Search details
1.
Mass-spectrometry-based draft of the Arabidopsis proteome.
Nature
; 579(7799): 409-414, 2020 03.
Article
in English
| MEDLINE | ID: mdl-32188942
2.
Rescoring Peptide Spectrum Matches: Boosting Proteomics Performance by Integrating Peptide Property Predictors into Peptide Identification.
Mol Cell Proteomics
; : 100798, 2024 Jun 11.
Article
in English
| MEDLINE | ID: mdl-38871251
3.
Mass spectrometry-based draft of the mouse proteome.
Nat Methods
; 19(7): 803-811, 2022 07.
Article
in English
| MEDLINE | ID: mdl-35710609
4.
Chemical proteomics reveals the target landscape of 1,000 kinase inhibitors.
Nat Chem Biol
; 2023 Oct 30.
Article
in English
| MEDLINE | ID: mdl-37904048
5.
Oktoberfest: Open-source spectral library generation and rescoring pipeline based on Prosit.
Proteomics
; 24(8): e2300112, 2024 Apr.
Article
in English
| MEDLINE | ID: mdl-37672792
6.
Exploring crop genomes: assembly features, gene prediction accuracy, and implications for proteomics studies.
BMC Genomics
; 25(1): 619, 2024 Jun 19.
Article
in English
| MEDLINE | ID: mdl-38898442
7.
The emerging landscape of single-molecule protein sequencing technologies.
Nat Methods
; 18(6): 604-617, 2021 06.
Article
in English
| MEDLINE | ID: mdl-34099939
8.
Target deconvolution of HDAC pharmacopoeia reveals MBLAC2 as common off-target.
Nat Chem Biol
; 18(8): 812-820, 2022 08.
Article
in English
| MEDLINE | ID: mdl-35484434
9.
Reanalysis of ProteomicsDB Using an Accurate, Sensitive, and Scalable False Discovery Rate Estimation Approach for Protein Groups.
Mol Cell Proteomics
; 21(12): 100437, 2022 12.
Article
in English
| MEDLINE | ID: mdl-36328188
10.
SIMSI-Transfer: Software-Assisted Reduction of Missing Values in Phosphoproteomic and Proteomic Isobaric Labeling Data Using Tandem Mass Spectrum Clustering.
Mol Cell Proteomics
; 21(8): 100238, 2022 08.
Article
in English
| MEDLINE | ID: mdl-35462064
11.
ProteomicsDB: toward a FAIR open-source resource for life-science research.
Nucleic Acids Res
; 50(D1): D1541-D1552, 2022 01 07.
Article
in English
| MEDLINE | ID: mdl-34791421
12.
Real-Time Spectral Library Matching for Sample Multiplexed Quantitative Proteomics.
J Proteome Res
; 22(9): 2836-2846, 2023 09 01.
Article
in English
| MEDLINE | ID: mdl-37557900
13.
Toward an Integrated Machine Learning Model of a Proteomics Experiment.
J Proteome Res
; 22(3): 681-696, 2023 03 03.
Article
in English
| MEDLINE | ID: mdl-36744821
14.
Assessment and Prediction of Human Proteotypic Peptide Stability for Proteomics Quantification.
Anal Chem
; 95(37): 13746-13749, 2023 09 19.
Article
in English
| MEDLINE | ID: mdl-37676919
15.
Meltome atlas-thermal proteome stability across the tree of life.
Nat Methods
; 17(5): 495-503, 2020 05.
Article
in English
| MEDLINE | ID: mdl-32284610
16.
Spectral Prediction Features as a Solution for the Search Space Size Problem in Proteogenomics.
Mol Cell Proteomics
; 20: 100076, 2021.
Article
in English
| MEDLINE | ID: mdl-33823297
17.
Predicting fragment intensities and retention time of iTRAQ- and TMTPro-labeled peptides with Prosit-TMT.
Proteomics
; 22(19-20): e2100257, 2022 10.
Article
in English
| MEDLINE | ID: mdl-35578405
18.
Prosit Transformer: A transformer for Prediction of MS2 Spectrum Intensities.
J Proteome Res
; 21(5): 1359-1364, 2022 05 06.
Article
in English
| MEDLINE | ID: mdl-35413196
19.
Interpretation of the DOME Recommendations for Machine Learning in Proteomics and Metabolomics.
J Proteome Res
; 21(4): 1204-1207, 2022 04 01.
Article
in English
| MEDLINE | ID: mdl-35119864
20.
Prosit-TMT: Deep Learning Boosts Identification of TMT-Labeled Peptides.
Anal Chem
; 94(20): 7181-7190, 2022 05 24.
Article
in English
| MEDLINE | ID: mdl-35549156