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1.

At the (kineto)chore, yeast really are like people.

Swedlow, Jason R.

Cell ; 154(5): 959-961, 2013 Aug 29.

Article in English | MEDLINE | ID: mdl-23993089

2.

OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies.

Moore, Josh; Allan, Chris; Besson, Sébastien; Burel, Jean-Marie; Diel, Erin; Gault, David; Kozlowski, Kevin; Lindner, Dominik; Linkert, Melissa; Manz, Trevor; Moore, Will; Pape, Constantin; Tischer, Christian; Swedlow, Jason R.

Nat Methods ; 18(12): 1496-1498, 2021 12.

Article in English | MEDLINE | ID: mdl-34845388

3.

Compounds enhancing human sperm motility identified using a high-throughput phenotypic screening platform.

Gruber, Franz S; Johnston, Zoe C; Norcross, Neil R; Georgiou, Irene; Wilson, Caroline; Read, Kevin D; Gilbert, Ian H; Swedlow, Jason R; Martins da Silva, Sarah; Barratt, Christopher L R.

Hum Reprod ; 37(3): 466-475, 2022 Mar 01.

Article in English | MEDLINE | ID: mdl-35048946

4.

Nanometre-scale imaging and AI reveal the interior of whole cells.

Swedlow, Jason R; Collinson, Lucy.

Nature ; 599(7883): 39-40, 2021 11.

Article in English | MEDLINE | ID: mdl-34697481

5.

Publisher Correction: Image Data Resource: a bioimage data integration and publication platform.

Williams, Eleanor; Moore, Josh; Li, Simon W; Rustici, Gabriella; Tarkowska, Aleksandra; Chessel, Anatole; Leo, Simone; Antal, Bálint; Ferguson, Richard K; Sarkans, Ugis; Brazma, Alvis; Carazo Salas, Rafael E; Swedlow, Jason R.

Nat Methods ; 15(11): 984, 2018 Nov.

Article in English | MEDLINE | ID: mdl-30287931

6.

QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy.

Nelson, Glyn; Boehm, Ulrike; Bagley, Steve; Bajcsy, Peter; Bischof, Johanna; Brown, Claire M; Dauphin, Aurélien; Dobbie, Ian M; Eriksson, John E; Faklaris, Orestis; Fernandez-Rodriguez, Julia; Ferrand, Alexia; Gelman, Laurent; Gheisari, Ali; Hartmann, Hella; Kukat, Christian; Laude, Alex; Mitkovski, Miso; Munck, Sebastian; North, Alison J; Rasse, Tobias M; Resch-Genger, Ute; Schuetz, Lucas C; Seitz, Arne; Strambio-De-Castillia, Caterina; Swedlow, Jason R; Alexopoulos, Ioannis; Aumayr, Karin; Avilov, Sergiy; Bakker, Gert-Jan; Bammann, Rodrigo R; Bassi, Andrea; Beckert, Hannes; Beer, Sebastian; Belyaev, Yury; Bierwagen, Jakob; Birngruber, Konstantin A; Bosch, Manel; Breitlow, Juergen; Cameron, Lisa A; Chalfoun, Joe; Chambers, James J; Chen, Chieh-Li; Conde-Sousa, Eduardo; Corbett, Alexander D; Cordelieres, Fabrice P; Nery, Elaine Del; Dietzel, Ralf; Eismann, Frank; Fazeli, Elnaz.

J Microsc ; 284(1): 56-73, 2021 10.

Article in English | MEDLINE | ID: mdl-34214188

7.

Nucleome Browser: an integrative and multimodal data navigation platform for 4D Nucleome.

Zhu, Xiaopeng; Zhang, Yang; Wang, Yuchuan; Tian, Dechao; Belmont, Andrew S; Swedlow, Jason R; Ma, Jian.

Nat Methods ; 19(8): 911-913, 2022 08.

Article in English | MEDLINE | ID: mdl-35864167

8.

The Image Data Resource: A Bioimage Data Integration and Publication Platform.

Williams, Eleanor; Moore, Josh; Li, Simon W; Rustici, Gabriella; Tarkowska, Aleksandra; Chessel, Anatole; Leo, Simone; Antal, Bálint; Ferguson, Richard K; Sarkans, Ugis; Brazma, Alvis; Salas, Rafael E Carazo; Swedlow, Jason R.

Nat Methods ; 14(8): 775-781, 2017 Aug.

Article in English | MEDLINE | ID: mdl-28775673

9.

Author Correction: QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy.

