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1.
Planta Med ; 86(15): 1089-1096, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32365392

ABSTRACT

Mint flavorings are widely used in confections, beverages, and dairy products. For the first time, mint flavoring composition of mint candies and food supplements (n = 45), originating from 16 countries, as well as their antibacterial properties, was analyzed. The flavorings were isolated by Marcusson's type micro-apparatus and analyzed by GC-MS. The total content of the mint flavoring hydrodistilled extracts was in the range of 0.01 - 0.9%. The most abundant compounds identified in the extracts were limonene, 1,8-cineole, menthone, menthofuran, isomenthone, menthol and its isomers, menthyl acetate. The antimicrobial activity of 13 reference substances and 10 selected mint flavoring hydrodistilled extracts was tested on Escherichia coli and Staphylococcus aureus by broth dilution method. Linalool acetate and (-)-carvone, as most active against both bacteria, had the lowest MIC90 values. (+)-Menthyl acetate, (-)-menthyl acetate, and limonene showed no antimicrobial activity. Three of the tested extracts had antimicrobial activity against E. coli and 8 extracts against S. aureus. Their summary antimicrobial activity was not always in concordance with the activities of respective reference substances.


Subject(s)
Mentha , Anti-Bacterial Agents/pharmacology , Candy , Dietary Supplements , Escherichia coli , Microbial Sensitivity Tests , Plant Extracts , Staphylococcus aureus
2.
Anal Chem ; 89(4): 2398-2404, 2017 02 21.
Article in English | MEDLINE | ID: mdl-28219250

ABSTRACT

A nanoparticle-based assay utilizing time-resolved luminescence resonance energy transfer (TR-LRET) was developed for the detection of ß-amyloid aggregation. The assay is based on the competitive adsorption of the sample and the acceptor-labeled protein to donor europium(III) polystyrene nanoparticles. The performance of the assay was demonstrated by following the fibrillization of ß-amyloid peptide 1-42 (Aß42) as a function of time and by comparing to the reference methods atomic force microscopy (AFM) and thioflavin T (ThT) assay. The fibrillization leads to reduced adsorption of Aß42 to the nanoparticles increasing the TR-LRET signal. The investigated methods detected fibril formation with equal sensitivities. Eight potential fibrillization inhibitor compounds reported in the literature were tested and the results obtained with each method were compared. It was shown with AFM imaging that the inhibition of fibril formation was not complete with any of the compounds. The developed TR-LRET nanoparticle assay gave corresponding results with the AFM imaging. However, the ThT assay led to contradictory results, as low fluorescence signal was measured in the presence of all tested compounds suggesting inhibition of fibrillization. Our results suggest that the developed TR-LRET nanoparticle assay can be exploited for screening of potential ß-amyloid aggregation inhibitors, whereas some of the tested compounds may be measured as false positive inhibitors with the much-utilized ThT assay.


Subject(s)
Amyloid beta-Peptides/analysis , Fluorescence Resonance Energy Transfer/methods , Nanoparticles/chemistry , Peptide Fragments/analysis , Amyloid beta-Peptides/antagonists & inhibitors , Amyloid beta-Peptides/metabolism , Benzophenanthridines/chemistry , Benzophenanthridines/metabolism , Europium/chemistry , Fluorescent Dyes/chemistry , Microscopy, Atomic Force , Nanoparticles/metabolism , Peptide Fragments/antagonists & inhibitors , Peptide Fragments/metabolism , Polystyrenes/chemistry , Protein Aggregates , Rifampin/chemistry , Rifampin/metabolism
3.
J Nat Prod ; 80(10): 2602-2608, 2017 10 27.
Article in English | MEDLINE | ID: mdl-29043803

ABSTRACT

The obligate intracellular pathogen Chlamydia pneumoniae remains a difficult target for antimicrobial therapy. Owing to the permeability barrier placed by bacterial and host vacuolar membranes, as well as the propensity of the bacterium for persistent infections, treatment failures are common. Despite the urgent need for new antichlamydial compounds, their discovery is challenged by the technically demanding assay procedures and lack of validated targets. An alternative strategy of using naturally occurring compounds and their derivatives against C. pneumoniae is presented. The strategy consists of the application of ligand-based virtual screening to a natural product library of 502 compounds with the ChemGPS-NP chemography tool followed by in vitro antichlamydial assays. The reference set used for the 2D similarity search was constructed of 19 known antichlamydial compounds of plant origin. Based on the similarity screen, 53 virtual hits were selected for in vitro testing. Six compounds (leads) were identified that cause ≥50% C. pneumoniae growth inhibition and showed no impact on host cell viability. The leads fall into completely new antichlamydial chemotypes, one of them being mycophenolic acid (IC50 value 0.3 µM). The outcome indicates that using this flipped, target-independent strategy is useful for facilitating the antimicrobial lead discovery against challenging microbes.


