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1.
Small ; 20(26): e2308950, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38441226

ABSTRACT

Monoclonal antibody (mAb) discovery plays a prominent role in diagnostic and therapeutic applications. Droplet microfluidics has become a standard technology for high-throughput screening of antibody-producing cells due to high droplet single-cell confinement frequency and rapid analysis and sorting of the cells of interest with their secreted mAbs. In this work, a new method is described for on-demand co-encapsulation of cells that eliminates the difficulties associated with washing in between consecutive steps inside the droplets and enables the washing and addition of fresh media. The new platform identifies hybridoma cells that are expressing antibodies of interest using antibody-characterization assays to find the best-performing or rare-cell antibody candidates.


Subject(s)
Antibodies, Monoclonal , Microfluidics , Antibodies, Monoclonal/chemistry , Microfluidics/methods , Animals , Hybridomas/cytology , Single-Cell Analysis/methods , Mice , Humans , Automation , Microfluidic Analytical Techniques/instrumentation , Microfluidic Analytical Techniques/methods
2.
Am J Transplant ; 23(2): 291-293, 2023 02.
Article in English | MEDLINE | ID: mdl-36804136

ABSTRACT

AL amyloidosis is a rare condition characterized by the overproduction of an unstable free light chain, protein misfolding and aggregation, and extracellular deposition that can progress to multiorgan involvement and failure. To our knowledge, this is the first worldwide report to describe triple organ transplantation for AL amyloidosis and triple organ transplantation using thoracoabdominal normothermic regional perfusion recovery with a donation from a circulatory death (DCD) donor. The recipient was a 40-year-old man with multiorgan AL amyloidosis with a terminal prognosis without multiorgan transplantation. An appropriate DCD donor was selected for sequential heart, liver, and kidney transplants via our center's thoracoabdominal normothermic regional perfusion pathway. The liver was additionally placed on an ex vivo normothermic machine perfusion, and the kidney was maintained on hypothermic machine perfusion while awaiting implantation. The heart transplant was completed first (cold ischemic time [CIT]: 131 minutes), followed by the liver transplant (CIT: 87 minutes, normothermic machine perfusion: 301 minutes). Kidney transplantation was performed the following day (CIT: 1833 minutes). He is 8 months posttransplant without evidence of heart, liver, or kidney graft dysfunction or rejection. This case highlights the feasibility of normothermic recovery and storage modalities for DCD donors, which can expand transplant opportunities for allografts previously not considered for multiorgan transplantations.


Subject(s)
Immunoglobulin Light-chain Amyloidosis , Kidney Transplantation , Tissue and Organ Procurement , Male , Humans , Adult , Organ Preservation , Tissue Donors , Perfusion , Liver , Death
3.
Genome Res ; 30(6): 898-909, 2020 06.
Article in English | MEDLINE | ID: mdl-32540955

ABSTRACT

Long-range sequencing information is required for haplotype phasing, de novo assembly, and structural variation detection. Current long-read sequencing technologies can provide valuable long-range information but at a high cost with low accuracy and high DNA input requirements. We have developed a single-tube Transposase Enzyme Linked Long-read Sequencing (TELL-seq) technology, which enables a low-cost, high-accuracy, and high-throughput short-read second-generation sequencer to generate over 100 kb of long-range sequencing information with as little as 0.1 ng input material. In a PCR tube, millions of clonally barcoded beads are used to uniquely barcode long DNA molecules in an open bulk reaction without dilution and compartmentation. The barcoded linked-reads are used to successfully assemble genomes ranging from microbes to human. These linked-reads also generate megabase-long phased blocks and provide a cost-effective tool for detecting structural variants in a genome, which are important to identify compound heterozygosity in recessive Mendelian diseases and discover genetic drivers and diagnostic biomarkers in cancers.


Subject(s)
Gene Library , High-Throughput Nucleotide Sequencing , Sequence Analysis, DNA , Computational Biology/methods , DNA Barcoding, Taxonomic/methods , Genetic Variation , Genome, Human , Genomics/methods , HLA Antigens/genetics , Haplotypes , High-Throughput Nucleotide Sequencing/methods , High-Throughput Nucleotide Sequencing/standards , Humans , Sequence Analysis, DNA/methods , Sequence Analysis, DNA/standards , Workflow
4.
Nutr Cancer ; 74(5): 1701-1711, 2022.
Article in English | MEDLINE | ID: mdl-34353196

