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1.

T Cell Responses to SARS-CoV-2.

Sette, Alessandro; Sidney, John; Crotty, Shane.

Annu Rev Immunol ; 41: 343-373, 2023 04 26.

Article in English | MEDLINE | ID: mdl-36750314

2.

T Cell Epitope Predictions.

Peters, Bjoern; Nielsen, Morten; Sette, Alessandro.

Annu Rev Immunol ; 38: 123-145, 2020 04 26.

Article in English | MEDLINE | ID: mdl-32045313

3.

Multi-omics analysis of mucosal and systemic immunity to SARS-CoV-2 after birth.

Wimmers, Florian; Burrell, Allison R; Feng, Yupeng; Zheng, Hong; Arunachalam, Prabhu S; Hu, Mengyun; Spranger, Sara; Nyhoff, Lindsay E; Joshi, Devyani; Trisal, Meera; Awasthi, Mayanka; Bellusci, Lorenza; Ashraf, Usama; Kowli, Sangeeta; Konvinse, Katherine C; Yang, Emily; Blanco, Michael; Pellegrini, Kathryn; Tharp, Gregory; Hagan, Thomas; Chinthrajah, R Sharon; Nguyen, Tran T; Grifoni, Alba; Sette, Alessandro; Nadeau, Kari C; Haslam, David B; Bosinger, Steven E; Wrammert, Jens; Maecker, Holden T; Utz, Paul J; Wang, Taia T; Khurana, Surender; Khatri, Purvesh; Staat, Mary A; Pulendran, Bali.

Cell ; 186(21): 4632-4651.e23, 2023 10 12.

Article in English | MEDLINE | ID: mdl-37776858

4.

Humoral and cellular immune memory to four COVID-19 vaccines.

Zhang, Zeli; Mateus, Jose; Coelho, Camila H; Dan, Jennifer M; Moderbacher, Carolyn Rydyznski; Gálvez, Rosa Isela; Cortes, Fernanda H; Grifoni, Alba; Tarke, Alison; Chang, James; Escarrega, E Alexandar; Kim, Christina; Goodwin, Benjamin; Bloom, Nathaniel I; Frazier, April; Weiskopf, Daniela; Sette, Alessandro; Crotty, Shane.

Cell ; 185(14): 2434-2451.e17, 2022 07 07.

Article in English | MEDLINE | ID: mdl-35764089

5.

SARS-CoV-2 vaccination induces immunological T cell memory able to cross-recognize variants from Alpha to Omicron.

Tarke, Alison; Coelho, Camila H; Zhang, Zeli; Dan, Jennifer M; Yu, Esther Dawen; Methot, Nils; Bloom, Nathaniel I; Goodwin, Benjamin; Phillips, Elizabeth; Mallal, Simon; Sidney, John; Filaci, Gilberto; Weiskopf, Daniela; da Silva Antunes, Ricardo; Crotty, Shane; Grifoni, Alba; Sette, Alessandro.

Cell ; 185(5): 847-859.e11, 2022 03 03.

Article in English | MEDLINE | ID: mdl-35139340

6.

Germinal center responses to SARS-CoV-2 mRNA vaccines in healthy and immunocompromised individuals.

Lederer, Katlyn; Bettini, Emily; Parvathaneni, Kalpana; Painter, Mark M; Agarwal, Divyansh; Lundgreen, Kendall A; Weirick, Madison; Muralidharan, Kavitha; Castaño, Diana; Goel, Rishi R; Xu, Xiaoming; Drapeau, Elizabeth M; Gouma, Sigrid; Ort, Jordan T; Awofolaju, Moses; Greenplate, Allison R; Le Coz, Carole; Romberg, Neil; Trofe-Clark, Jennifer; Malat, Gregory; Jones, Lisa; Rosen, Mark; Weiskopf, Daniela; Sette, Alessandro; Besharatian, Behdad; Kaminiski, Mary; Hensley, Scott E; Bates, Paul; Wherry, E John; Naji, Ali; Bhoj, Vijay; Locci, Michela.