Boehm, Ulrike; Nelson, Glyn; Brown, Claire M; Bagley, Steve; Bajcsy, Peter; Bischof, Johanna; Dauphin, Aurelien; Dobbie, Ian M; Eriksson, John E; Faklaris, Orestis; Fernandez-Rodriguez, Julia; Ferrand, Alexia; Gelman, Laurent; Gheisari, Ali; Hartmann, Hella; Kukat, Christian; Laude, Alex; Mitkovski, Miso; Munck, Sebastian; North, Alison J; Rasse, Tobias M; Resch-Genger, Ute; Schuetz, Lucas C; Seitz, Arne; Strambio-De-Castillia, Caterina; Swedlow, Jason R; Nitschke, Roland.

Nat Methods ; 19(2): 256, 2022 Feb.

Article in English | MEDLINE | ID: mdl-34980905

10.

MITI minimum information guidelines for highly multiplexed tissue images.

Schapiro, Denis; Yapp, Clarence; Sokolov, Artem; Reynolds, Sheila M; Chen, Yu-An; Sudar, Damir; Xie, Yubin; Muhlich, Jeremy; Arias-Camison, Raquel; Arena, Sarah; Taylor, Adam J; Nikolov, Milen; Tyler, Madison; Lin, Jia-Ren; Burlingame, Erik A; Chang, Young H; Farhi, Samouil L; Thorsson, Vésteinn; Venkatamohan, Nithya; Drewes, Julia L; Pe'er, Dana; Gutman, David A; Herrmann, Markus D; Gehlenborg, Nils; Bankhead, Peter; Roland, Joseph T; Herndon, John M; Snyder, Michael P; Angelo, Michael; Nolan, Garry; Swedlow, Jason R; Schultz, Nikolaus; Merrick, Daniel T; Mazzili, Sarah A; Cerami, Ethan; Rodig, Scott J; Santagata, Sandro; Sorger, Peter K.

Nat Methods ; 19(3): 262-267, 2022 03.

Article in English | MEDLINE | ID: mdl-35277708

11.

Killing with proficiency: Integrated post-translational regulation of an offensive Type VI secretion system.

Ostrowski, Adam; Cianfanelli, Francesca R; Porter, Michael; Mariano, Giuseppina; Peltier, Julien; Wong, Jun Jie; Swedlow, Jason R; Trost, Matthias; Coulthurst, Sarah J.

PLoS Pathog ; 14(7): e1007230, 2018 07.

Article in English | MEDLINE | ID: mdl-30052683

12.

A global view of standards for open image data formats and repositories.

Swedlow, Jason R; Kankaanpää, Pasi; Sarkans, Ugis; Goscinski, Wojtek; Galloway, Graham; Malacrida, Leonel; Sullivan, Ryan P; Härtel, Steffen; Brown, Claire M; Wood, Christopher; Keppler, Antje; Paina, Federica; Loos, Ben; Zullino, Sara; Longo, Dario Livio; Aime, Silvio; Onami, Shuichi.

Nat Methods ; 18(12): 1440-1446, 2021 12.

Article in English | MEDLINE | ID: mdl-33948027

13.

QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy.

Boehm, Ulrike; Nelson, Glyn; Brown, Claire M; Bagley, Steve; Bajcsy, Peter; Bischof, Johanna; Dauphin, Aurelien; Dobbie, Ian M; Eriksson, John E; Faklaris, Orestis; Fernandez-Rodriguez, Julia; Ferrand, Alexia; Gelman, Laurent; Gheisari, Ali; Hartmann, Hella; Kukat, Christian; Laude, Alex; Mitkovski, Miso; Munck, Sebastian; North, Alison J; Rasse, Tobias M; Resch-Genger, Ute; Schuetz, Lucas C; Seitz, Arne; Strambio-De-Castillia, Caterina; Swedlow, Jason R; Nitschke, Roland.

Nat Methods ; 18(12): 1423-1426, 2021 12.

Article in English | MEDLINE | ID: mdl-34021279

14.

REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.