ABSTRACT

Compelling animal studies report increased intestinal permeability, inflammation, and colorectal carcinogenesis with exposure to certain emulsifiers commonly added to processed foods, but human data are lacking. Highly processed food consumption is also associated with obesity and higher risk of chronic diseases. We cross-sectionally examined the association of emulsifier and highly processed food consumption estimated from six 24-h dietary recalls among 588 U.S. men and women over one year, with biomarkers of intestinal permeability and inflammation measured from two fasting blood samples collected six months apart. In multivariable-adjusted generalized linear models, greater emulsifier intake (g/d) was not associated with antibodies to flagellin (P-trend = 0.88), lipopolysaccharide (LPS) (P-trend = 0.56), or the combined total thereof (P-trend = 0.65) but was positively associated with an inflammatory biomarker, glycoprotein acetyls (GlycA) (P-trend = 0.02). Highly processed food intake (% kcal/d) was associated with higher anti-LPS antibodies (P-trend = 0.001) and total anti-flagellin and anti-LPS antibodies (P-trend = 0.005) but not with other biomarkers, whereas processed food intake expressed as % g/d was associated with higher GlycA (P-trend = 0.02). Our findings suggest that, broadly, highly processed food consumption may be associated with intestinal permeability biomarkers, and both emulsifier and highly processed food intakes may be associated with inflammation. Additional studies are warranted to further evaluate these relationships.Supplemental data for this article is available online at https://doi.org/10.1080/01635581.2021.1957947.


Subject(s)
Diet , Neoplasms , Animals , Biomarkers , Eating , Energy Intake , Fast Foods , Female , Humans , Inflammation , Permeability
5.
Mol Cell Proteomics ; 18(9): 1864-1879, 2019 09.
Article in English | MEDLINE | ID: mdl-31262998

ABSTRACT

Consumption of refined high-fat, low-fiber diets promotes development of obesity and its associated consequences. Although genetics play an important role in dictating susceptibility to such obesogenic diets, mice with nearly uniform genetics exhibit marked heterogeneity in their extent of obesity in response to such diets. This suggests non-genetic determinants play a role in diet-induced obesity. Hence, we sought to identify parameters that predict, and/or correlate with, development of obesity in response to an obesogenic diet. We assayed behavior, metabolic parameters, inflammatory markers/cytokines, microbiota composition, and the fecal metaproteome, in a cohort of mice (n = 50) prior to, and the 8 weeks following, administration of an obesogenic high-fat low-fiber diet. Neither behavioral testing nor quantitation of inflammatory markers broadly predicted severity of diet-induced obesity. Although, the small subset of mice that exhibited basal elevations in serum IL-6 (n = 5) were among the more obese mice in the cohort. While fecal microbiota composition changed markedly in response to the obesogenic diet, it lacked the ability to predict which mice were relative prone or resistant to obesity. In contrast, fecal metaproteome analysis revealed functional and taxonomic differences among the proteins associated with proneness to obesity. Targeted interrogation of microbiota composition data successfully validated the taxonomic differences seen in the metaproteome. Although future work will be needed to determine the breadth of applicability of these associations to other cohorts of animals and humans, this study nonetheless highlights the potential power of gut microbial proteins to predict and perhaps impact development of obesity.


Subject(s)
Feces/microbiology , Gastrointestinal Microbiome/physiology , Obesity/etiology , Proteome/metabolism , Animals , Body Composition , Diet, High-Fat/adverse effects , Diet, Western/adverse effects , Female , Flagellin/metabolism , Gastrointestinal Microbiome/genetics , Immunoglobulin A/blood , Inflammation Mediators/metabolism , Lipocalin-2/metabolism , Metabolic Syndrome/etiology , Metabolic Syndrome/microbiology , Mice, Inbred C57BL , Obesity/microbiology , Proteome/analysis , RNA, Ribosomal, 16S
6.
J Nutr ; 150(8): 2175-2182, 2020 08 01.
Article in English | MEDLINE | ID: mdl-32455424

