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1.

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.

Dekker, Job; Alber, Frank; Aufmkolk, Sarah; Beliveau, Brian J; Bruneau, Benoit G; Belmont, Andrew S; Bintu, Lacramioara; Boettiger, Alistair; Calandrelli, Riccardo; Disteche, Christine M; Gilbert, David M; Gregor, Thomas; Hansen, Anders S; Huang, Bo; Huangfu, Danwei; Kalhor, Reza; Leslie, Christina S; Li, Wenbo; Li, Yun; Ma, Jian; Noble, William S; Park, Peter J; Phillips-Cremins, Jennifer E; Pollard, Katherine S; Rafelski, Susanne M; Ren, Bing; Ruan, Yijun; Shav-Tal, Yaron; Shen, Yin; Shendure, Jay; Shu, Xiaokun; Strambio-De-Castillia, Caterina; Vertii, Anastassiia; Zhang, Huaiying; Zhong, Sheng.

Mol Cell ; 83(15): 2624-2640, 2023 08 03.

Article in English | MEDLINE | ID: mdl-37419111

2.

Gene architecture directs splicing outcome in separate nuclear spatial regions.

Tammer, Luna; Hameiri, Ofir; Keydar, Ifat; Roy, Vanessa Rachel; Ashkenazy-Titelman, Asaf; Custódio, Noélia; Sason, Itay; Shayevitch, Ronna; Rodríguez-Vaello, Victoria; Rino, José; Lev Maor, Galit; Leader, Yodfat; Khair, Doha; Aiden, Erez Lieberman; Elkon, Ran; Irimia, Manuel; Sharan, Roded; Shav-Tal, Yaron; Carmo-Fonseca, Maria; Ast, Gil.

Mol Cell ; 82(5): 1021-1034.e8, 2022 03 03.

Article in English | MEDLINE | ID: mdl-35182478

3.

Nuclear RNA-related processes modulate the assembly of cytoplasmic RNA granules.

Angel, Mor; Fleshler, Eden; Atrash, Mohammad Khaled; Kinor, Noa; Benichou, Jennifer I C; Shav-Tal, Yaron.

Nucleic Acids Res ; 52(9): 5356-5375, 2024 May 22.

Article in English | MEDLINE | ID: mdl-38366783

4.

Nucleic acid hybridization-based detection of pathogenic RNA using microscale thermophoresis.

Avivi, Matan Yosef; Touitou, Noga; Rohana, Hanan; Lerrer, Batia; Shav-Tal, Yaron; Peretz, Avi; Cohen, Haim Yosef.

J Biol Chem ; 300(3): 105676, 2024 Mar.

Article in English | MEDLINE | ID: mdl-38278326

5.

Nuclear speckles - a driving force in gene expression.

Faber, Gabriel P; Nadav-Eliyahu, Shani; Shav-Tal, Yaron.

J Cell Sci ; 135(13)2022 07 01.

Article in English | MEDLINE | ID: mdl-35788677

6.

Glucocorticoids enhance chemotherapy-driven stress granule assembly and impair granule dynamics, leading to cell death.

Schwed-Gross, Avital; Hamiel, Hila; Faber, Gabriel P; Angel, Mor; Ben-Yishay, Rakefet; Benichou, Jennifer I C; Ishay-Ronen, Dana; Shav-Tal, Yaron.

J Cell Sci ; 135(14)2022 07 15.

Article in English | MEDLINE | ID: mdl-35713120

7.

CCAT1 lncRNA is chromatin-retained and post-transcriptionally spliced.

Bohrer, Chaya; Varon, Eli; Peretz, Eldar; Reinitz, Gita; Kinor, Noa; Halle, David; Nissan, Aviram; Shav-Tal, Yaron.

Histochem Cell Biol ; 2024 May 19.

Article in English | MEDLINE | ID: mdl-38763947

8.

Utilizing flow cytometry sorting signal width to enrich for cells positive to endogenous gene integration of fluorescent proteins.

Faber, Gabriel P; Hauschner, Hagit; Atrash, Mohammad K; Bilinsky, Liat; Shav-Tal, Yaron.

Cytometry A ; 103(8): 664-669, 2023 08.

Article in English | MEDLINE | ID: mdl-37158244

9.

Speculating on the Roles of Nuclear Speckles: How RNA-Protein Nuclear Assemblies Affect Gene Expression.

Hasenson, Sarah E; Shav-Tal, Yaron.

