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1.

Publisher Correction: Tet2 and Tet3 in B cells are required to repress CD86 and prevent autoimmunity.

Tanaka, Shinya; Ise, Wataru; Inoue, Takeshi; Ito, Ayako; Ono, Chisato; Shima, Yoshihito; Sakakibara, Shuhei; Nakayama, Manabu; Fujii, Kentaro; Miura, Ikuo; Sharif, Jafar; Koseki, Haruhiko; Koni, Pandelakis A; Raman, Indu; Li, Quan-Zhen; Kubo, Masato; Fujiki, Katsunori; Nakato, Ryuichiro; Shirahige, Katsuhiko; Araki, Hiromitsu; Miura, Fumihito; Ito, Takashi; Kawakami, Eiryo; Baba, Yoshihiro; Kurosaki, Tomohiro.

Nat Immunol ; 21(12): 1611-1612, 2020 Dec.

Article in English | MEDLINE | ID: mdl-32958930

2.

Tet2 and Tet3 in B cells are required to repress CD86 and prevent autoimmunity.

Tanaka, Shinya; Ise, Wataru; Inoue, Takeshi; Ito, Ayako; Ono, Chisato; Shima, Yoshihito; Sakakibara, Shuhei; Nakayama, Manabu; Fujii, Kentaro; Miura, Ikuo; Sharif, Jafar; Koseki, Haruhiko; Koni, Pandelakis A; Raman, Indu; Li, Quan-Zhen; Kubo, Masato; Fujiki, Katsunori; Nakato, Ryuichiro; Shirahige, Katsuhiko; Araki, Hiromitsu; Miura, Fumihito; Ito, Takashi; Kawakami, Eiryo; Baba, Yoshihiro; Kurosaki, Tomohiro.

Nat Immunol ; 21(8): 950-961, 2020 08.

Article in English | MEDLINE | ID: mdl-32572241

3.

Loop-extruding Smc5/6 organizes transcription-induced positive DNA supercoils.

Jeppsson, Kristian; Pradhan, Biswajit; Sutani, Takashi; Sakata, Toyonori; Umeda Igarashi, Miki; Berta, Davide Giorgio; Kanno, Takaharu; Nakato, Ryuichiro; Shirahige, Katsuhiko; Kim, Eugene; Björkegren, Camilla.

Mol Cell ; 84(5): 867-882.e5, 2024 Mar 07.

Article in English | MEDLINE | ID: mdl-38295804

4.

Highly rigid H3.1/H3.2-H3K9me3 domains set a barrier for cell fate reprogramming in trophoblast stem cells.

Hada, Masashi; Miura, Hisashi; Tanigawa, Akie; Matoba, Shogo; Inoue, Kimiko; Ogonuki, Narumi; Hirose, Michiko; Watanabe, Naomi; Nakato, Ryuichiro; Fujiki, Katsunori; Hasegawa, Ayumi; Sakashita, Akihiko; Okae, Hiroaki; Miura, Kento; Shikata, Daiki; Arima, Takahiro; Shirahige, Katsuhiko; Hiratani, Ichiro; Ogura, Atsuo.

Genes Dev ; 36(1-2): 84-102, 2022 01 01.

Article in English | MEDLINE | ID: mdl-34992147

5.

Checkpoint-mediated DNA polymerase Îµ exonuclease activity curbing counteracts resection-driven fork collapse.

Pellicanò, Grazia; Al Mamun, Mohammed; Jurado-Santiago, Dolores; Villa-Hernández, Sara; Yin, Xingyu; Giannattasio, Michele; Lanz, Michael C; Smolka, Marcus B; Yeeles, Joseph; Shirahige, Katsuhiko; García-Díaz, Miguel; Bermejo, Rodrigo.

Mol Cell ; 81(13): 2778-2792.e4, 2021 07 01.

Article in English | MEDLINE | ID: mdl-33932350

6.

ATF7-Dependent Epigenetic Changes Are Required for the Intergenerational Effect of a Paternal Low-Protein Diet.