ABSTRACT

BACKGROUND: Environmental enteric dysfunction (EED), characterized by altered intestinal permeability/inflammation, microbial translocation, and systemic inflammation (SI), may be a significant contributor to micronutrient deficiencies and poor growth in infants from low-resource settings. OBJECTIVE: We examined associations among EED, SI, growth, and iron status at 6 mo of age. METHODS: We performed a cross-sectional analysis of 6-mo-old infants (nĀ =Ā 548) enrolled in a Ugandan birth-cohort study (NCT04233944). EED was assessed via serum concentrations of anti-flagellin and anti- LPS immunoglobulins (Igs); SI was assessed via serum concentrations of ƉĀ‘1-acid glycoprotein (AGP) and C-reactive protein (CRP); iron status was assessed via serum concentrations of hemoglobin (Hb), soluble transferrin receptor (sTfR), and ferritin. Associations were assessed using adjusted linear regression analysis. RESULTS: At 6 mo, Ć¢ĀˆĀ¼35% of infants were stunted [length-for-age z score (LAZ) < -2] and Ć¢ĀˆĀ¼53% were anemic [hemoglobin (Hb) <11.0 g/dL]. Nearly half (Ć¢ĀˆĀ¼46%) had elevated AGP (>1 g/L) and Ć¢ĀˆĀ¼30% had elevated CRP (>5 mg/L). EED and SI biomarkers were significantly correlated (rĀ =Ā 0.142-0.193, PĀ <Ā 0.001 for all). In adjusted linear regression models, which included adjustments for SI, higher anti-flagellin IgA, anti-LPS IgA, and anti-LPS IgG concentrations were each significantly associated with lower LAZ [Ɵ (95% CI): -0.21 (-0.41, 0.00), -0.23 (-0.44, -0.03), and -0.33 (-0.58, -0.09)]. Furthermore, higher anti-flagellin IgA, anti-flagellin IgG, and anti-LPS IgA concentrations were significantly associated with lower Hb [Ɵ (95% CI): -0.24 (-0.45, -0.02), -0.58 (-1.13, 0.00), and -0.26 (-0.51, 0.00)] and higher anti-flagellin IgG and anti-LPS IgG concentrations were significantly associated with higher sTfR [Ɵ (95% CI): 2.31 (0.34, 4.28) and 3.13 (0.75, 5.51)]. CONCLUSIONS: EED is associated with both low LAZ and iron status in 6-mo-old infants. Further research on the mechanisms by which EED affects growth and micronutrient status is warranted.


Subject(s)
Anemia, Iron-Deficiency/epidemiology , Anemia, Iron-Deficiency/etiology , Child Development , Intestinal Diseases/microbiology , Intestinal Diseases/pathology , Rural Population , Adult , Cohort Studies , Female , Gastrointestinal Microbiome , Humans , Infant , Inflammation , Intestinal Diseases/epidemiology , Male , Uganda/epidemiology , Young Adult
7.
Am J Physiol Endocrinol Metab ; 317(6): E1121-E1130, 2019 12 01.
Article in English | MEDLINE | ID: mdl-31573841

ABSTRACT

Metformin beneficially impacts several aspects of metabolic syndrome including dysglycemia, obesity, and liver dysfunction, thus making it a widely used frontline treatment for early-stage type 2 diabetes, which is associated with these disorders. Several mechanisms of action for metformin have been proposed, including that it acts as an anti-inflammatory agent, possibly as a result of its impact on intestinal microbiota. In accord with this possibility, we observed herein that, in mice with diet-induced metabolic syndrome, metformin impacts the gut microbiota by preventing its encroachment upon the host, a feature of metabolic syndrome in mice and humans. However, the ability of metformin to beneficially impact metabolic syndrome in mice was not markedly altered by reduction or elimination of gut microbiota, achieved by the use of antibiotics or germfree mice. Although reducing or eliminating microbiota by itself suppressed diet-induced dysglycemia, other features of metabolic syndrome including obesity, hepatic steatosis, and low-grade inflammation remained suppressed by metformin in the presence or absence of gut microbiota. These results support a role for anti-inflammatory activity of metformin, irrespective of gut microbiota, in driving some of the beneficial impacts of this drug on metabolic syndrome.


Subject(s)
Gastrointestinal Microbiome/drug effects , Hypoglycemic Agents/pharmacology , Inflammation/metabolism , Liver/drug effects , Metabolic Syndrome/metabolism , Metformin/pharmacology , Ampicillin/pharmacology , Animals , Anti-Bacterial Agents/pharmacology , Diet, High-Fat , Fatty Liver/metabolism , Fatty Liver/microbiology , Gastrointestinal Microbiome/physiology , Germ-Free Life , Hyperglycemia/metabolism , Hyperglycemia/microbiology , Inflammation/microbiology , Liver/metabolism , Metabolic Syndrome/microbiology , Mice , Neomycin/pharmacology , Obesity/metabolism , Obesity/microbiology
9.
J Pediatr ; 210: 34-40.e1, 2019 07.
Article in English | MEDLINE | ID: mdl-30952509

