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1.

Distinguishing Gastric/Esophageal Adenocarcinoma from Pancreatic Adenocarcinoma Using Methylation-Based Droplet Digital PCR.

Xia, Daniel; Nowak, Klaudia; Leon, Alberto Jose; Winegarden, Neil; Wong, Ada; Boruvka, Natalie; Diamandis, Phedias; Chetty, Runjan; Pugh, Trevor; Zhang, Tong; Aldape, Kenneth; Stockley, Tracy; Serra, Stefano.

Lab Invest ; 103(7): 100145, 2023 07.

Article in English | MEDLINE | ID: mdl-37004911

2.

GABA promotes ß-cell proliferation, but does not overcome impaired glucose homeostasis associated with diet-induced obesity.

Untereiner, Ashley; Abdo, Shaaban; Bhattacharjee, Alpana; Gohil, Himaben; Pourasgari, Farzaneh; Ibeh, Neke; Lai, Mi; Batchuluun, Battsetseg; Wong, Anthony; Khuu, Nicholas; Liu, Ying; Al Rijjal, Dana; Winegarden, Neil; Virtanen, Carl; Orser, Beverley A; Cabrera, Over; Varga, Gabor; Rocheleau, Jonathan; Dai, Feihan F; Wheeler, Michael B.

FASEB J ; 33(3): 3968-3984, 2019 03.

Article in English | MEDLINE | ID: mdl-30509117

3.

Gene expression signatures prognostic for relapse in stage I testicular germ cell tumours.

Lewin, Jeremy; Soltan Ghoraie, Laleh; Bedard, Philippe L; Hamilton, Robert J; Chung, Peter; Moore, Malcolm; Jewett, Michael A S; Anson-Cartwright, Lynn; Virtanen, Carl; Winegarden, Neil; Tsao, Julie; Warde, Padraig; Sweet, Joan; Haibe-Kains, Benjamin; Hansen, Aaron R.

BJU Int ; 122(5): 814-822, 2018 11.

Article in English | MEDLINE | ID: mdl-29726090

4.

Characterization of the minimal residual disease state reveals distinct evolutionary trajectories of human glioblastoma.

Qazi, Maleeha A; Salim, Sabra K; Brown, Kevin R; Mikolajewicz, Nicholas; Savage, Neil; Han, Hong; Subapanditha, Minomi K; Bakhshinyan, David; Nixon, Allison; Vora, Parvez; Desmond, Kimberly; Chokshi, Chirayu; Singh, Mohini; Khoo, Amanda; Macklin, Andrew; Khan, Shahbaz; Tatari, Nazanin; Winegarden, Neil; Richards, Laura; Pugh, Trevor; Bock, Nicholas; Mansouri, Alireza; Venugopal, Chitra; Kislinger, Thomas; Goyal, Sidhartha; Moffat, Jason; Singh, Sheila K.

Cell Rep ; 40(13): 111420, 2022 09 27.

Article in English | MEDLINE | ID: mdl-36170831

5.

Telomere dysfunction cooperates with epigenetic alterations to impair murine embryonic stem cell fate commitment.

Criqui, Mélanie; Qamra, Aditi; Chu, Tsz Wai; Sharma, Monika; Tsao, Julissa; Henry, Danielle A; Barsyte-Lovejoy, Dalia; Arrowsmith, Cheryl H; Winegarden, Neil; Lupien, Mathieu; Harrington, Lea.

Elife ; 92020 04 16.

Article in English | MEDLINE | ID: mdl-32297856

6.

Wnt activation as a therapeutic strategy in medulloblastoma.

Manoranjan, Branavan; Venugopal, Chitra; Bakhshinyan, David; Adile, Ashley A; Richards, Laura; Kameda-Smith, Michelle M; Whitley, Owen; Dvorkin-Gheva, Anna; Subapanditha, Minomi; Savage, Neil; Tatari, Nazanin; McKenna, Dillon; Bassey-Archibong, Blessing; Winegarden, Neil; Hallett, Robin; Provias, John P; Yarascavitch, Blake; Ajani, Olufemi; Fleming, Adam; Bader, Gary D; Pugh, Trevor J; Doble, Bradley W; Singh, Sheila K.

Nat Commun ; 11(1): 4323, 2020 08 28.

Article in English | MEDLINE | ID: mdl-32859895

7.

Microarray-based DNA methylation profiling: technology and applications.

Schumacher, Axel; Kapranov, Philipp; Kaminsky, Zachary; Flanagan, James; Assadzadeh, Abbas; Yau, Patrick; Virtanen, Carl; Winegarden, Neil; Cheng, Jill; Gingeras, Thomas; Petronis, Arturas.

Nucleic Acids Res ; 34(2): 528-42, 2006.

Article in English | MEDLINE | ID: mdl-16428248

8.

Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.

MacParland, Sonya A; Liu, Jeff C; Ma, Xue-Zhong; Innes, Brendan T; Bartczak, Agata M; Gage, Blair K; Manuel, Justin; Khuu, Nicholas; Echeverri, Juan; Linares, Ivan; Gupta, Rahul; Cheng, Michael L; Liu, Lewis Y; Camat, Damra; Chung, Sai W; Seliga, Rebecca K; Shao, Zigong; Lee, Elizabeth; Ogawa, Shinichiro; Ogawa, Mina; Wilson, Michael D; Fish, Jason E; Selzner, Markus; Ghanekar, Anand; Grant, David; Greig, Paul; Sapisochin, Gonzalo; Selzner, Nazia; Winegarden, Neil; Adeyi, Oyedele; Keller, Gordon; Bader, Gary D; McGilvray, Ian D.