Yoshida, Keisuke; Maekawa, Toshio; Ly, Nhung Hong; Fujita, Shin-Ichiro; Muratani, Masafumi; Ando, Minami; Katou, Yuki; Araki, Hiromitsu; Miura, Fumihito; Shirahige, Katsuhiko; Okada, Mariko; Ito, Takashi; Chatton, Bruno; Ishii, Shunsuke.

Mol Cell ; 78(3): 445-458.e6, 2020 05 07.

Article in English | MEDLINE | ID: mdl-32197065

7.

The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory.

Yoshida, Keisuke; Maekawa, Toshio; Zhu, Yujuan; Renard-Guillet, Claire; Chatton, Bruno; Inoue, Kentaro; Uchiyama, Takeru; Ishibashi, Ken-ichi; Yamada, Takuji; Ohno, Naohito; Shirahige, Katsuhiko; Okada-Hatakeyama, Mariko; Ishii, Shunsuke.

Nat Immunol ; 16(10): 1034-43, 2015 Oct.

Article in English | MEDLINE | ID: mdl-26322480

8.

The maintenance of chromosome structure: positioning and functioning of SMC complexes.

Jeppsson, Kristian; Kanno, Takaharu; Shirahige, Katsuhiko; Sjögren, Camilla.

Nat Rev Mol Cell Biol ; 15(9): 601-14, 2014 Sep.

Article in English | MEDLINE | ID: mdl-25145851

9.

Spo11-accessory proteins link double-strand break sites to the chromosome axis in early meiotic recombination.

Panizza, Silvia; Mendoza, Marco A; Berlinger, Marc; Huang, Lingzhi; Nicolas, Alain; Shirahige, Katsuhiko; Klein, Franz.

Cell ; 146(3): 372-83, 2011 Aug 05.

Article in English | MEDLINE | ID: mdl-21816273

10.

The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores.

Bermejo, Rodrigo; Capra, Thelma; Jossen, Rachel; Colosio, Arianna; Frattini, Camilla; Carotenuto, Walter; Cocito, Andrea; Doksani, Ylli; Klein, Hannah; Gómez-González, Belén; Aguilera, Andrés; Katou, Yuki; Shirahige, Katsuhiko; Foiani, Marco.

Cell ; 146(2): 233-46, 2011 Jul 22.

Article in English | MEDLINE | ID: mdl-21784245

11.

Sororin mediates sister chromatid cohesion by antagonizing Wapl.

Nishiyama, Tomoko; Ladurner, Rene; Schmitz, Julia; Kreidl, Emanuel; Schleiffer, Alexander; Bhaskara, Venugopal; Bando, Masashige; Shirahige, Katsuhiko; Hyman, Anthony A; Mechtler, Karl; Peters, Jan-Michael.

Cell ; 143(5): 737-49, 2010 Nov 24.

Article in English | MEDLINE | ID: mdl-21111234

12.

Cohesin Ubiquitylation and Mobilization Facilitate Stalled Replication Fork Dynamics.

Frattini, Camilla; Villa-Hernández, Sara; Pellicanò, Grazia; Jossen, Rachel; Katou, Yuki; Shirahige, Katsuhiko; Bermejo, Rodrigo.

Mol Cell ; 68(4): 758-772.e4, 2017 Nov 16.

Article in English | MEDLINE | ID: mdl-29129641

13.

Biallelic variants in GTF3C5, a regulator of RNA polymerase III-mediated transcription, cause a multisystem developmental disorder.

Iwata-Otsubo, Aiko; Skraban, Cara M; Yoshimura, Atsunori; Sakata, Toyonori; Alves, Cesar Augusto P; Fiordaliso, Sarah K; Kuroda, Yukiko; Vengoechea, Jaime; Grochowsky, Angela; Ernste, Paige; Lulis, Lauren; Nesbitt, Addie; Tayoun, Ahmad Abou; Gray, Christopher; Towne, Meghan C; Radtke, Kelly; Normand, Elizabeth A; Rhodes, Lindsay; Seiler, Christoph; Shirahige, Katsuhiko; Izumi, Kosuke.