ABSTRACT

OBJECTIVE: To examine whether daily zinc and/or multivitamin supplementation reduce biomarkers of environmental enteric dysfunction (EED), systemic inflammation, or markers of growth in a sample of infants from Dar es Salaam, Tanzania. STUDY DESIGN: Subgroup analysis of infants participating in a randomized, double-blind, placebo-controlled trial received daily oral supplementation of zinc, multivitamins, zincĀ +Ā multivitamins, or placebo for 18Ā months starting at 6Ā weeks of age. EED (anti-flagellin and anti-lipopolysaccharide immunoglobulins), systemic inflammation (C-reactive protein and alpha-1-acid glycoprotein), and growth biomarkers (insulin-like growth factor-1 and insulin-like growth factor binding protein-3) were measured via enzyme-linked immunosorbent assay in a subsample of 590 infants at 6Ā weeks and 6Ā months of age. EED biomarkers also were measured in 162 infants at 12Ā months of age. RESULTS: With the exception of anti-lipopolysaccharide IgG concentrations, which were significantly greater in infants who received multivitamins compared with those who did not (1.41Ā Ā±Ā 0.61 vs 1.26Ā Ā±Ā 0.65, PĀ =Ā .006), and insulin-like growth factor binding protein-3 concentrations, which were significantly lower in children who received zinc compared with those who did not (981.13Ā Ā±Ā 297.59 vs 1019.10Ā Ā±Ā 333.01, PĀ =Ā .03), at 6Ā months of age, we did not observe any significant treatment effects of zinc or multivitamins on EED, systemic inflammation, or growth biomarkers. CONCLUSIONS: Neither zinc nor multivitamin supplementation ameliorated markers of EED or systemic inflammation during infancy. Other interventions should be prioritized for future trials. TRIAL REGISTRATION: Clinicaltrials.gov: NCT00421668.


Subject(s)
Dietary Supplements , Inflammation/blood , Inflammation/drug therapy , Intestinal Diseases/blood , Intestinal Diseases/drug therapy , Intestine, Small , Vitamins/therapeutic use , Zinc/therapeutic use , Biomarkers/blood , Double-Blind Method , Female , Humans , Infant , Inflammation/complications , Intestinal Diseases/complications , Male , Tanzania , Treatment Outcome
10.
Transpl Infect Dis ; 21(1): e13002, 2019 Feb.
Article in English | MEDLINE | ID: mdl-30222242

ABSTRACT

Every year the number of patients waiting for a heart transplant increases faster than the number of available donor organs. Some potential donor organs are from donors with active communicable diseases, including hepatitis C virus (HCV), potentially making donation prohibitive. The advent of direct-acting antiviral agents for HCV has drastically changed the treatment of HCV. Recently, these agents have been used to treat HCV in organ donor recipients who acquired the disease from the donor organ. We report a case of heart-kidney transplantation from an HCV viremic donor to HCV negative recipient with successful treatment and sustained virologic response.


Subject(s)
Antiviral Agents/therapeutic use , Heart Transplantation/adverse effects , Hepacivirus/isolation & purification , Hepatitis C/drug therapy , Kidney Transplantation/adverse effects , Living Donors , Viremia/drug therapy , Allografts/virology , Delayed Graft Function/therapy , Delayed Graft Function/virology , Follow-Up Studies , Heart/virology , Heart Transplantation/methods , Hepatitis C/transmission , Hepatitis C/virology , Humans , Kidney/virology , Kidney Failure, Chronic/surgery , Kidney Transplantation/methods , Male , Middle Aged , Recurrence , Renal Replacement Therapy , Treatment Outcome , Viral Load , Viremia/transmission , Viremia/virology
11.
J Pediatr Gastroenterol Nutr ; 66(6): 953-959, 2018 Jun.
Article in English | MEDLINE | ID: mdl-29613921

ABSTRACT

BACKGROUND: Chronic exposure to enteropathogens may result in environmental enteric dysfunction (EED), a subclinical condition associated with poor child growth. Growth faltering is strongly associated with poor neurodevelopment, and occurs during sensitive periods of postnatal brain development. We investigated the role of novel EED biomarkers, systemic inflammation, and micronutrient status on neurodevelopment in Tanzanian children. METHODS: Non-stunted subjects with 6-week and 6-month blood samples and neurodevelopmental measures (nĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ107) were included in this study. Samples were tested for biomarkers of gastrointestinal function (citrulline, antibodies to lipopolysaccharide, and flagellin), micronutrient status (iron, retinol binding protein [RBP], and vitamin D), systemic inflammation (C-reactive protein [CRP] and alpha-1-acid glycoprotein), and growth (insulin-like growth factor and insulin-like growth factor binding protein 3). RESULTS: Cognitive scores at 15 months were associated with higher concentrations of 6-month anti-lipopolysaccharide IgG (ĆŸĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ1.95, PĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.02), anti-flagellin IgA (ĆŸĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ2.41, PĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.04), and IgG (ĆŸĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ2.99, PĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.009). Higher receptive language scores were positively associated with anti-flagellin IgG (ĆŸĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.95, PĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.05), and receptive language and gross motor scores were positively associated with citrulline at 6 months (ĆŸĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.09, PĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.02; ĆŸĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.10, PĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.03, respectively). Gross motor scores were positively associated with RBP at 6 months (ĆŸĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ1.70, PĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.03). Markers of systemic inflammation were not significantly associated with neurodevelopment. CONCLUSIONS: Plasma citrulline, a marker of gastrointestinal mucosal surface area, and vitamin A status were associated with higher gross motor development scores. Novel markers for EED, but not inflammation, were positively associated with cognitive scores, suggesting a possible mechanistic pathway involving immune response and neuroprotection.