Cell ; 185(6): 1008-1024.e15, 2022 03 17.

Article in English | MEDLINE | ID: mdl-35202565

7.

Adaptive immunity to SARS-CoV-2 and COVID-19.

Sette, Alessandro; Crotty, Shane.

Cell ; 184(4): 861-880, 2021 02 18.

Article in English | MEDLINE | ID: mdl-33497610

8.

Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs.

Weingarten-Gabbay, Shira; Klaeger, Susan; Sarkizova, Siranush; Pearlman, Leah R; Chen, Da-Yuan; Gallagher, Kathleen M E; Bauer, Matthew R; Taylor, Hannah B; Dunn, W Augustine; Tarr, Christina; Sidney, John; Rachimi, Suzanna; Conway, Hasahn L; Katsis, Katelin; Wang, Yuntong; Leistritz-Edwards, Del; Durkin, Melissa R; Tomkins-Tinch, Christopher H; Finkel, Yaara; Nachshon, Aharon; Gentili, Matteo; Rivera, Keith D; Carulli, Isabel P; Chea, Vipheaviny A; Chandrashekar, Abishek; Bozkus, Cansu Cimen; Carrington, Mary; Bhardwaj, Nina; Barouch, Dan H; Sette, Alessandro; Maus, Marcela V; Rice, Charles M; Clauser, Karl R; Keskin, Derin B; Pregibon, Daniel C; Hacohen, Nir; Carr, Steven A; Abelin, Jennifer G; Saeed, Mohsan; Sabeti, Pardis C.

Cell ; 184(15): 3962-3980.e17, 2021 07 22.

Article in English | MEDLINE | ID: mdl-34171305

9.

Prior vaccination promotes early activation of memory T cells and enhances immune responses during SARS-CoV-2 breakthrough infection.

Painter, Mark M; Johnston, Timothy S; Lundgreen, Kendall A; Santos, Jefferson J S; Qin, Juliana S; Goel, Rishi R; Apostolidis, Sokratis A; Mathew, Divij; Fulmer, Bria; Williams, Justine C; McKeague, Michelle L; Pattekar, Ajinkya; Goode, Ahmad; Nasta, Sean; Baxter, Amy E; Giles, Josephine R; Skelly, Ashwin N; Felley, Laura E; McLaughlin, Maura; Weaver, Joellen; Kuthuru, Oliva; Dougherty, Jeanette; Adamski, Sharon; Long, Sherea; Kee, Macy; Clendenin, Cynthia; da Silva Antunes, Ricardo; Grifoni, Alba; Weiskopf, Daniela; Sette, Alessandro; Huang, Alexander C; Rader, Daniel J; Hensley, Scott E; Bates, Paul; Greenplate, Allison R; Wherry, E John.

Nat Immunol ; 24(10): 1711-1724, 2023 Oct.

Article in English | MEDLINE | ID: mdl-37735592

10.

Imbalance of Regulatory and Cytotoxic SARS-CoV-2-Reactive CD4⁺ T Cells in COVID-19.

Meckiff, Benjamin J; Ramírez-Suástegui, Ciro; Fajardo, Vicente; Chee, Serena J; Kusnadi, Anthony; Simon, Hayley; Eschweiler, Simon; Grifoni, Alba; Pelosi, Emanuela; Weiskopf, Daniela; Sette, Alessandro; Ay, Ferhat; Seumois, Grégory; Ottensmeier, Christian H; Vijayanand, Pandurangan.

Cell ; 183(5): 1340-1353.e16, 2020 11 25.

Article in English | MEDLINE | ID: mdl-33096020

11.

Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals.

Grifoni, Alba; Weiskopf, Daniela; Ramirez, Sydney I; Mateus, Jose; Dan, Jennifer M; Moderbacher, Carolyn Rydyznski; Rawlings, Stephen A; Sutherland, Aaron; Premkumar, Lakshmanane; Jadi, Ramesh S; Marrama, Daniel; de Silva, Aravinda M; Frazier, April; Carlin, Aaron F; Greenbaum, Jason A; Peters, Bjoern; Krammer, Florian; Smith, Davey M; Crotty, Shane; Sette, Alessandro.

