in the respiratory tracts of mice and ferrets or on pathogenesis. All three mutant viruses were transmitted via aerosols or respiratory droplets in ferrets. Thus, the impact of key known virulence markers in PB2 in the context of current S-OIVs was surprisingly small. This study does not exclude the possibility of emergence of S-OIVs with other virulence-associated mutations in the future. We conclude that surveillance studies aimed at detecting S-OIVs with increased virulence or transmission should not rely solely on virulence markers identified in the past but should include detailed characterization of virus phenotypes, guided by genetic signatures of viruses detected in severe cases of disease in humans.


Subject(s)
Amino Acid Substitution/genetics , Influenza A Virus, H1N1 Subtype/pathogenicity , Mutation, Missense , Orthomyxoviridae Infections/transmission , Orthomyxoviridae Infections/virology , Viral Proteins/physiology , Virulence Factors/physiology , Animals , Female , Ferrets , Genetic Engineering , Humans , Influenza A Virus, H1N1 Subtype/genetics , Influenza A Virus, H1N1 Subtype/isolation & purification , Influenza, Human/virology , Mice , Mice, Inbred BALB C , Mutagenesis, Site-Directed , Respiratory System/virology , Viral Load , Viral Proteins/genetics , Virulence , Virulence Factors/genetics , Virus Replication
14.
J Virol ; 84(22): 11802-13, 2010 Nov.
Article in English | MEDLINE | ID: mdl-20844044

ABSTRACT

The clinical impact of the 2009 pandemic influenza A(H1N1) virus (pdmH1N1) has been relatively low. However, amino acid substitution D222G in the hemagglutinin of pdmH1N1 has been associated with cases of severe disease and fatalities. D222G was introduced in a prototype pdmH1N1 by reverse genetics, and the effect on virus receptor binding, replication, antigenic properties, and pathogenesis and transmission in animal models was investigated. pdmH1N1 with D222G caused ocular disease in mice without further indications of enhanced virulence in mice and ferrets. pdmH1N1 with D222G retained transmissibility via aerosols or respiratory droplets in ferrets and guinea pigs. The virus displayed changes in attachment to human respiratory tissues in vitro, in particular increased binding to macrophages and type II pneumocytes in the alveoli and to tracheal and bronchial submucosal glands. Virus attachment studies further indicated that pdmH1N1 with D222G acquired dual receptor specificity for complex α2,3- and α2,6-linked sialic acids. Molecular dynamics modeling of the hemagglutinin structure provided an explanation for the retention of α2,6 binding. Altered receptor specificity of the virus with D222G thus affected interaction with cells of the human lower respiratory tract, possibly explaining the observed association with enhanced disease in humans.


Subject(s)
Amino Acid Substitution , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Hemagglutinin Glycoproteins, Influenza Virus/metabolism , Influenza A Virus, H1N1 Subtype/physiology , Influenza A Virus, H1N1 Subtype/pathogenicity , Influenza, Human/metabolism , Influenza, Human/virology , Receptors, Virus/metabolism , Amino Acid Motifs , Animals , Binding Sites , Cell Line , Disease Models, Animal , Dogs , Female , Ferrets , Guinea Pigs , Hemagglutinin Glycoproteins, Influenza Virus/chemistry , Humans , Influenza A Virus, H1N1 Subtype/genetics , Influenza, Human/epidemiology , Influenza, Human/transmission , Male , Mice , Mice, Inbred BALB C , Models, Molecular , N-Acetylneuraminic Acid/chemistry , N-Acetylneuraminic Acid/metabolism , Pandemics , Receptors, Virus/chemistry , Turkeys , Virulence , Virus Attachment
15.
JAC Antimicrob Resist ; 3(4): dlab156, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34806003

ABSTRACT

BACKGROUND: Colistin is classified as the highest priority and critically important antimicrobial for human medicine by WHO as it is the last resort agent for treatment of carbapenem-resistant Enterobacteriaceae in humans. Additional research is necessary to elucidate the genetic structure of mcr-1 resistance genes, commonly found on plasmids, using WGS. OBJECTIVES: To map and compare the genetic characteristics of 35 mcr-1-mediated colistin-resistant Enterobacteriaceae isolated from chicken meat to highlight the genetic variation of the mcr-1-containing plasmids. METHODS: Sequencing was performed using Illumina HiSeq2500, Novaseq6000 and ONT's GridION. GridION data was locally basecalled and demultiplexed using ONT's Albacore 2.3.4 followed by Porechop 2.3. Quality filtering was performed using Filtlong 2.0. Hybrid Assembly was performed using Unicycler 4.7. Plasmids were compared with reference sequences in plasmid-RefSeq and pATLAS. RESULTS: A total of 35 mcr-1 positive Enterobacteriaceae were investigated, which resulted in 34 qualitatively robust hybrid assemblies of 2 Klebsiella pneumoniae and 32 Escherichia coli. mcr-1.1 was present in 33/34 isolates. One isolate contained an mcr-1.1-like resistance gene, due to a deletion of one codon. Two mcr-1.1 genes were located on the chromosome, while the majority of the mcr-1 genes were found on IncX4 type plasmids (n = 19). Almost all plasmids identified in this study were highly similar to plasmids found in human-derived strains. CONCLUSIONS: The mcr-1.1-containing plasmids from retail chicken show high sequence similarity to human mcr-1.1 plasmids, suggesting that this may be a contributor to the presence of colistin resistance in humans.