Subject(s)
Anti-Bacterial Agents/pharmacology , Biological Products/pharmacology , Chlamydophila pneumoniae/drug effects , Anti-Bacterial Agents/chemistry , Azithromycin/pharmacology , Biological Products/chemistry , Cell Line , Cell Survival/drug effects , Drug Discovery , Humans , Ligands , Microbial Sensitivity Tests , Molecular Structure
4.
Int J Med Microbiol ; 306(1): 69-74, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26725755

ABSTRACT

The present study reports the effect of Penicillin G (PenG) on the proteome dynamics of the Staphylococcus aureus strain Newman during biofilm mode of growth. The viability of the 18-h-old biofilm cells challenged with PenG at the concentration of 1mgmL(-1) was first assessed by plate counting, resazurin and LIVE/DEAD fluorescence staining, which indicated that the viability was reduced by ∼35% and ∼90% at 2h and 24h, respectively, after the addition of PenG. Subsequent two-dimensional difference gel electrophoresis (2D DIGE) assay of the treated and non-treated biofilm cells at the indicated time points revealed 45 proteins showing time- and treatment-specific change (1.5-fold, p<0.01). The 2D DIGE results suggested that the PenG-induced decrease in viability was accompanied by an increased synthesis of pyruvate oxidase (CidC), a suicidal marker known to potentiate acetate-dependent cell death in S. aureus. Increased abundance was also found for the TCA cycle associated malate-quinone oxidoreductase (Mqo), the ClpC ATPase, the HlgBC toxin and phage-associated proteins, which suggests that surviving cells have induced these activities as a last effort to overcome lethal doses of PenG. Proteomic results also revealed that the surviving cells were likely to strengthen their peptidoglycan due to the increased abundance of cell-wall biogenesis associated proteins, FemA and Pbp2; a phenomenon associated with dormancy in S. aureus.


Subject(s)
Anti-Bacterial Agents/metabolism , Bacterial Proteins/biosynthesis , Biofilms/drug effects , Penicillin G/metabolism , Staphylococcus aureus/drug effects , Virulence Factors/biosynthesis , Electrophoresis, Gel, Two-Dimensional , Microbial Viability/drug effects , Proteome/analysis , Staphylococcus aureus/physiology
5.
Chem Biodivers ; 13(6): 700-9, 2016 Jun.
Article in English | MEDLINE | ID: mdl-27133212

ABSTRACT

The coumarin composition of Peucedanum palustre (L.) Moench populations growing in Finland was investigated. A total of 132 flowering P. palustre specimens from 43 locations in southern and central Finland were collected, divided into root, stem, leaf, and umbel samples, and analyzed by HPLC. HPLC coupled to high-resolution mass spectrometry was used to aid the identification of coumarins. A total of 13 coumarin-structured compounds were quantitatively analyzed from the samples. The coumarin profile of root samples was found to differ from the aerial plant parts. The main coumarins in roots were oxypeucedanin and columbianadin. In aerial parts, peulustrin isomers were the most abundant coumarin components. Umbels and leaves also contained a considerable amount of umbelliprenin, which was only found in traces in roots. Based on hierarchical cluster analysis of the coumarin profiles, some populations shared common characteristics. The most distinct property connecting certain populations was their high peulustrin content. Another notable common property between some populations was the high umbelliprenin content in aerial plant parts. Some populations were clustered together due to their low overall coumarin content.


Subject(s)
Apiaceae/chemistry , Coumarins/analysis , Apiaceae/growth & development , Chromatography, High Pressure Liquid , Finland , Mass Spectrometry , Molecular Structure
6.
Molecules ; 21(9)2016 Sep 10.
Article in English | MEDLINE | ID: mdl-27626397

