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1.

The Whole (Cell) Is Less Than the Sum of Its Parts.

Van Vranken, Jonathan G; Rutter, Jared.

Cell ; 166(5): 1078-1079, 2016 Aug 25.

Article in English | MEDLINE | ID: mdl-27565337

2.

You Down With ETC? Yeah, You Know D!

Van Vranken, Jonathan G; Rutter, Jared.

Cell ; 162(3): 471-3, 2015 Jul 30.

Article in English | MEDLINE | ID: mdl-26232217

3.

ACP Acylation Is an Acetyl-CoA-Dependent Modification Required for Electron Transport Chain Assembly.

Van Vranken, Jonathan G; Nowinski, Sara M; Clowers, Katie J; Jeong, Mi-Young; Ouyang, Yeyun; Berg, Jordan A; Gygi, Jeremy P; Gygi, Steven P; Winge, Dennis R; Rutter, Jared.

Mol Cell ; 71(4): 567-580.e4, 2018 08 16.

Article in English | MEDLINE | ID: mdl-30118679

4.

Amelioration of pathologic α-synuclein-induced Parkinson's disease by irisin.

Kam, Tae-In; Park, Hyejin; Chou, Shih-Ching; Van Vranken, Jonathan G; Mittenbühler, Melanie J; Kim, Hyeonwoo; A, Mu; Choi, Yu Ree; Biswas, Devanik; Wang, Justin; Shin, Yu; Loder, Alexis; Karuppagounder, Senthilkumar S; Wrann, Christiane D; Dawson, Valina L; Spiegelman, Bruce M; Dawson, Ted M.

Proc Natl Acad Sci U S A ; 119(36): e2204835119, 2022 09 06.

Article in English | MEDLINE | ID: mdl-36044549

5.

TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples.

Li, Jiaming; Van Vranken, Jonathan G; Pontano Vaites, Laura; Schweppe, Devin K; Huttlin, Edward L; Etienne, Chris; Nandhikonda, Premchendar; Viner, Rosa; Robitaille, Aaron M; Thompson, Andrew H; Kuhn, Karsten; Pike, Ian; Bomgarden, Ryan D; Rogers, John C; Gygi, Steven P; Paulo, Joao A.

Nat Methods ; 17(4): 399-404, 2020 04.

Article in English | MEDLINE | ID: mdl-32203386

6.

A role for the mitochondrial pyruvate carrier as a repressor of the Warburg effect and colon cancer cell growth.

Schell, John C; Olson, Kristofor A; Jiang, Lei; Hawkins, Amy J; Van Vranken, Jonathan G; Xie, Jianxin; Egnatchik, Robert A; Earl, Espen G; DeBerardinis, Ralph J; Rutter, Jared.

Mol Cell ; 56(3): 400-413, 2014 Nov 06.

Article in English | MEDLINE | ID: mdl-25458841

7.

Iron Deficiency and Recovery in Yeast: A Quantitative Proteomics Approach.

Navarrete-Perea, Jose; Guerra-Moreno, Angel; Van Vranken, Jonathan; Isasa, Marta; Paulo, Joao A; Gygi, Steven P.

J Proteome Res ; 20(5): 2751-2761, 2021 05 07.

Article in English | MEDLINE | ID: mdl-33797912

8.

Selection of Heating Temperatures Improves the Sensitivity of the Proteome Integral Solubility Alteration Assay.

Li, Jiaming; Van Vranken, Jonathan G; Paulo, Joao A; Huttlin, Edward L; Gygi, Steven P.

J Proteome Res ; 19(5): 2159-2166, 2020 05 01.

Article in English | MEDLINE | ID: mdl-32243163

9.

Structure of human Fe-S assembly subcomplex reveals unexpected cysteine desulfurase architecture and acyl-ACP-ISD11 interactions.

Cory, Seth A; Van Vranken, Jonathan G; Brignole, Edward J; Patra, Shachin; Winge, Dennis R; Drennan, Catherine L; Rutter, Jared; Barondeau, David P.

Proc Natl Acad Sci U S A ; 114(27): E5325-E5334, 2017 07 03.

Article in English | MEDLINE | ID: mdl-28634302

10.

Protein-mediated assembly of succinate dehydrogenase and its cofactors.

Van Vranken, Jonathan G; Na, Un; Winge, Dennis R; Rutter, Jared.

Crit Rev Biochem Mol Biol ; 50(2): 168-80, 2015.

Article in English | MEDLINE | ID: mdl-25488574

11.

Large-scale characterization of drug mechanism of action using proteome-wide thermal shift assays.

Van Vranken, Jonathan G; Li, Jiaming; Mintseris, Julian; Gadzuk-Shea, Meagan; Gygi, Steven P; Schweppe, Devin K.

bioRxiv ; 2024 Feb 10.

Article in English | MEDLINE | ID: mdl-38328090

12.

Ergothioneine boosts mitochondrial respiration and exercise performance via direct activation of MPST.

