Search details
1.
Leveraging protein language models for accurate multiple sequence alignments.
Genome Res
; 33(7): 1145-1153, 2023 07.
Article
in English
| MEDLINE | ID: mdl-37414576
2.
Learning probabilistic protein-DNA recognition codes from DNA-binding specificities using structural mappings.
Genome Res
; 2022 Sep 19.
Article
in English
| MEDLINE | ID: mdl-36123148
3.
Neuronal identities derived by misexpression of the POU IV sensory determinant in a protovertebrate.
Proc Natl Acad Sci U S A
; 119(4)2022 01 25.
Article
in English
| MEDLINE | ID: mdl-35042818
4.
Metabolite discovery through global annotation of untargeted metabolomics data.
Nat Methods
; 18(11): 1377-1385, 2021 11.
Article
in English
| MEDLINE | ID: mdl-34711973
5.
Primate protein-ligand interfaces exhibit significant conservation and unveil human-specific evolutionary drivers.
PLoS Comput Biol
; 19(3): e1010966, 2023 03.
Article
in English
| MEDLINE | ID: mdl-36952575
6.
dSPRINT: predicting DNA, RNA, ion, peptide and small molecule interaction sites within protein domains.
Nucleic Acids Res
; 49(13): e78, 2021 07 21.
Article
in English
| MEDLINE | ID: mdl-33999210
7.
DeMaSk: a deep mutational scanning substitution matrix and its use for variant impact prediction.
Bioinformatics
; 36(22-23): 5322-5329, 2021 Apr 01.
Article
in English
| MEDLINE | ID: mdl-33325500
8.
Improved inference of tandem domain duplications.
Bioinformatics
; 37(Suppl_1): i133-i141, 2021 07 12.
Article
in English
| MEDLINE | ID: mdl-34252920
9.
Comparative genomic analysis reveals varying levels of mammalian adaptation to coronavirus infections.
PLoS Comput Biol
; 17(11): e1009560, 2021 11.
Article
in English
| MEDLINE | ID: mdl-34793437
10.
Sharing DNA-binding information across structurally similar proteins enables accurate specificity determination.
Nucleic Acids Res
; 48(2): e9, 2020 01 24.
Article
in English
| MEDLINE | ID: mdl-31777934
11.
Systematic domain-based aggregation of protein structures highlights DNA-, RNA- and other ligand-binding positions.
Nucleic Acids Res
; 47(2): 582-593, 2019 01 25.
Article
in English
| MEDLINE | ID: mdl-30535108
12.
Recent Advancements in the Development of Modern Probiotics for Restoring Human Gut Microbiome Dysbiosis.
Indian J Microbiol
; 60(1): 12-25, 2020 Mar.
Article
in English
| MEDLINE | ID: mdl-32089570
13.
Integrative analysis unveils new functions for the Drosophila Cutoff protein in noncoding RNA biogenesis and gene regulation.
RNA
; 23(7): 1097-1109, 2017 07.
Article
in English
| MEDLINE | ID: mdl-28420675
14.
Two critical positions in zinc finger domains are heavily mutated in three human cancer types.
PLoS Comput Biol
; 14(6): e1006290, 2018 06.
Article
in English
| MEDLINE | ID: mdl-29953437
15.
Time Course of Blood and Brain Cytokine/Chemokine Levels Following Adolescent Alcohol Exposure and Withdrawal in Rats.
Alcohol Clin Exp Res
; 43(12): 2547-2558, 2019 12.
Article
in English
| MEDLINE | ID: mdl-31589333
16.
Computational solutions for omics data.
Nat Rev Genet
; 14(5): 333-46, 2013 May.
Article
in English
| MEDLINE | ID: mdl-23594911
17.
Domain prediction with probabilistic directional context.
Bioinformatics
; 33(16): 2471-2478, 2017 Aug 15.
Article
in English
| MEDLINE | ID: mdl-28407137
18.
Pervasive variation of transcription factor orthologs contributes to regulatory network evolution.
PLoS Genet
; 11(3): e1005011, 2015 Mar.
Article
in English
| MEDLINE | ID: mdl-25748510
19.
A systematic survey of the Cys2His2 zinc finger DNA-binding landscape.
Nucleic Acids Res
; 43(3): 1965-84, 2015 Feb 18.
Article
in English
| MEDLINE | ID: mdl-25593323
20.
Genome-Wide Detection and Analysis of Multifunctional Genes.
PLoS Comput Biol
; 11(10): e1004467, 2015 Oct.
Article
in English
| MEDLINE | ID: mdl-26436655