ABSTRACT

Quorum sensing (QS) is the process by which bacteria produce and detect signal molecules to coordinate their collective behavior. This intercellular communication is a relevant target for anti-biofilm therapies. Here we have optimized a screening-applicable assay to search for new quorum sensing inhibitors from natural compound libraries. In this system, QS is correlated with the production of violacein, which is directly controlled by the LuxI/LuxR system in Chromobacterium violaceum ATCC 31532. The parallel use of C. violaceum Tn5-mutant CV026, which depends on auto-inducer addition, allows simultaneous discrimination of compounds that act as quenchers of the AHL signal (quorum quenchers). The incorporation of a redox stain into the platform allowed further distinction between QS inhibitors, quorum quenchers and antibacterial compounds. A pilot screening was performed with 465 natural and synthetic flavonoids. All the most active compounds were flavones and they displayed potencies (IC50) in the range of 3.69 to 23.35 µM. These leads were particularly promising as they inhibited the transition from microcolonies into mature biofilms from Escherichia coli and Pseudomonas aeruginosa strains. This approach can be very effective in identifying new antimicrobials posing lesser risks of resistance.


Subject(s)
Biofilms , Chromobacterium/metabolism , Escherichia coli/physiology , Flavones , Pseudomonas aeruginosa/physiology , Quorum Sensing/drug effects , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biofilms/drug effects , Biofilms/growth & development , Chromobacterium/genetics , Flavones/chemistry , Flavones/pharmacology , Indoles/metabolism , Repressor Proteins/genetics , Repressor Proteins/metabolism , Trans-Activators/genetics , Trans-Activators/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism
7.
Pharm Biol ; 54(6): 1108-15, 2016.
Article in English | MEDLINE | ID: mdl-26808592

ABSTRACT

CONTEXT: Identification of bioactive components from complex natural product extracts can be a tedious process that aggravates the use of natural products in drug discovery campaigns. OBJECTIVE: This study presents a new approach for screening antimicrobial potential of natural product extracts by employing a bioreporter assay amenable to HPLC-based activity profiling. MATERIALS AND METHODS: A library of 116 crude extracts was prepared from fungal culture filtrates by liquid-liquid extraction with ethyl acetate, lyophilised, and screened against Escherichia coli using TLC bioautography. Active extracts were studied further with a broth microdilution assay, which was, however, too insensitive for identifying the active microfractions after HPLC separation. Therefore, an assay based on bioluminescent E. coli K-12 (pTetLux1) strain was coupled with HPLC micro-fractionation. RESULTS: Preliminary screening yielded six fungal extracts with potential antimicrobial activity. A crude extract from a culture filtrate of the wood-rotting fungus, Pycnoporus cinnabarinus (Jacq.) P. Karst. (Polyporaceae), was selected for evaluating the functionality of the bioreporter assay in HPLC-based activity profiling. In the bioreporter assay, the IC50 value for the crude extract was 0.10 mg/mL. By integrating the bioreporter assay with HPLC micro-fractionation, the antimicrobial activity was linked to LC-UV peak of a compound in the chromatogram of the extract. This compound was isolated and identified as a fungal pigment phlebiarubrone. DISCUSSION AND CONCLUSION: HPLC-based activity profiling using the bioreporter-based approach is a valuable tool for identifying antimicrobial compound(s) from complex crude extracts, and offers improved sensitivity and speed compared with traditional antimicrobial assays, such as the turbidimetric measurement.


Subject(s)
Anti-Infective Agents/pharmacology , Chemical Fractionation/methods , Chromatography, High Pressure Liquid/methods , Complex Mixtures/pharmacology , Pycnoporus , Anti-Infective Agents/isolation & purification , Chromatography, Thin Layer , Complex Mixtures/isolation & purification , Escherichia coli K12/drug effects , Escherichia coli K12/growth & development , Liquid Phase Microextraction , Microbial Sensitivity Tests , Pycnoporus/chemistry , Pycnoporus/growth & development
8.
Biochemistry ; 54(49): 7212-21, 2015 Dec 15.
Article in English | MEDLINE | ID: mdl-26568031