Sarkans, Ugis; Chiu, Wah; Collinson, Lucy; Darrow, Michele C; Ellenberg, Jan; Grunwald, David; Hériché, Jean-Karim; Iudin, Andrii; Martins, Gabriel G; Meehan, Terry; Narayan, Kedar; Patwardhan, Ardan; Russell, Matthew Robert Geoffrey; Saibil, Helen R; Strambio-De-Castillia, Caterina; Swedlow, Jason R; Tischer, Christian; Uhlmann, Virginie; Verkade, Paul; Barlow, Mary; Bayraktar, Omer; Birney, Ewan; Catavitello, Cesare; Cawthorne, Christopher; Wagner-Conrad, Stephan; Duke, Elizabeth; Paul-Gilloteaux, Perrine; Gustin, Emmanuel; Harkiolaki, Maria; Kankaanpää, Pasi; Lemberger, Thomas; McEntyre, Jo; Moore, Josh; Nicholls, Andrew W; Onami, Shuichi; Parkinson, Helen; Parsons, Maddy; Romanchikova, Marina; Sofroniew, Nicholas; Swoger, Jim; Utz, Nadine; Voortman, Lenard M; Wong, Frances; Zhang, Peijun; Kleywegt, Gerard J; Brazma, Alvis.

Nat Methods ; 18(12): 1418-1422, 2021 12.

Article in English | MEDLINE | ID: mdl-34021280

15.

BOD1 Is Required for Cognitive Function in Humans and Drosophila.

Esmaeeli-Nieh, Sahar; Fenckova, Michaela; Porter, Iain M; Motazacker, M Mahdi; Nijhof, Bonnie; Castells-Nobau, Anna; Asztalos, Zoltan; Weißmann, Robert; Behjati, Farkhondeh; Tzschach, Andreas; Felbor, Ute; Scherthan, Harry; Sayfati, Seyed Morteza; Ropers, H Hilger; Kahrizi, Kimia; Najmabadi, Hossein; Swedlow, Jason R; Schenck, Annette; Kuss, Andreas W.

PLoS Genet ; 12(5): e1006022, 2016 05.

Article in English | MEDLINE | ID: mdl-27166630

16.

CDK-dependent phosphorylation of PHD1 on serine 130 alters its substrate preference in cells.

Ortmann, Brian; Bensaddek, Dalila; Carvalhal, Sara; Moser, Sandra C; Mudie, Sharon; Griffis, Eric R; Swedlow, Jason R; Lamond, Angus I; Rocha, Sonia.

J Cell Sci ; 129(1): 191-205, 2016 Jan 01.

Article in English | MEDLINE | ID: mdl-26644182

17.

Metadata management for high content screening in OMERO.

Li, Simon; Besson, Sébastien; Blackburn, Colin; Carroll, Mark; Ferguson, Richard K; Flynn, Helen; Gillen, Kenneth; Leigh, Roger; Lindner, Dominik; Linkert, Melissa; Moore, William J; Ramalingam, Balaji; Rozbicki, Emil; Rustici, Gabriella; Tarkowska, Aleksandra; Walczysko, Petr; Williams, Eleanor; Allan, Chris; Burel, Jean-Marie; Moore, Josh; Swedlow, Jason R.

Methods ; 96: 27-32, 2016 Mar 01.

Article in English | MEDLINE | ID: mdl-26476368

18.

A call for public archives for biological image data.

Ellenberg, Jan; Swedlow, Jason R; Barlow, Mary; Cook, Charles E; Sarkans, Ugis; Patwardhan, Ardan; Brazma, Alvis; Birney, Ewan.

Nat Methods ; 15(11): 849-854, 2018 11.

Article in English | MEDLINE | ID: mdl-30377375

19.

Publishing and sharing multi-dimensional image data with OMERO.

Burel, Jean-Marie; Besson, Sébastien; Blackburn, Colin; Carroll, Mark; Ferguson, Richard K; Flynn, Helen; Gillen, Kenneth; Leigh, Roger; Li, Simon; Lindner, Dominik; Linkert, Melissa; Moore, William J; Ramalingam, Balaji; Rozbicki, Emil; Tarkowska, Aleksandra; Walczysko, Petr; Allan, Chris; Moore, Josh; Swedlow, Jason R.

Mamm Genome ; 26(9-10): 441-7, 2015 Oct.

Article in English | MEDLINE | ID: mdl-26223880

20.

Biological imaging software tools.

Eliceiri, Kevin W; Berthold, Michael R; Goldberg, Ilya G; Ibáñez, Luis; Manjunath, B S; Martone, Maryann E; Murphy, Robert F; Peng, Hanchuan; Plant, Anne L; Roysam, Badrinath; Stuurman, Nico; Stuurmann, Nico; Swedlow, Jason R; Tomancak, Pavel; Carpenter, Anne E.

Nat Methods ; 9(7): 697-710, 2012 Jun 28.

Article in English | MEDLINE | ID: mdl-22743775

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