Genetic Variants Associated with Circulating Parathyroid Hormone.

Parathyroid hormone (PTH) is a primary calcium regulatory hormone. Elevated serum PTH concentrations in primary and secondary hyperparathyroidism have been associated with bone disease, hypertension, and in some studies, cardiovascular mortality. Genetic causes of variation in circulating PTH concentrations are incompletely understood. We performed a genome-wide association study of serum PTH concentrations among 29,155 participants of European ancestry from 13 cohort studies (n=22,653 and n=6502 in discovery and replication analyses, respectively). We evaluated the association of single nucleotide polymorphisms (SNPs) with natural log-transformed PTH concentration adjusted for age, sex, season, study site, and principal components of ancestry. We discovered associations of SNPs from five independent regions with serum PTH concentration, including the strongest association with rs6127099 upstream of CYP24A1 (P=4.2 × 10-53), a gene that encodes the primary catabolic enzyme for 1,25-dihydroxyvitamin D and 25-dihydroxyvitamin D. Each additional copy of the minor allele at this SNP associated with 7% higher serum PTH concentration. The other SNPs associated with serum PTH concentration included rs4074995 within RGS14 (P=6.6 × 10-17), rs219779 adjacent to CLDN14 (P=3.5 × 10-16), rs4443100 near RTDR1 (P=8.7 × 10-9), and rs73186030 near CASR (P=4.8 × 10-8). Of these five SNPs, rs6127099, rs4074995, and rs219779 replicated. Thus, common genetic variants located near genes involved in vitamin D metabolism and calcium and renal phosphate transport associated with differences in circulating PTH concentrations. Future studies could identify the causal variants at these loci, and the clinical and functional relevance of these variants should be pursued.

Generalized additive models for the analysis of EQ-5D utility data.

BACKGROUND: Measured utility data have a discrete distribution, and the discreteness is particularly pronounced for EQ-5D utilities. Given the discreteness of the data, modeling the distribution parametrically is likely to be difficult. Moreover, since the distribution is bounded, the linearity assumptions made by many models are questionable. This article suggests using semi-parametric models and illustrates the use of generalized additive models (GAMs) for handling nonlinear associations. METHODS: A simulation study is used to explore whether bias arises when applying parametric models to discrete utility data. A further simulation investigates the bias in semi-parametric linear and quasi-beta regression models when the assumed linearity does not hold and also investigates the use of GAMs. The use of GAMs in practice is shown through a recent study of health utilities among patients with diabetes. RESULTS: Using parametric beta models to analyze discrete EQ-5D utility data led to substantial bias. Both semi-parametric linear regression and quasi-beta regression led to biased estimates of marginal and incremental effects when the mean model was misspecified. The use of GAMs reduced these biases. CONCLUSIONS: Parametric models for EQ-5D utility data should be used with caution. Semi-parametric modeling of utility data should check for nonlinearity. GAMs can help in diagnosing and accommodating nonlinearity.

Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia.

Refractive error is the most common eye disorder worldwide and is a prominent cause of blindness. Myopia affects over 30% of Western populations and up to 80% of Asians. The CREAM consortium conducted genome-wide meta-analyses, including 37,382 individuals from 27 studies of European ancestry and 8,376 from 5 Asian cohorts. We identified 16 new loci for refractive error in individuals of European ancestry, of which 8 were shared with Asians. Combined analysis identified 8 additional associated loci. The new loci include candidate genes with functions in neurotransmission (GRIA4), ion transport (KCNQ5), retinoic acid metabolism (RDH5), extracellular matrix remodeling (LAMA2 and BMP2) and eye development (SIX6 and PRSS56). We also confirmed previously reported associations with GJD2 and RASGRF1. Risk score analysis using associated SNPs showed a tenfold increased risk of myopia for individuals carrying the highest genetic load. Our results, based on a large meta-analysis across independent multiancestry studies, considerably advance understanding of the mechanisms involved in refractive error and myopia.