Subject(s)
Biomarkers/blood , Gastrointestinal Diseases/complications , Neurodevelopmental Disorders/etiology , Environment , Female , Follow-Up Studies , Gastrointestinal Diseases/blood , Gastrointestinal Diseases/diagnosis , Humans , Infant , Infant, Newborn , Inflammation/blood , Inflammation/complications , Inflammation/diagnosis , Male , Neurodevelopmental Disorders/diagnosis , Risk Factors , Tanzania
12.
BMC Med ; 15(1): 72, 2017 04 04.
Article in English | MEDLINE | ID: mdl-28372583

ABSTRACT

BACKGROUND: Leakage of bacterial products across the gut barrier may play a role in liver diseases which often precede the development of liver cancer. However, human studies, particularly from prospective settings, are lacking. METHODS: We used a case-control study design nested within a large prospective cohort to assess the association between circulating levels of anti-lipopolysaccharide (LPS) and anti-flagellin immunoglobulin A (IgA) and G (IgG) (reflecting long-term exposures to LPS and flagellin, respectively) and risk of hepatocellular carcinoma. A total of 139 men and women diagnosed with hepatocellular carcinoma between 1992 and 2010 were matched to 139 control subjects. Multivariable rate ratios (RRs), including adjustment for potential confounders, hepatitis B/C positivity, and degree of liver dysfunction, were calculated with conditional logistic regression. RESULTS: Antibody response to LPS and flagellin was associated with a statistically significant increase in the risk of hepatocellular carcinoma (highest vs. lowest quartile: RR = 11.76, 95% confidence interval = 1.70-81.40; P trend = 0.021). This finding did not vary substantially by time from enrollment to diagnosis, and did not change after adjustment for chronic infection with hepatitis B and C viruses. CONCLUSIONS: These novel findings, based on exposures up to several years prior to diagnosis, support a role for gut-derived bacterial products in hepatocellular carcinoma development. Further study into the role of gut barrier failure and exposure to bacterial products in liver diseases is warranted.


Subject(s)
Carcinoma, Hepatocellular/blood , Flagellin/immunology , Immunoglobulin A/blood , Immunoglobulin G/blood , Lipopolysaccharides/immunology , Liver Neoplasms/blood , Adult , Aged , Carcinoma, Hepatocellular/immunology , Carcinoma, Hepatocellular/microbiology , Case-Control Studies , Cohort Studies , Female , Humans , Immunoglobulin A/immunology , Immunoglobulin G/immunology , Liver Neoplasms/immunology , Liver Neoplasms/microbiology , Male , Middle Aged , Prospective Studies , Risk Factors
13.
J Pediatr Gastroenterol Nutr ; 64(1): 104-108, 2017 01.
Article in English | MEDLINE | ID: mdl-27347720