Cell ; 181(7): 1489-1501.e15, 2020 06 25.

Article in English | MEDLINE | ID: mdl-32473127

12.

Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity.

Rydyznski Moderbacher, Carolyn; Ramirez, Sydney I; Dan, Jennifer M; Grifoni, Alba; Hastie, Kathryn M; Weiskopf, Daniela; Belanger, Simon; Abbott, Robert K; Kim, Christina; Choi, Jinyong; Kato, Yu; Crotty, Eleanor G; Kim, Cheryl; Rawlings, Stephen A; Mateus, Jose; Tse, Long Ping Victor; Frazier, April; Baric, Ralph; Peters, Bjoern; Greenbaum, Jason; Ollmann Saphire, Erica; Smith, Davey M; Sette, Alessandro; Crotty, Shane.

Cell ; 183(4): 996-1012.e19, 2020 11 12.

Article in English | MEDLINE | ID: mdl-33010815

13.

Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction.

Wells, Daniel K; van Buuren, Marit M; Dang, Kristen K; Hubbard-Lucey, Vanessa M; Sheehan, Kathleen C F; Campbell, Katie M; Lamb, Andrew; Ward, Jeffrey P; Sidney, John; Blazquez, Ana B; Rech, Andrew J; Zaretsky, Jesse M; Comin-Anduix, Begonya; Ng, Alphonsus H C; Chour, William; Yu, Thomas V; Rizvi, Hira; Chen, Jia M; Manning, Patrice; Steiner, Gabriela M; Doan, Xengie C; Merghoub, Taha; Guinney, Justin; Kolom, Adam; Selinsky, Cheryl; Ribas, Antoni; Hellmann, Matthew D; Hacohen, Nir; Sette, Alessandro; Heath, James R; Bhardwaj, Nina; Ramsdell, Fred; Schreiber, Robert D; Schumacher, Ton N; Kvistborg, Pia; Defranoux, Nadine A.

Cell ; 183(3): 818-834.e13, 2020 10 29.

Article in English | MEDLINE | ID: mdl-33038342

14.

Memory CD8⁺ T cell diversity and B cell responses correlate with protection against SARS-CoV-2 following mRNA vaccination.

Brasu, Nadia; Elia, Ines; Russo, Valentina; Montacchiesi, Gaia; Stabile, Simona Aversano; De Intinis, Carlo; Fesi, Francesco; Gizzi, Katiuscia; Macagno, Marco; Montone, Monica; Mussolin, Benedetta; Grifoni, Alba; Faravelli, Silvia; Marchese, Silvia; Forneris, Federico; De Francesco, Raffaele; Sette, Alessandro; Barnaba, Vincenzo; Sottile, Antonino; Sapino, Anna; Pace, Luigia.

Nat Immunol ; 23(10): 1445-1456, 2022 10.

Article in English | MEDLINE | ID: mdl-36138186

15.

Longitudinal Analysis of the Human B Cell Response to Ebola Virus Infection.

Davis, Carl W; Jackson, Katherine J L; McElroy, Anita K; Halfmann, Peter; Huang, Jessica; Chennareddy, Chakravarthy; Piper, Ashley E; Leung, Yvonne; Albariño, César G; Crozier, Ian; Ellebedy, Ali H; Sidney, John; Sette, Alessandro; Yu, Tianwei; Nielsen, Sandra C A; Goff, Arthur J; Spiropoulou, Christina F; Saphire, Erica Ollman; Cavet, Guy; Kawaoka, Yoshihiro; Mehta, Aneesh K; Glass, Pamela J; Boyd, Scott D; Ahmed, Rafi.

Cell ; 177(6): 1566-1582.e17, 2019 05 30.

Article in English | MEDLINE | ID: mdl-31104840

16.

Metabolic Phenotypes of Response to Vaccination in Humans.