16.
Antimicrob Resist Infect Control ; 9(1): 116, 2020 07 28.
Article in English | MEDLINE | ID: mdl-32723393

ABSTRACT

OBJECTIVES: Maintenance treatment with macrolide antibiotics has shown to be effective in reducing exacerbations in COPD patients. A major concern with prolonged treatment with antibiotics is the development of bacterial resistance. In this study we determined the effect of azithromycin on the development and acquisition of resistance to macrolides in the nasopharyngeal flora in COPD patients. METHODS: This study was part of the COLUMBUS trial, a randomised, double-blind, placebo-controlled trial to measure the effect of maintenance treatment with azithromycin in 92 COPD patients on the exacerbation rates during a 12-month period. In order to determine resistance to macrolides, we used a targeted metagenomic approach to measure the presence and relative abundance of specific macrolide resistance genes ermB, ermF and mefA in throat samples collected at different time-points during this 12-month period. RESULTS: There was no increased risk for acquisition of macrolide resistance genes in the azithromycin group compared to the placebo group in COPD patients. However, loss of the macrolide resistance gene ermB was increased overtime in the placebo treated group compared to the azithromycin group (n = 5 for the placebo group versus n = 0 for the azithromycin group at 12 months; p = 0.012). The change in relative abundance of the three macrolide-resistance genes showed that all but one (ermF) increased during treatment with azithromycin. CONCLUSIONS: The acquisition rate of macrolide resistance genes in COPD patients treated with azithromycin maintenance therapy was limited, but the relative abundance of macrolide resistance genes increased significantly over time compared to placebo. This study was part of the COLUMBUS trial ( Clinicaltrials.gov , NCT00985244 ).


Subject(s)
Anti-Bacterial Agents/therapeutic use , Azithromycin/therapeutic use , Bacterial Infections/drug therapy , Drug Resistance, Bacterial/genetics , Macrolides/therapeutic use , Pulmonary Disease, Chronic Obstructive/microbiology , Aged , Double-Blind Method , Drug Administration Schedule , Female , Humans , Male , Middle Aged , Prevalence , Pulmonary Disease, Chronic Obstructive/drug therapy
17.
Virus Res ; 137(1): 24-32, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18602181

ABSTRACT

Feline immunodeficiency virus (FIV) is a member of the genus Lentivirus and causes AIDS-like disease in its natural host, the cat. Like other lentiviruses, FIV displays a high degree of nucleotide sequence variability that is reflected in both the geographic distribution of the viruses and the different cat species that are infected. Although a lot of data on sequence variation at the population level is available, relatively little is known about the intrahost variation of FIV sequences. In the present study, cats were infected with either a biological isolate of FIV or a molecular clone that was derived from the same isolate, AM19. After infection, the cats were monitored for up to 3 years and at various time points sequences were obtained of virus circulating in the plasma. Regions of the env gene and the orfA gene were amplified, cloned and their nucleotide sequence analyzed. Furthermore, the extent of sequence variation in the original inocula was also determined. It was found that FIV is displaying relative little sequence variation during infection of its host, both in the env and the orfA gene, especially after infection with molecular clone 19k1. Although the extent of variation was higher after infection with biological isolate AM19, a large portion of these variant sequences was already present in the inoculum.


Subject(s)
Evolution, Molecular , Feline Acquired Immunodeficiency Syndrome/virology , Glycoproteins/genetics , Immunodeficiency Virus, Feline/genetics , Viral Envelope Proteins/genetics , Viral Proteins/genetics , Amino Acid Sequence , Animals , Cats , Cloning, Molecular , Genetic Variation , Glycoproteins/chemistry , Immunodeficiency Virus, Feline/isolation & purification , Molecular Sequence Data , Sequence Alignment , Time Factors , Viral Envelope Proteins/chemistry , Viral Proteins/chemistry
18.
Vet Immunol Immunopathol ; 126(3-4): 332-8, 2008 Dec 15.
Article in English | MEDLINE | ID: mdl-18952300

ABSTRACT

In recent years it has become clear that cell-mediated immunity is playing a role in the control of lentivirus infections. In particular, cytotoxic T lymphocyte responses have been associated with improved outcome of infection, especially those directed against the regulatory proteins like Rev and Tat, which are expressed early after infection. Therefore, there is considerable interest in lentiviral vaccine candidates that can induce these types of immune responses. In the present study, we describe the construction and characterisation of expression vectors based on recombinant Semliki Forest virus system and modified vaccinia virus Ankara for the expression of feline immunodeficiency virus (FIV) accessory proteins Rev and OrfA. These recombinant viral vectors were used to immunize cats using a prime-boost regimen and the protective efficacy of this vaccination strategy was assessed after challenge infection of immunized cats with FIV.