ABSTRACT

OBJECTIVE: Diarrheal diseases are a leading cause of morbidity and mortality worldwide, but the etiology of diarrhea and its relation to nutritional outcomes in resource-limited settings is poorly defined. We sought to determine the etiology of community-acquired diarrhea in Tanzanian infants and to assess the association with anthropometrics and novel intestinal biomarkers. METHODS: A convenience sample of infants in a trial of zinc and/or multivitamin supplementation in Tanzania was selected. Subjects were enrolled at age 6 weeks and studied for 18 months. Stool samples were obtained from children with acute diarrhea. A novel, polymerase chain reaction-based TaqMan array was used to screen stool for 15 enteropathogens. A subset of subjects had serum gastrointestinal biomarkers measured. RESULTS: One hundred twenty-three subjects with diarrhea were enrolled. The mean Ā± SD age at stool sample collection was 12.4Ć¢Ā€ĀŠĀ±Ć¢Ā€ĀŠ3.9 months. Thirty-five enteropathogens were identified in 34 (27.6%) subjects: 11 rotavirus, 9 Cryptosporidium spp, 7 Shigella spp, 3 Campylobacter jejuni/coli, 3 heat stable-enterotoxigenic Escherichia coli, and 2 enteropathogenic E coli. Subjects with any identified enteropathogen had significantly lower weight-for-length z scores (-0.55Ć¢Ā€ĀŠĀ±Ć¢Ā€ĀŠ1.10 vs 0.03Ć¢Ā€ĀŠĀ±Ć¢Ā€ĀŠ1.30, PĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.03) at the final clinic visit than those without an identified pathogen. Fifty of the 123 subjects (40.7%) had serum analyzed for antibodies to lipopolysaccharide (LPS) and flagellin. Subjects with any identified enteropathogen had lower immunoglobulin (IgA) antibodies to LPS (0.75Ć¢Ā€ĀŠĀ±Ć¢Ā€ĀŠ0.27 vs 1.13Ć¢Ā€ĀŠĀ±Ć¢Ā€ĀŠ0.77, PĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.01) and flagellin (0.52Ć¢Ā€ĀŠĀ±Ć¢Ā€ĀŠ0.16 vs 0.73Ć¢Ā€ĀŠĀ±Ć¢Ā€ĀŠ0.47, PĆ¢Ā€ĀŠ=Ć¢Ā€ĀŠ0.02) than those without an identified pathogen. CONCLUSIONS: This quantitative polymerase chain reaction method may allow identification of enteropathogens that place children at higher risk for suboptimal growth. IgA anti-LPS and flagellin antibodies hold promise as emerging intestinal biomarkers.


Subject(s)
Diarrhea/etiology , Flagellin/immunology , Gastrointestinal Microbiome , Growth Disorders/etiology , Immunoglobulin A/blood , Intestines , Lipopolysaccharides/immunology , Biomarkers/blood , Body Weight , Campylobacter/growth & development , Cryptosporidium/growth & development , Diarrhea/microbiology , Diarrhea/parasitology , Diarrhea/virology , Enteropathogenic Escherichia coli/growth & development , Feces/microbiology , Feces/parasitology , Feces/virology , Female , Growth Disorders/microbiology , Growth Disorders/parasitology , Growth Disorders/virology , Humans , Infant , Infections/complications , Intestinal Diseases/complications , Intestines/microbiology , Intestines/parasitology , Intestines/virology , Male , Nutritional Status , Polymerase Chain Reaction , Rotavirus/growth & development , Shigella/growth & development , Tanzania
14.
BMC Med ; 14: 27, 2016 Feb 12.
Article in English | MEDLINE | ID: mdl-26867587

ABSTRACT

The intestinal microbiota is a large and diverse microbial community that inhabits the intestine, containing about 100 trillion bacteria of 500-1000 distinct species that, collectively, provide benefits to the host. The human gut microbiota composition is determined by a myriad of factors, among them genetic and environmental, including diet and medication. The microbiota contributes to nutrient absorption and maturation of the immune system. As reciprocity, the host immune system plays a central role in shaping the composition and localization of the intestinal microbiota. Secretory immunoglobulins A (sIgAs), component of the adaptive immune system, are important player in the protection of epithelium, and are known to have an important impact on the regulation of microbiota composition. A recent study published in Immunity by Fransen and colleagues aimed to mechanistically decipher the interrelationship between sIgA and microbiota diversity/composition. This commentary will discuss these important new findings, as well as how future therapies can ultimately benefit from such discovery.


Subject(s)
Gastrointestinal Microbiome/immunology , Immune System/physiology , Animals , Biodiversity , Humans , IgA Deficiency/immunology , IgA Deficiency/microbiology , Immunoglobulin A/physiology , Intestines/immunology , Intestines/microbiology , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL
15.
ASAIO J ; 70(5): 358-364, 2024 May 01.
Article in English | MEDLINE | ID: mdl-38166039

ABSTRACT

Patients who undergo implantation of a left ventricular assist device (LVAD) are at a high risk for right ventricular failure (RVF), presumably due to poor right ventricular (RV) function before surgery. Cine computerized tomography (cineCT) can be used to evaluate RV size, function, and endocardial strain. However, CT-based strain measures in patients undergoing workup for LVAD implantation have not been evaluated. We quantified RV strain in the free wall (FW) and septal wall (SW) in patients with end-stage heart failure using cineCT. Compared to controls, both FW and SW strains were significantly impaired in heart failure patients. The difference between FW and SW strains predicted RV failure after LVAD implantation (area-under-the curve [AUC] = 0.82). Cine CT strain can be combined with RV volumetry to risk-stratify patients. In our study, patients with preserved RV volumes and poor strain had a higher rate of RV failure (57%), than those with preserved volume and preserved strain (0%). This suggests that CT could improve risk stratification of patients receiving LVADs and that strain metrics were particularly useful in risk-stratifying patients with preserved RV volumes.