Sprenger, Hans-Georg; Mittenbühler, Melanie J; Sun, Yizhi; Van Vranken, Jonathan G; Schindler, Sebastian; Jayaraj, Abhilash; Khetarpal, Sumeet A; Vargas-Castillo, Ariana; Puszynska, Anna M; Spinelli, Jessica B; Armani, Andrea; Kunchok, Tenzin; Ryback, Birgitta; Seo, Hyuk-Soo; Song, Kijun; Sebastian, Luke; O'Young, Coby; Braithwaite, Chelsea; Dhe-Paganon, Sirano; Burger, Nils; Mills, Evanna L; Gygi, Steven P; Arthanari, Haribabu; Chouchani, Edward T; Sabatini, David M; Spiegelman, Bruce M.

bioRxiv ; 2024 Apr 10.

Article in English | MEDLINE | ID: mdl-38645260

13.

Mustn1 is a smooth muscle cell-secreted microprotein that modulates skeletal muscle extracellular matrix composition.

Ducommun, Serge; Jannig, Paulo R; Cervenka, Igor; Murgia, Marta; Mittenbühler, Melanie J; Chernogubova, Ekaterina; Dias, José M; Jude, Baptiste; Correia, Jorge C; Van Vranken, Jonathan G; Ocana-Santero, Gabriel; Porsmyr-Palmertz, Margareta; McCann Haworth, Sarah; Martínez-Redondo, Vicente; Liu, Zhengye; Carlström, Mattias; Mann, Matthias; Lanner, Johanna T; Teixeira, Ana I; Maegdefessel, Lars; Spiegelman, Bruce M; Ruas, Jorge L.

Mol Metab ; 82: 101912, 2024 Apr.

Article in English | MEDLINE | ID: mdl-38458566

14.

Phosphate starvation signaling increases mitochondrial membrane potential through respiration-independent mechanisms.

Ouyang, Yeyun; Jeong, Mi-Young; Cunningham, Corey N; Berg, Jordan A; Toshniwal, Ashish G; Hughes, Casey E; Seiler, Kristina; Van Vranken, Jonathan G; Cluntun, Ahmad A; Lam, Geanette; Winter, Jacob M; Akdogan, Emel; Dove, Katja K; Nowinski, Sara M; West, Matthew; Odorizzi, Greg; Gygi, Steven P; Dunn, Cory D; Winge, Dennis R; Rutter, Jared.

Elife ; 132024 Jan 22.

Article in English | MEDLINE | ID: mdl-38251707

15.

RBM43 links adipose inflammation and energy expenditure through translational regulation of PGC1α.

Dumesic, Phillip A; Wilensky, Sarah E; Bose, Symanthika; Van Vranken, Jonathan G; Gygi, Steven P; Spiegelman, Bruce M.

bioRxiv ; 2023 Jan 07.

Article in English | MEDLINE | ID: mdl-36712038

16.

A proteome-wide atlas of drug mechanism of action.

Mitchell, Dylan C; Kuljanin, Miljan; Li, Jiaming; Van Vranken, Jonathan G; Bulloch, Nathan; Schweppe, Devin K; Huttlin, Edward L; Gygi, Steven P.

Nat Biotechnol ; 41(6): 845-857, 2023 06.

Article in English | MEDLINE | ID: mdl-36593396

17.

Insulin sensitization by small molecules enhancing GLUT4 translocation.

Yin, Terry C; Van Vranken, Jonathan G; Srivastava, Dhiraj; Mittal, Ayushi; Buscaglia, Paul; Moore, Autumn E; Verdinez, Jissele A; Graham, Aschleigh E; Walsh, Susan A; Acevedo, Michael A; Kerns, Robert J; Artemyev, Nikolai O; Gygi, Steven P; Sebag, Julien A.

Cell Chem Biol ; 30(8): 933-942.e6, 2023 08 17.

Article in English | MEDLINE | ID: mdl-37453421

18.

Isolation of extracellular fluids reveals novel secreted bioactive proteins from muscle and fat tissues.

Mittenbühler, Melanie J; Jedrychowski, Mark P; Van Vranken, Jonathan G; Sprenger, Hans-Georg; Wilensky, Sarah; Dumesic, Phillip A; Sun, Yizhi; Tartaglia, Andrea; Bogoslavski, Dina; A, Mu; Xiao, Haopeng; Blackmore, Katherine A; Reddy, Anita; Gygi, Steven P; Chouchani, Edward T; Spiegelman, Bruce M.

Cell Metab ; 35(3): 535-549.e7, 2023 03 07.

Article in English | MEDLINE | ID: mdl-36681077

19.

Assessing target engagement using proteome-wide solvent shift assays.

Van Vranken, Jonathan G; Li, Jiaming; Mitchell, Dylan C; Navarrete-Perea, José; Gygi, Steven P.

Elife ; 102021 12 08.

Article in English | MEDLINE | ID: mdl-34878405

20.

Impact of Mitochondrial Fatty Acid Synthesis on Mitochondrial Biogenesis.

Nowinski, Sara M; Van Vranken, Jonathan G; Dove, Katja K; Rutter, Jared.

Curr Biol ; 28(20): R1212-R1219, 2018 10 22.

Article in English | MEDLINE | ID: mdl-30352195

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