Subject(s)
Feline Acquired Immunodeficiency Syndrome/prevention & control , Immunodeficiency Virus, Feline/immunology , Immunotherapy, Active/veterinary , Viral Vaccines/immunology , Animals , Cats , Enzyme-Linked Immunosorbent Assay/veterinary , Feline Acquired Immunodeficiency Syndrome/immunology , Genetic Vectors , Immunotherapy, Active/methods , Semliki forest virus , Vaccinia virus
19.
PLoS One ; 13(10): e0204864, 2018.
Article in English | MEDLINE | ID: mdl-30273375

ABSTRACT

OBJECTIVE: The objective of this study is to determine the prevalence of rectal carriage of plasmid- and chromosome-encoded AmpC ß-lactamase-producing Escherichia coli and Klebsiella spp. in patients in a Dutch teaching hospital between 2013 and 2016. METHODS: Between 2013 and 2016, hospital-wide yearly prevalence surveys were performed to determine the prevalence of AmpC ß-lactamase-producing E. coli and Klebsiella spp. rectal carriage. Rectal swabs were taken and cultured using an enrichment broth and selective agar plates. All E. coli and Klebsiella spp. isolates were screened for production of AmpC ß-lactamase using phenotypic confirmation tests and for the presence of plasmid-encoded AmpC (pAmpC) genes. E. coli isolates were screened for chromosome-encoded AmpC (cAmpC) promoter/attenuator alterations. RESULTS: Fifty (2.4%) of 2,126 evaluable patients were identified as rectal carrier of AmpC ß-lactamase-producing E. coli. No carriage of AmpC ß-lactamase producing Klebsiella spp. was found. Nineteen (0.9%) patients harboured isolates with pAmpC genes and 30 (1,4%) patients harboured isolates with cAmpC promoter/attenuator alterations associated with AmpC ß-lactamase overproduction. For one isolate, no pAmpC genes or cAmpC promotor/attenuator alterations could be identified. During the study period, a statistically significant decline in the prevalence of rectal carriage with E. coli with cAmpC promotor/attenuator alterations was found (p = 0.012). The prevalence of pAmpC remained stable over the years. CONCLUSIONS: The prevalence of rectal carriage of AmpC-producing E. coli and Klebsiella spp. in patients in Dutch hospitals is low and a declining trend was observed for E. coli with cAmpC promotor/attenuator alterations.


Subject(s)
Bacterial Proteins/genetics , Escherichia coli Infections/epidemiology , Escherichia coli/growth & development , Klebsiella Infections/epidemiology , beta-Lactamases/genetics , Adolescent , Adult , Aged , Aged, 80 and over , Amplified Fragment Length Polymorphism Analysis , Bacterial Proteins/metabolism , Child , Child, Preschool , Escherichia coli/enzymology , Escherichia coli Infections/microbiology , Female , Hospitals, Teaching , Humans , Infant , Infant, Newborn , Klebsiella/enzymology , Klebsiella/growth & development , Klebsiella Infections/microbiology , Male , Middle Aged , Netherlands/epidemiology , Phenotype , Prevalence , Promoter Regions, Genetic , Rectum/microbiology , Young Adult , beta-Lactamases/metabolism
20.
J Virol Methods ; 143(2): 169-74, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17420056

ABSTRACT

Virus-neutralizing antibodies against human metapneumovirus (hMPV) have been shown to be important indicators for protection in experimental animal models. An improved plaque reduction virus neutralization assay to detect hMPV-specific neutralizing antibodies was designed using two prototype recombinant hMPV strains expressing green fluorescent protein (GFP). These prototypes represented each of the main antigenic variants of hMPV, because antigenic variability could have implications for vaccine development. The utility of mutations in the F gene resulting in trypsin-independent replication was also tested. Although these mutant hMPV strains could replicate in the absence of trypsin, bigger plaque size was achieved with the addition of trypsin. Insertion of the GFP gene in the genome of hMPV did not affect replication of the virus in vitro. Plaques could be detected by measuring expression of GFP after 5 days by automated scanning. Ferret, hamster, and macaque sera positive for hMPV were compared in a conventional virus neutralization assay and the plaque reduction virus neutralization assay. The results obtained with the two assays were in agreement but the improved plaque reduction virus neutralization assay was faster, more suitable for high throughput testing, and 10-fold more sensitive than the conventional virus neutralization assay.


Subject(s)
Antibodies, Viral/blood , Metapneumovirus/immunology , Neutralization Tests/methods , Animals , Chlorocebus aethiops , Cricetinae , Ferrets , Genes, Reporter , Green Fluorescent Proteins/analysis , Green Fluorescent Proteins/genetics , Macaca , Metapneumovirus/genetics , Metapneumovirus/physiology , Recombination, Genetic , Sensitivity and Specificity , Serum/immunology , Trypsin/metabolism , Vero Cells , Viral Plaque Assay , Viral Proteins/genetics , Virus Replication/genetics , Virus Replication/physiology
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