Subject(s)
Heart Failure , Heart Ventricles , Heart-Assist Devices , Tomography, X-Ray Computed , Ventricular Dysfunction, Right , Humans , Middle Aged , Male , Female , Heart-Assist Devices/adverse effects , Heart Ventricles/diagnostic imaging , Heart Ventricles/physiopathology , Tomography, X-Ray Computed/methods , Ventricular Dysfunction, Right/etiology , Ventricular Dysfunction, Right/diagnostic imaging , Ventricular Dysfunction, Right/physiopathology , Aged , Adult , Risk Assessment/methods
16.
Sci Rep ; 14(1): 2360, 2024 01 29.
Article in English | MEDLINE | ID: mdl-38287090

ABSTRACT

Among the most prevalent neurodevelopmental disorders, Autism Spectrum Disorder (ASD) is highly diverse showing a broad phenotypic spectrum. ASD also couples with a broad range of mutations, both de novo and inherited. In this study, we used a proprietary SNP genotyping chip to analyze the genomic DNA of 250 Vietnamese children diagnosed with ASD. Our Single Nucleotide Polymorphism (SNP) genotyping chip directly targets more than 800 thousand SNPs in the genome. Our primary focus was to identify pathogenic/likely pathogenic mutations that are potentially linked to more severe symptoms of autism. We identified and validated 23 pathogenic/likely pathogenic mutations in this initial study. The data shows that these mutations were detected in several cases spanning multiple biological pathways. Among the confirmed SNPs, mutations were identified in genes previously known to be strongly associated with ASD such as SLCO1B1, ACADSB, TCF4, HCP5, MOCOS, SRD5A2, MCCC2, DCC, and PRKN while several other mutations are known to associate with autistic traits or other neurodevelopmental disorders. Some mutations were found in multiple patients and some patients carried multiple pathogenic/likely pathogenic mutations. These findings contribute to the identification of potential targets for therapeutic solutions in what is considered a genetically heterogeneous neurodevelopmental disorder.


Subject(s)
Autism Spectrum Disorder , Child , Humans , Autism Spectrum Disorder/genetics , Polymorphism, Single Nucleotide , Genotype , Vietnam , Genetic Predisposition to Disease , Mutation , Liver-Specific Organic Anion Transporter 1/genetics , Sulfurtransferases/genetics , Membrane Proteins/genetics , 3-Oxo-5-alpha-Steroid 4-Dehydrogenase/genetics
17.
Macromol Biosci ; 23(11): e2300316, 2023 11.
Article in English | MEDLINE | ID: mdl-37713590

ABSTRACT

In extrusion-based 3D printing, the use of synthetic polymeric hydrogels can facilitate fabrication of cellularized and implanted scaffolds with sufficient mechanical properties to maintain the structural integrity and physical stress within the in vivo conditions. However, synthetic hydrogels face challenges due to their poor properties of cellular adhesion, bioactivity, and biofunctionality. New compositions of hydrogel inks have been designed to address this limitation. A viscous poly(maleate-propylene oxide)-lipoate-poly(ethylene oxide) (MPLE) hydrogel is recently developed that shows high-resolution printability, drug-controlled release, excellent mechanical properties with adhesiveness, and biocompatibility. In this study, the authors demonstrate that the incorporation of cell-adhesive proteins like gelatin and albumin within the MPLE gel allows printing of biologically functional 3D scaffolds with rapid cell spreading (within 7 days) and high cell proliferation (twofold increase) as compared with MPLE gel only. Addition of proteins (10% w/v) supports the formation of interconnected cell clusters (≈1.6-fold increase in cell areas after 7-day) and spreading of cells in the printed scaffolds without additional growth factors. In in vivo studies, the protein-loaded scaffolds showed excellent biocompatibility and increased angiogenesis without inflammatory response after 4-week implantation in mice, thus demonstrating the promise to contribute to the printable tough hydrogel inks for tissue engineering.