ABSTRACT

Ras isoforms H-, N-, and K-ras are each mutated in specific cancer types at varying frequencies and have different activities in cell fate control. On the plasma membrane, Ras proteins are laterally segregated into isoform-specific nanoscale signaling hubs, termed nanoclusters. As Ras nanoclusters are required for Ras signaling, chemical modulators of nanoclusters represent ideal candidates for the specific modulation of Ras activity in cancer drug development. We therefore conducted a chemical screen with commercial and in-house natural product libraries using a cell-based H-ras-nanoclustering FRET assay. Next to established Ras inhibitors, such as a statin and farnesyl-transferase inhibitor, we surprisingly identified five protein synthesis inhibitors as positive regulators. Using commonly employed cycloheximide as a representative compound, we show that protein synthesis inhibition increased nanoclustering and effector recruitment specifically of active H-ras but not of K-ras. Consistent with these data, cycloheximide treatment activated both Erk and Akt kinases and specifically promoted H-rasG12V-induced, but not K-rasG12V-induced, PC12 cell differentiation. Intriguingly, cycloheximide increased the number of mammospheres, which are enriched for cancer stem cells. Depletion of H-ras in combination with cycloheximide significantly reduced mammosphere formation, suggesting an exquisite synthetic lethality. The potential of cycloheximide to promote tumor cell growth was also reflected in its ability to increase breast cancer cell tumors grown in ovo. These results illustrate the possibility of identifying Ras-isoform-specific modulators using nanocluster-directed screening. They also suggest an unexpected feedback from protein synthesis inhibition to Ras signaling, which might present a vulnerability in certain tumor cell types.


Subject(s)
Cell Transformation, Neoplastic/chemically induced , Neoplasms/chemically induced , Oncogene Proteins/metabolism , Protein Synthesis Inhibitors/adverse effects , Proto-Oncogene Proteins p21(ras)/metabolism , ras Proteins/metabolism , Amino Acid Substitution , Animals , Cell Membrane/genetics , Cell Membrane/metabolism , Cell Membrane/pathology , Cell Transformation, Neoplastic/genetics , Cell Transformation, Neoplastic/metabolism , Cricetinae , Extracellular Signal-Regulated MAP Kinases/genetics , Extracellular Signal-Regulated MAP Kinases/metabolism , HEK293 Cells , Humans , MAP Kinase Signaling System/drug effects , MAP Kinase Signaling System/genetics , Mice , Mice, Knockout , Mutation, Missense , Neoplasms/genetics , Neoplasms/metabolism , Neoplasms/pathology , Oncogene Proteins/genetics , PC12 Cells , Protein Synthesis Inhibitors/pharmacology , Proto-Oncogene Proteins p21(ras)/genetics , Rats , ras Proteins/genetics
9.
Antimicrob Agents Chemother ; 59(10): 6046-52, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26195520

ABSTRACT

Streptomyces bacteria are renowned for their ability to produce bioactive secondary metabolites. Recently, synthetic biology has enabled the production of intermediates and shunt products, which may have altered biological activities compared to the end products of the pathways. Here, we have evaluated the potential of recently isolated alnumycins and other closely related pyranonaphthoquinone (PNQ) polyketides against Staphylococcus aureus biofilms. The antimicrobial potency of the compounds against planktonic cells and biofilms was determined by redox dye-based viability staining, and the antibiofilm efficacy of the compounds was confirmed by viable counting. A novel antistaphylococcal polyketide, alnumycin D, was identified. Unexpectedly, the C-ribosylated pathway shunt product alnumycin D was more active against planktonic and biofilm cells than the pathway end product alnumycin A, where a ribose unit has been converted into a dioxane moiety. The evaluation of the antibiofilm potential of other alnumycins revealed that the presence of the ribose moiety in pyranose form is essential for high activity against preformed biofilms. Furthermore, the antibiofilm potential of other closely related PNQ polyketides was examined. Based on their previously reported activity against planktonic S. aureus cells, granaticin B, kalafungin, and medermycin were also selected for testing, and among them, granaticin B was found to be the most potent against preformed biofilms. The most active antibiofilm PNQs, alnumycin D and granaticin B, share several structural features that may be important for their antibiofilm activity. They are uncharged, glycosylated, and also contain a similar oxygenation pattern of the lateral naphthoquinone ring. These findings highlight the potential of antibiotic biosynthetic pathways as a source of effective antibiofilm compounds.


Subject(s)
Anti-Bacterial Agents/pharmacology , Biofilms/drug effects , Polyketides/pharmacology , Staphylococcus aureus/drug effects , Streptomyces/chemistry , Streptomyces/metabolism , Anti-Bacterial Agents/metabolism , Biosynthetic Pathways , Microbial Sensitivity Tests , Polyketides/metabolism
10.
Int J Mol Sci ; 16(11): 27044-57, 2015 Nov 12.
Article in English | MEDLINE | ID: mdl-26569236