Li, Shuzhao; Sullivan, Nicole L; Rouphael, Nadine; Yu, Tianwei; Banton, Sophia; Maddur, Mohan S; McCausland, Megan; Chiu, Christopher; Canniff, Jennifer; Dubey, Sheri; Liu, Ken; Tran, ViLinh; Hagan, Thomas; Duraisingham, Sai; Wieland, Andreas; Mehta, Aneesh K; Whitaker, Jennifer A; Subramaniam, Shankar; Jones, Dean P; Sette, Alessandro; Vora, Kalpit; Weinberg, Adriana; Mulligan, Mark J; Nakaya, Helder I; Levin, Myron; Ahmed, Rafi; Pulendran, Bali.

Cell ; 169(5): 862-877.e17, 2017 May 18.

Article in English | MEDLINE | ID: mdl-28502771

17.

Inducing broad-based immunity against viruses with pandemic potential.

Sette, Alessandro; Saphire, Erica Ollmann.

Immunity ; 55(5): 738-748, 2022 05 10.

Article in English | MEDLINE | ID: mdl-35545026

18.

Immunodeficiency syndromes differentially impact the functional profile of SARS-CoV-2-specific T cells elicited by mRNA vaccination.

Gao, Yu; Cai, Curtis; Wullimann, David; Niessl, Julia; Rivera-Ballesteros, Olga; Chen, Puran; Lange, Joshua; Cuapio, Angelica; Blennow, Ola; Hansson, Lotta; Mielke, Stephan; Nowak, Piotr; Vesterbacka, Jan; Akber, Mira; Perez-Potti, Andre; Sekine, Takuya; Müller, Thomas R; Boulouis, Caroline; Kammann, Tobias; Parrot, Tiphaine; Muvva, Jagadeeswara Rao; Sobkowiak, Michal; Healy, Katie; Bogdanovic, Gordana; Muschiol, Sandra; Söderdahl, Gunnar; Österborg, Anders; Hellgren, Fredrika; Grifoni, Alba; Weiskopf, Daniela; Sette, Alessandro; Loré, Karin; Sällberg Chen, Margaret; Ljungman, Per; Sandberg, Johan K; Smith, C I Edvard; Bergman, Peter; Ljunggren, Hans-Gustaf; Aleman, Soo; Buggert, Marcus.

Immunity ; 55(9): 1732-1746.e5, 2022 09 13.

Article in English | MEDLINE | ID: mdl-35961317

19.

NIAID workshop on T cell technologies.

Gondré-Lewis, Timothy A; Jiang, Chao; Ford, Mandy L; Koelle, David M; Sette, Alessandro; Shalek, Alex K; Thomas, Paul G.

Nat Immunol ; 24(1): 14-18, 2023 01.

Article in English | MEDLINE | ID: mdl-36596894

20.

Disruption of an antimycobacterial circuit between dendritic and helper T cells in human SPPL2a deficiency.

Kong, Xiao-Fei; Martinez-Barricarte, Ruben; Kennedy, James; Mele, Federico; Lazarov, Tomi; Deenick, Elissa K; Ma, Cindy S; Breton, Gaëlle; Lucero, Kimberly B; Langlais, David; Bousfiha, Aziz; Aytekin, Caner; Markle, Janet; Trouillet, Céline; Jabot-Hanin, Fabienne; Arlehamn, Cecilia S Lindestam; Rao, Geetha; Picard, Capucine; Lasseau, Théo; Latorre, Daniela; Hambleton, Sophie; Deswarte, Caroline; Itan, Yuval; Abarca, Katia; Moraes-Vasconcelos, Dewton; Ailal, Fatima; Ikinciogullari, Aydan; Dogu, Figen; Benhsaien, Ibtihal; Sette, Alessandro; Abel, Laurent; Boisson-Dupuis, Stéphanie; Schröder, Bernd; Nussenzweig, Michel C; Liu, Kang; Geissmann, Frédéric; Tangye, Stuart G; Gros, Philippe; Sallusto, Federica; Bustamante, Jacinta; Casanova, Jean-Laurent.

Nat Immunol ; 19(9): 973-985, 2018 09.

Article in English | MEDLINE | ID: mdl-30127434

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