Subject(s)
Thioctic Acid , Tissue Scaffolds , Animals , Mice , Tissue Scaffolds/chemistry , Ink , Adhesives , Tissue Engineering , Maleates , Propylene Glycol , Hydrogels/pharmacology , Hydrogels/chemistry , Printing, Three-Dimensional
18.
ASAIO J ; 69(1): 69-75, 2023 01 01.
Article in English | MEDLINE | ID: mdl-36583772

ABSTRACT

Identification of patients who are at a high risk for right ventricular failure (RVF) after left ventricular assist device (LVAD) implantation is of critical importance. Conventional tools for predicting RVF, including two-dimensional echocardiography, right heart catheterization (RHC), and clinical parameters, generally have limited sensitivity and specificity. We retrospectively examined the ability of computed tomography (CT) ventricular volume measures to identify patients who experienced RVF after LVAD implantation. Between September 2017 and November 2021, 92 patients underwent LVAD surgery at our institution. Preoperative CT-derived ventricular volumes were obtained in 20 patients. Patients who underwent CT evaluation had a similar demographics and rate of RVF after LVAD as patients who did not undergo cardiac CT imaging. In the study cohort, seven of 20 (35%) patients experienced RVF (2 unplanned biventricular assist device, 5 prolonged inotropic support). Computed tomography-derived right ventricular end-diastolic and end-systolic volume indices were the strongest predictors of RVF compared with demographic, echocardiographic, and RHC data with areas under the receiver operating curve of 0.79 and 0.76, respectively. Computed tomography volumetric assessment of RV size can be performed in patients evaluated for LVAD treatment. RV measures of size provide a promising means of pre-LVAD assessment for postoperative RV failure.


Subject(s)
Heart Failure , Heart-Assist Devices , Ventricular Dysfunction, Right , Humans , Retrospective Studies , Heart-Assist Devices/adverse effects , Heart Ventricles/diagnostic imaging , Tomography, X-Ray Computed , Ventricular Dysfunction, Right/diagnostic imaging , Ventricular Dysfunction, Right/etiology
19.
ASAIO J ; 69(2): e66-e72, 2023 02 01.
Article in English | MEDLINE | ID: mdl-36521051

ABSTRACT

Right ventricular (RV) function is an important marker of mortality in chronic left-sided heart failure. Right ventricular function is particularly important for patients receiving left ventricular assist devices as it is a predictor of postoperative RV failure. RV stroke work index (RVSWI), the area enclosed by a pressure-volume (PV) loop, is prognostic of RV failure. However, clinical RVSWI approximates RVSWI as the product of thermodilution-derived stroke volume and the pulmonary pressure gradient. This ignores the energetic contribution of regurgitant flow and does not allow for advanced energetic measures, such as pressure-volume area and efficiency. Estimating RVSWI from forward flow may underestimate the underlying RV function. We created single-beat PV loops by combining data from cine computed tomography (CT) and right heart catheterization in 44 heart failure patients, tested the approximations made by clinical RVSWI and found it to underestimate PV loop RVSWI, primarily due to regurgitant flow in tricuspid regurgitation. The ability of RVSWI to predict post-operative RV failure improved when the single-beat approach was used. Further, RV pressure-volume area and efficiency measures were obtained and show broad agreement with other functional measures. Future work is needed to investigate the utility of these PV metrics in a clinical setting.


Subject(s)
Heart Failure , Ventricular Dysfunction, Right , Humans , Heart Ventricles/diagnostic imaging , Heart Failure/diagnostic imaging , Heart Failure/surgery , Cardiac Catheterization/methods , Prognosis , Tomography , Stroke Volume
20.
Biosens Bioelectron ; 218: 114750, 2022 Dec 15.
Article in English | MEDLINE | ID: mdl-36244136

ABSTRACT

Brain organoids are powerful experimental models to study fundamental neurodevelopmental processes and the pathology of neurological disorders. Brain organoids can now be generated from human-induced pluripotent stem cells, which pave the way for using them to investigate effective therapies for various neurodegenerative disorders and diseases. However, brain organoids possess complex cellular architecture, various unknown functionalities, and a lack of vascular networks, which have limited their use in biomedicine and clinical research. Micro/nanoscale devices and technologies can help overcome these limitations. This review critically examines recently developed micro/nano devices for integration with brain organoids. The review focuses on devices designed to achieve several key aims: to improve methodologies for in vitro culture; to enable electrophysiological recordings from organoids; to screen drugs for chemotherapy and new treatments; to understand the effects of psychoactive drugs; and to enable development of vascular networks in organoids. Along with the specific device features and their relevance for these applications, we also discuss the current challenges to overcome and future strategies to advance the use of brain organoids in clinical research. The interdisciplinary convergence of brain organoids research with materials science, device engineering, neuroscience, and stem cell biology holds remarkable potential for replicating the human brain in vitro. Micro/nano devices are an important part of realizing this potential that will afford both fundamental insights into the mechanisms underlying brain function and a pathway for developing novel treatments for neurophysiological and neurodegenerative disorders.


Subject(s)
Biosensing Techniques , Induced Pluripotent Stem Cells , Neurodegenerative Diseases , Humans , Organoids/metabolism , Brain/physiology
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