ABSTRACT

Natural products are complex matrices of compounds that are prone to interfere with the label-dependent methods that are typically used for cytotoxicity screenings. Here, we developed a label-free Electric Cell-substrate Impedance Sensing (ECIS)-based cytotoxicity assay that can be applied in the assessment of the cytotoxicity of natural extracts. The conditions to measure the impedance using ECIS were first optimized in mice immortalized hypothalamic neurons GT1-7 cells. The performance of four natural extracts when tested using three conventional cytotoxicity assays in GT1-7 cells, was studied. Betula pendula (silver birch tree) was found to interfere with all of the cytotoxicity assays in which labels were applied. The silver birch extract was also proven to be cytotoxic and, thus, served as a proof-of-concept for the use of ECIS. The extract was fractionated and the ECIS method permitted the distinction of specific kinetic patterns of cytotoxicity on the fractions as well as the extract's pure constituents. This study offers evidence that ECIS is an excellent tool for real-time monitoring of the cytotoxicity of complex extracts that are difficult to work with using conventional (label-based) assays. Altogether, it offers a very suitable cytotoxicity-screening assay making the work with natural products less challenging within the drug discovery workflow.


Subject(s)
Biological Products/pharmacology , Biosensing Techniques , Electric Impedance , Animals , Biological Products/chemistry , Biological Products/toxicity , Cell Line , Cell Survival/drug effects , Drug Evaluation, Preclinical , Mice , Neurons/drug effects , Neurons/metabolism , Reproducibility of Results , Signal-To-Noise Ratio
11.
Planta Med ; 80(14): 1182-99, 2014 Sep.
Article in English | MEDLINE | ID: mdl-25221978

ABSTRACT

Natural product sources have been a valuable provider of molecular diversity in many drug discovery programs and several therapeutically important drugs have been isolated from these. However, the screening of such materials can be very complicated due to the fact that they contain a complex mixture of secondary metabolites, but also the purified natural compounds exert a challenge for bioactivity screening. Success in identifying new therapeutics using in vitro bioassays is largely dependent upon the proper design, validation, and implementation of the screening assay. In this review, we discuss some aspects which are of significant concern when screening natural products in a microtiter plate-based format, being partly applicable to other assay formats as well, such as validation parameters, layouts for assay protocols, and common interferences caused by natural products samples, as well as various troubleshooting strategies. Examples from the field of natural product drug discovery of antibacterial compounds are discussed, and contributions from the realm of academic screenings are highlighted.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacteria/drug effects , Biological Assay/methods , Biological Products/pharmacology , Drug Discovery/methods , Animals , Anti-Bacterial Agents/isolation & purification , Biological Products/chemistry , Humans , Plant Extracts/chemistry , Plant Extracts/pharmacology , Small Molecule Libraries
12.
Biofouling ; 30(1): 81-93, 2014 Jan.
Article in English | MEDLINE | ID: mdl-24256295

ABSTRACT

Small antimicrobial ß(2,2)-amino acid derivatives (Mw < 500 Da) are reported to display high antibacterial activity against suspended Gram-positive strains combined with low hemolytic activity. In the present study, the anti-biofilm activity of six ß(2,2)-amino acid derivatives (A1-A6) against Staphylococcus aureus (ATCC 25923) was investigated. The derivatives displayed IC50 values between 5.4 and 42.8 µM for inhibition of biofilm formation, and concentrations between 22.4 and 38.4 µM had substantial effects on preformed biofilms. The lead derivative A2 showed high killing capacity (log R), and it caused distinct ultrastructural changes in the biofilms as shown by electron and atomic force microscopy. The anti-biofilm properties of A2 was preserved under high salinity conditions. Extended screening showed also high activity of A2 against Escherichia coli (XL1 Blue) biofilms. These advantageous features together with high activity against preformed biofilms make ß(2,2)-amino acid derivatives a promising class of compounds for further development of anti-biofilm agents.


Subject(s)
Amino Acids/pharmacology , Anti-Bacterial Agents/pharmacology , Biofilms/drug effects , Biofouling , Staphylococcus aureus/drug effects , Anti-Bacterial Agents/chemistry , Biofilms/growth & development , Microbial Sensitivity Tests , Staphylococcus aureus/physiology
13.
Int J Mol Sci ; 14(10): 19434-51, 2013 Sep 25.
Article in English | MEDLINE | ID: mdl-24071942