Nat Commun ; 9(1): 4383, 2018 10 22.

Article in English | MEDLINE | ID: mdl-30348985

9.

Top-down standards will not serve systems biology.

Quackenbush, John; Stoeckert, Christian; Ball, Catherine; Brazma, Alvis; Gentleman, Robert; Huber, Wolfgang; Irizarry, Rafael; Salit, Marc; Sherlock, Gavin; Spellman, Paul; Winegarden, Neil.

Nature ; 440(7080): 24, 2006 Mar 02.

Article in English | MEDLINE | ID: mdl-16511469

10.

Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA.

Iscove, Norman N; Barbara, Mary; Gu, Marie; Gibson, Meredith; Modi, Carolyn; Winegarden, Neil.

Nat Biotechnol ; 20(9): 940-3, 2002 Sep.

Article in English | MEDLINE | ID: mdl-12172558

11.

CpG Island microarray probe sequences derived from a physical library are representative of CpG Islands annotated on the human genome.

Heisler, Lawrence E; Torti, Dax; Boutros, Paul C; Watson, John; Chan, Charles; Winegarden, Neil; Takahashi, Mark; Yau, Patrick; Huang, Tim H-M; Farnham, Peggy J; Jurisica, Igor; Woodgett, James R; Bremner, Rod; Penn, Linda Z; Der, Sandy D.

Nucleic Acids Res ; 33(9): 2952-61, 2005.

Article in English | MEDLINE | ID: mdl-15911630

12.

Discovery of biomarkers of endometrial receptivity through a minimally invasive approach: a validation study with implications for assisted reproduction.

Chan, Crystal; Virtanen, Carl; Winegarden, Neil A; Colgan, Terence J; Brown, Theodore J; Greenblatt, Ellen M.

Fertil Steril ; 100(3): 810-7, 2013 Sep.

Article in English | MEDLINE | ID: mdl-23725802

13.

Submission of microarray data to public repositories.

Ball, Catherine A; Brazma, Alvis; Causton, Helen; Chervitz, Steve; Edgar, Ron; Hingamp, Pascal; Matese, John C; Parkinson, Helen; Quackenbush, John; Ringwald, Martin; Sansone, Susanna-Assunta; Sherlock, Gavin; Spellman, Paul; Stoeckert, Chris; Tateno, Yoshio; Taylor, Ronald; White, Joseph; Winegarden, Neil.

PLoS Biol ; 2(9): E317, 2004 Sep.

Article in English | MEDLINE | ID: mdl-15340489

14.

In vivo optical imaging of tumor and microvascular response to ionizing radiation.

Maeda, Azusa; Leung, Michael K K; Conroy, Leigh; Chen, Yonghong; Bu, Jiachuan; Lindsay, Patricia E; Mintzberg, Shani; Virtanen, Carl; Tsao, Julissa; Winegarden, Neil A; Wang, Yanchun; Morikawa, Lily; Vitkin, I Alex; Jaffray, David A; Hill, Richard P; DaCosta, Ralph S.

PLoS One ; 7(8): e42133, 2012.

Article in English | MEDLINE | ID: mdl-22927920

15.

Microarrays in cancer: moving from hype to clinical reality.

Winegarden, Neil.

Lancet ; 362(9394): 1428, 2003 Nov 01.

Article in English | MEDLINE | ID: mdl-14602430

16.

Profiling microRNA expression with the Illumina BeadChip platform.

Tsao, Julissa; Yau, Patrick; Winegarden, Neil.

Methods Mol Biol ; 632: 73-86, 2010.

Article in English | MEDLINE | ID: mdl-20217572

17.

Standards for microarray data: an open letter.

Ball, Catherine; Brazma, Alvis; Causton, Helen; Chervitz, Steve; Edgar, Ron; Hingamp, Pascal; Matese, John C; Parkinson, Helen; Quackenbush, John; Ringwald, Martin; Sansone, Susanna-Assunta; Sherlock, Gavin; Spellman, Paul; Stoeckert, Christian; Tateno, Yoshio; Taylor, Ronald; White, Joseph; Winegarden, Neil.

Environ Health Perspect ; 112(12): A666-7, 2004 Aug.

Article in English | MEDLINE | ID: mdl-15345376

18.

Problems with co-funding in Canada.

Tyers, Mike; Brown, Eric; Andrews, David W; Bergeron, John J M; Boone, Charles; Bremner, Roderick; Bussey, Howard A; Cross, James C; Davies, Julian E; Desjardins, Michel; Dick, John E; Dumont, Daniel J; Durocher, Daniel; Ellison, Michael J; Golding, G Brian; Gray, Michael W; Harrington, Lea A; Hieter, Philip A; Johnston, Gerald; Kelvin, David J; McCarry, Brian E; Michnick, Stephen W; Ouellette, Francis; Pearlman, Ron E; Penn, Linda J Z; Pelletier, Jerry; Rachubinski, Richard A; Rennie, Paul S; Rotin, Daniela; Rottapel, Robert; Sadowski, Ivan; Sicheri, Frank; Siminovitch, Lou; Sonenberg, Nahum; Siu, K W Michael; Tremblay, Michel L; Winegarden, Neil; Wozniak, Richard W; Wright, Gerard D; Woodgett, James R.

Science ; 308(5730): 1867, 2005 Jun 24.

Article in English | MEDLINE | ID: mdl-15976286

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