Hum Genet ; 143(3): 437-453, 2024 Mar.

Article in English | MEDLINE | ID: mdl-38520561

14.

Transient Methionine Deprivation Triggers Histone Modification and Potentiates Differentiation of Induced Pluripotent Stem Cells.

Ozawa, Hiroki; Kambe, Azusa; Hibi, Kodai; Murakami, Satoshi; Oikawa, Akira; Handa, Tetsuya; Fujiki, Katsunori; Nakato, Ryuichiro; Shirahige, Katsuhiko; Kimura, Hiroshi; Shiraki, Nobuaki; Kume, Shoen.

Stem Cells ; 41(3): 271-286, 2023 03 17.

Article in English | MEDLINE | ID: mdl-36472570

15.

Genome-organizing factors Top2 and Hmo1 prevent chromosome fragility at sites of S phase transcription.

Bermejo, Rodrigo; Capra, Thelma; Gonzalez-Huici, Victor; Fachinetti, Daniele; Cocito, Andrea; Natoli, Gioacchino; Katou, Yuki; Mori, Hiroshi; Kurokawa, Ken; Shirahige, Katsuhiko; Foiani, Marco.

Cell ; 138(5): 870-84, 2009 Sep 04.

Article in English | MEDLINE | ID: mdl-19737516

16.

Attaching Accessory Devices to the Replisome.

Sutani, Takashi; Shirahige, Katsuhiko.

Mol Cell ; 63(3): 347-8, 2016 08 04.

Article in English | MEDLINE | ID: mdl-27494554

17.

Pericentromeric noncoding RNA changes DNA binding of CTCF and inflammatory gene expression in senescence and cancer.

Miyata, Kenichi; Imai, Yoshinori; Hori, Satoshi; Nishio, Mika; Loo, Tze Mun; Okada, Ryo; Yang, Liying; Nakadai, Tomoyoshi; Maruyama, Reo; Fujii, Risa; Ueda, Koji; Jiang, Li; Zheng, Hao; Toyokuni, Shinya; Sakata, Toyonori; Shirahige, Katsuhiko; Kojima, Ryosuke; Nakayama, Mizuho; Oshima, Masanobu; Nagayama, Satoshi; Seimiya, Hiroyuki; Hirota, Toru; Saya, Hideyuki; Hara, Eiji; Takahashi, Akiko.

Proc Natl Acad Sci U S A ; 118(35)2021 08 31.

Article in English | MEDLINE | ID: mdl-34426493

18.

Inhibition of HDAC8 Reduces the Proliferation of Adult Neural Stem Cells in the Subventricular Zone.

Fukuda, Momoko; Fujita, Yuki; Hino, Yuko; Nakao, Mitsuyoshi; Shirahige, Katsuhiko; Yamashita, Toshihide.

Int J Mol Sci ; 25(5)2024 Feb 22.

Article in English | MEDLINE | ID: mdl-38473789

19.

Codependency and mutual exclusivity for gene community detection from sparse single-cell transcriptome data.

Nakajima, Natsu; Hayashi, Tomoatsu; Fujiki, Katsunori; Shirahige, Katsuhiko; Akiyama, Tetsu; Akutsu, Tatsuya; Nakato, Ryuichiro.

Nucleic Acids Res ; 49(18): e104, 2021 10 11.

Article in English | MEDLINE | ID: mdl-34291282

20.

CRISPR/Cas9 Screening for Identification of Genes Required for the Growth of Ovarian Clear Cell Carcinoma Cells.

Kawabata, Ayako; Hayashi, Tomoatsu; Akasu-Nagayoshi, Yoko; Yamada, Ai; Shimizu, Naomi; Yokota, Naoko; Nakato, Ryuichiro; Shirahige, Katsuhiko; Okamoto, Aikou; Akiyama, Tetsu.

Curr Issues Mol Biol ; 44(4): 1587-1596, 2022 Apr 07.

Article in English | MEDLINE | ID: mdl-35723366

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