ABSTRACT

When single-cell (or suspended) bacteria switch into the biofilm lifestyle, they become less susceptible to antimicrobials, imposing the need for anti-biofilms research. Flavonoids are among the most extensively studied natural compounds with an unprecedented amount of bioactivity claims. Most studies focus on the antibacterial effects against suspended cells; fewer reports have researched their anti-biofilm properties. Here, a high throughput phenotypic platform was utilized to screen for the inhibitory activity of 500 flavonoids, including natural and synthetic derivatives, against Staphylococcus aureus biofilms. Since discrepancies among results from earlier antibacterial studies on flavonoids had been noted, the current study aimed to minimize sources of variations. After the first screen, flavonoids were classified as inactive (443), moderately active (47) or highly active (10). Further, exclusion criteria combining bioactivity and selectivity identified two synthetic flavans as the most promising. The body of data reported here serves three main purposes. First, it offers an improved methodological workflow for anti-biofilm screens of chemical libraries taking into account the (many times ignored) connections between anti-biofilm and antibacterial properties. This is particularly relevant for the study of flavonoids and other natural products. Second, it provides a large and freely available anti-biofilm bioactivity dataset that expands the knowledge on flavonoids and paves the way for future structure-activity relationship studies and structural optimizations. Finally, it identifies two new flavans that can successfully act on biofilms, as well as on suspended bacteria and represent more feasible antibacterial candidates.


Subject(s)
Anti-Bacterial Agents/pharmacology , Biofilms/drug effects , Flavonoids/pharmacology , Staphylococcus aureus/drug effects , Anti-Bacterial Agents/chemistry , Flavonoids/chemistry
14.
Int J Mol Sci ; 14(6): 12054-72, 2013 Jun 05.
Article in English | MEDLINE | ID: mdl-23739682

ABSTRACT

Potent drugs are desperately needed to counteract bacterial biofilm infections, especially those caused by gram-positive organisms, such as Staphylococcus aureus. Moreover, anti-biofilm compounds/agents that can be used as chemical tools are also needed for basic in vitro or in vivo studies aimed at exploring biofilms behavior and functionability. In this contribution, a collection of naturally-occurring abietane-type diterpenes and their derivatives was tested against S. aureus biofilms using a platform consisting of two phenotypic assays that have been previously published by our group. Three active compounds were identified: nordehydroabietylamine (1), (+)-dehydroabietic acid (2) and (+)-dehydroabietylamine (3) that prevented biofilm formation in the low micromolar range, and unlike typical antibiotics, only 2 to 4-fold higher concentrations were needed to significantly reduce viability and biomass of existing biofilms. Compound 2, (+)-dehydroabietic acid, was the most selective towards biofilm bacteria, achieving high killing efficacy (based on log Reduction values) and it was best tolerated by three different mammalian cell lines. Since (+)-dehydroabietic acid is an easily available compound, it holds great potential to be used as a molecular probe in biofilms-related studies as well as to serve as inspirational chemical model for the development of potent drug candidates.


Subject(s)
Abietanes/pharmacology , Biofilms/drug effects , Staphylococcus aureus/drug effects , Staphylococcus aureus/physiology , Abietanes/chemistry , Animals , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Biocompatible Materials/pharmacology , Cell Death/drug effects , Cell Line , Humans , Inhibitory Concentration 50 , Mice , Microbial Sensitivity Tests
15.
Bioorg Med Chem Lett ; 22(14): 4882-6, 2012 Jul 15.
Article in English | MEDLINE | ID: mdl-22695128

ABSTRACT

Chlamydia pneumoniae is a worldwide cause of various respiratory track diseases ranging from asymptomatic pharyngeal infection to severe, sometimes fatal pneumonia. We have previously identified 2-arylbenzimidazoles as highly active antichlamydial compounds. In this work the importance of conformational effects on the structure-activity relationship of these compounds was studied. To simplify calculations, properly substituted N-phenylbenzamides, or the corresponding heterocyclic compounds, and 2-arylbenzimidazoles were used as model compounds. They were energy minimized and the energy differences between certain conformations were calculated. The main finding was that the compounds which can more easily adopt a non-planar conformation show higher bioactivity. This finding can be utilized in designing new derivatives or in constructing a pharmacophore model.


Subject(s)
Anti-Bacterial Agents/chemistry , Benzimidazoles/chemistry , Chlamydophila pneumoniae/drug effects , Anti-Bacterial Agents/pharmacology , Benzimidazoles/pharmacology , Chlamydophila pneumoniae/growth & development , Microbial Viability/drug effects , Models, Molecular , Molecular Conformation , Structure-Activity Relationship
16.
Bioorg Med Chem ; 20(22): 6669-79, 2012 Nov 15.
Article in English | MEDLINE | ID: mdl-23062825