Bioessays ; 42(10): e2000104, 2020 10.

Article in English | MEDLINE | ID: mdl-32720312

10.

Availability of splicing factors in the nucleoplasm can regulate the release of mRNA from the gene after transcription.

Hochberg-Laufer, Hodaya; Neufeld, Noa; Brody, Yehuda; Nadav-Eliyahu, Shani; Ben-Yishay, Rakefet; Shav-Tal, Yaron.

PLoS Genet ; 15(11): e1008459, 2019 11.

Article in English | MEDLINE | ID: mdl-31765392

11.

Visualizing Nuclear RNA Editing.

Hochberg, Hodaya; Shav-Tal, Yaron.

Trends Biochem Sci ; 42(11): 845-847, 2017 11.

Article in English | MEDLINE | ID: mdl-28965669

12.

Into the basket and beyond: the journey of mRNA through the nuclear pore complex.

Ashkenazy-Titelman, Asaf; Shav-Tal, Yaron; Kehlenbach, Ralph H.

Biochem J ; 477(1): 23-44, 2020 01 17.

Article in English | MEDLINE | ID: mdl-31913454

13.

Cytoplasmic DNA can be detected by RNA fluorescence in situ hybridization.

Greenberg, Eliraz; Hochberg-Laufer, Hodaya; Blanga, Shalev; Kinor, Noa; Shav-Tal, Yaron.

Nucleic Acids Res ; 47(18): e109, 2019 10 10.

Article in English | MEDLINE | ID: mdl-31340014

14.

Uncoupling of nucleo-cytoplasmic RNA export and localization during stress.

Hochberg-Laufer, Hodaya; Schwed-Gross, Avital; Neugebauer, Karla M; Shav-Tal, Yaron.

Nucleic Acids Res ; 47(9): 4778-4797, 2019 05 21.

Article in English | MEDLINE | ID: mdl-30864659

15.

Specific, Sensitive, and Quantitative Detection of HER-2 mRNA Breast Cancer Marker by Fluorescent Light-Up Hybridization Probes.

Saady, Abed; Wojtyniak, Melissa; Varon, Eli; Böttner, Verena; Kinor, Noa; Shav-Tal, Yaron; Ducho, Christian; Fischer, Bilha.

Bioconjug Chem ; 31(4): 1188-1198, 2020 04 15.

Article in English | MEDLINE | ID: mdl-32208683

16.

Visualizing nuclear RNAi activity in single living human cells.

Avivi, Shira; Mor, Amir; Dotan, Iris; Tzadok, Sivan; Kanter, Itamar; Kinor, Noa; Canaani, Dan; Shav-Tal, Yaron.

Proc Natl Acad Sci U S A ; 114(42): E8837-E8846, 2017 10 17.

Article in English | MEDLINE | ID: mdl-29073029

17.

Dynamic Encounters of Genes and Transcripts with the Nuclear Pore.

Ben-Yishay, Rakefet; Ashkenazy, Asaf J; Shav-Tal, Yaron.

Trends Genet ; 32(7): 419-431, 2016 07.

Article in English | MEDLINE | ID: mdl-27185238

18.

The Dbp5 cycle at the nuclear pore complex during mRNA export I: dbp5 mutants with defects in RNA binding and ATP hydrolysis define key steps for Nup159 and Gle1.

Hodge, Christine A; Tran, Elizabeth J; Noble, Kristen N; Alcazar-Roman, Abel R; Ben-Yishay, Rakefet; Scarcelli, John J; Folkmann, Andrew W; Shav-Tal, Yaron; Wente, Susan R; Cole, Charles N.

Genes Dev ; 25(10): 1052-64, 2011 May 15.

Article in English | MEDLINE | ID: mdl-21576265

19.

Measuring transcription dynamics in living cells using a photobleaching approach.

Hochberg, Hodaya; Brody, Yehuda; Shav-Tal, Yaron.

Methods ; 120: 58-64, 2017 05 01.

Article in English | MEDLINE | ID: mdl-28434903

20.

The proteolysis adaptor, NblA, is essential for degradation of the core pigment of the cyanobacterial light-harvesting complex.

Sendersky, Eleonora; Kozer, Noga; Levi, Mali; Moizik, Michael; Garini, Yuval; Shav-Tal, Yaron; Schwarz, Rakefet.

Plant J ; 83(5): 845-52, 2015 Sep.

Article in English | MEDLINE | ID: mdl-26173720

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