ABSTRACT

The presented project started by screening a library consisting of natural and natural based compounds for their acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) inhibitory activity. Active compounds were chemically clustered into groups and further tested on the human cholinesterases isoforms. The aim of the presented study was to identify compounds that could be used as leads to target two key mechanisms associated with the AD's pathogenesis simultaneously: cholinergic depletion and beta amyloid (Aß) aggregation. Berberin, palmatine and chelerythrine, chemically clustered in the so-called isoquinoline group, showed promising cholinesterase inhibitory activity and were therefore further investigated. Moreover, the compounds demonstrated moderate to good inhibition of Aß aggregation as well as the ability to disaggregate already preformed Aß aggregates in an experimental set-up using HFIP as promotor of Aß aggregates. Analysis of the kinetic mechanism of the AChE inhibition revealed chelerythrine as a mixed inhibitor. Using molecular docking studies, it was further proven that chelerythrine binds on both the catalytic site and the peripheral anionic site (PAS) of the AChE. In view of this, we went on to investigate its effect on inhibiting Aß aggregation stimulated by AChE. Chelerythrine showed inhibition of fibril formation in the same range as propidium iodide. This approach enabled for the first time to identify a cholinesterase inhibitor of natural origin-chelerythrine-acting on AChE and BChE with a dual ability to inhibit Aß aggregation as well as to disaggregate preformed Aß aggregates. This compound could be an excellent starting point paving the way to develop more successful anti-AD drugs.


Subject(s)
Acetylcholinesterase/chemistry , Amyloid beta-Peptides/chemistry , Benzophenanthridines/chemistry , Butyrylcholinesterase/chemistry , Cholinesterase Inhibitors/chemistry , Acetylcholinesterase/metabolism , Amyloid beta-Peptides/metabolism , Benzophenanthridines/chemical synthesis , Binding Sites , Butyrylcholinesterase/metabolism , Catalytic Domain , Cholinesterase Inhibitors/chemical synthesis , Humans , Isoquinolines/chemical synthesis , Isoquinolines/chemistry , Kinetics , Molecular Docking Simulation , Structure-Activity Relationship
17.
Planta ; 233(1): 37-48, 2011 Jan.
Article in English | MEDLINE | ID: mdl-20878179

ABSTRACT

A previously isolated cDNA molecule from Gerbera hybrida (Asteraceae) codes for a new chalcone synthase-like polyketide synthase, 2-pyrone synthase (2PS). 2PS is able to synthesise 4-hydroxy-6-methyl-2-pyrone (triacetolactone), a putative precursor for gerberin and parasorboside, two abundant glucosides in gerbera. In this study, we show that gerbera plants transformed with the gene for 2PS in an antisense orientation and unable to synthesise gerberin and parasorboside are susceptible to Botrytis cinerea infection. In addition to the preformed glucosides, the transgenic plants also lack several compounds that are induced in control plants when infected with the mould. Some of these induced substances are effective in inhibiting fungal growth both in vitro and in vivo. Two of the phytoalexins were identified as the aglycones of gerberin and trans-parasorboside. The third phytoalexin is a rare coumarin, 4-hydroxy-5-methylcoumarin; however, it is typical of many plants of the sunflower family Asteraceae. The coumarin cannot be structurally derived from either gerberin or parasorboside, but may be derived from a related polyketide intermediate.


Subject(s)
Asteraceae/drug effects , Asteraceae/microbiology , Botrytis/drug effects , Macrolides/pharmacology , Antifungal Agents/chemistry , Antifungal Agents/isolation & purification , Antifungal Agents/pharmacology , Asteraceae/genetics , Biological Assay , Chromatography, Thin Layer , Macrolides/chemistry , Macrolides/isolation & purification , Microbial Sensitivity Tests , Plant Diseases/microbiology , Plant Extracts/pharmacology , Plants, Genetically Modified , Polyketide Synthases/metabolism , Transformation, Genetic/drug effects
18.
Anal Biochem ; 408(1): 166-8, 2011 Jan 01.
Article in English | MEDLINE | ID: mdl-20851093

ABSTRACT

In primary drug discovery screenings and potency determinations of active acetylcholinesterase (AChE) inhibitors, different variations of the Ellman's reaction-based assay are extensively applied. However, these are prone to produce variable results. Here we studied how assay variants differing in the order of reagent addition and substrate concentrations influence potency measurements of AChE inhibitors. Three model compounds were used: tacrine, physostigmine, and a newly reported inhibitor, 1-[5-[4-[(hexahydro-1H-azepin-1-yl)carbonyl]-1-piperidinyl]-1,3,4-thiadiazol-2-yl]-2-pyrrolidinone. Different patterns of potency changes related to the different inhibition mechanisms of the compounds were detected. Recognizing this, better judgment can be applied when publishing results and selecting optimal screening assays.


Subject(s)
Acetylcholinesterase/chemistry , Cholinesterase Inhibitors/chemistry , Dithionitrobenzoic Acid/chemistry , Acetylcholinesterase/metabolism , Physostigmine/chemistry , Pyrrolidinones/chemistry , Tacrine/chemistry
19.
Bioorg Med Chem Lett ; 21(4): 1105-12, 2011 Feb 15.
Article in English | MEDLINE | ID: mdl-21273074

ABSTRACT

Dual binding site acetylcholinesterase (AChE) inhibitors are promising for the treatment of Alzheimer's disease (AD). They alleviate the cognitive deficits and AD-modifying agents, by inhibiting the ß-amyloid (Aß) peptide aggregation, through binding to both the catalytic and peripheral anionic sites, the so called dual binding site of the AChE enzyme. In this Letter, chemical features based 3D-pharmacophore models were developed based on the eight potent and structurally diverse AChE inhibitors (I-VIII) obtained from high-throughput in vitro screening technique. The best 3D-pharmacophore model, Hypo1, consists of two hydrogen-bond acceptor lipid, one hydrophobe, and two hydrophobic aliphatic features obtained by Catalyst/HIPHOP algorithm adopted in Discovery studio program. Hypo1 was used as a 3D query in sequential virtual screening study to filter three small compound databases. Further, a total of nine compounds were selected and followed on in vitro analysis. Finally, we identified two leads--Specs1 (IC(50)=3.279 µM) and Spec2 (IC(50)=5.986 µM) dual binding site compounds from Specs database, having good AChE enzyme inhibitory activity.


Subject(s)
Acetylcholinesterase/chemistry , Cholinesterase Inhibitors/chemistry , Thiophenes/chemistry , Acetylcholinesterase/metabolism , Binding Sites , Cholinesterase Inhibitors/chemical synthesis , Cholinesterase Inhibitors/pharmacology , Computer Simulation , Drug Evaluation, Preclinical , Humans , Models, Chemical , Thiophenes/chemical synthesis , Thiophenes/pharmacology
20.
Planta Med ; 77(13): 1504-11, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21341175

ABSTRACT

Prostaglandin E2 (PGE2) has a central role in inflammation and both cyclooxygenase-2 (COX-2) and prostaglandin E synthases are critical enzymes in its synthesis. In inflammation, bacterial products and cytokines enhance the expression of COX-2 and inducible microsomal prostaglandin E synthase-1 (mPGES-1) which are functionally coupled to result in increased PGE2 formation in macrophages and tissue cells. In the present study, we systematically investigated the effects of 26 naturally occurring flavonoids on PGE2 production and on COX-2 and mPGES-1 expression in activated macrophages. Twelve flavonoids, i.e., flavone, luteolin-7-glucoside, kaempferol, isorhamnetin, morin, quercetin, naringenin, taxifolin, pelargonidin, daidzein, genistein, and genistin effectively inhibited lipopolysaccharide (LPS)-induced PGE2 production. Four flavonoids (flavone, isorhamnetin, daidzein, and genistein) inhibited significantly LPS-induced COX-2 expression, while mPGES-1 expression was downregulated by kaempferol and isorhamnetin. The present study characterizes the effects of flavonoids on PGE2 production and on COX-2 and mPGES-1 expression in activated macrophages. The results add to our knowledge of the anti-inflammatory actions of flavonoids and introduce kaempferol and isorhamnetin as compounds capable of downregulating the expression of mPGES-1.


Subject(s)
Anti-Inflammatory Agents/pharmacology , Cyclooxygenase 2/drug effects , Cyclooxygenase 2/genetics , Dinoprostone/biosynthesis , Flavonoids/pharmacology , Intramolecular Oxidoreductases/drug effects , Animals , Anti-Inflammatory Agents/chemistry , Cell Line , Cell Survival/drug effects , Cyclooxygenase 2/metabolism , Dinoprostone/analysis , Down-Regulation/drug effects , Flavonoids/chemistry , Gene Expression Regulation/drug effects , Intramolecular Oxidoreductases/genetics , Intramolecular Oxidoreductases/metabolism , Lipopolysaccharides/pharmacology , Macrophages/drug effects , Macrophages/enzymology , Macrophages/metabolism , Mice , Prostaglandin-E Synthases
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