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1.

Divergent clonal differentiation trajectories of T cell exhaustion.

Daniel, Bence; Yost, Kathryn E; Hsiung, Sunnie; Sandor, Katalin; Xia, Yu; Qi, Yanyan; Hiam-Galvez, Kamir J; Black, Mollie; J Raposo, Colin; Shi, Quanming; Meier, Stefanie L; Belk, Julia A; Giles, Josephine R; Wherry, E John; Chang, Howard Y; Egawa, Takeshi; Satpathy, Ansuman T.

Nat Immunol ; 23(11): 1614-1627, 2022 11.

Article in English | MEDLINE | ID: mdl-36289450

2.

Strength of tonic T cell receptor signaling instructs T follicular helper cell-fate decisions.

Bartleson, Juliet M; Viehmann Milam, Ashley A; Donermeyer, David L; Horvath, Stephen; Xia, Yu; Egawa, Takeshi; Allen, Paul M.

Nat Immunol ; 21(11): 1384-1396, 2020 11.

Article in English | MEDLINE | ID: mdl-32989327

3.

BCL6-dependent TCF-1⁺ progenitor cells maintain effector and helper CD4⁺ T cell responses to persistent antigen.

Xia, Yu; Sandor, Katalin; Pai, Joy A; Daniel, Bence; Raju, Saravanan; Wu, Renee; Hsiung, Sunnie; Qi, Yanyan; Yangdon, Tenzin; Okamoto, Mariko; Chou, Chun; Hiam-Galvez, Kamir J; Schreiber, Robert D; Murphy, Kenneth M; Satpathy, Ansuman T; Egawa, Takeshi.

Immunity ; 55(7): 1200-1215.e6, 2022 07 12.

Article in English | MEDLINE | ID: mdl-35637103

4.

A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human.

Vo, Tommy V; Das, Jishnu; Meyer, Michael J; Cordero, Nicolas A; Akturk, Nurten; Wei, Xiaomu; Fair, Benjamin J; Degatano, Andrew G; Fragoza, Robert; Liu, Lisa G; Matsuyama, Akihisa; Trickey, Michelle; Horibata, Sachi; Grimson, Andrew; Yamano, Hiroyuki; Yoshida, Minoru; Roth, Frederick P; Pleiss, Jeffrey A; Xia, Yu; Yu, Haiyuan.

Cell ; 164(1-2): 310-323, 2016 Jan 14.

Article in English | MEDLINE | ID: mdl-26771498

5.

Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing.

Yang, Xinping; Coulombe-Huntington, Jasmin; Kang, Shuli; Sheynkman, Gloria M; Hao, Tong; Richardson, Aaron; Sun, Song; Yang, Fan; Shen, Yun A; Murray, Ryan R; Spirohn, Kerstin; Begg, Bridget E; Duran-Frigola, Miquel; MacWilliams, Andrew; Pevzner, Samuel J; Zhong, Quan; Wanamaker, Shelly A; Tam, Stanley; Ghamsari, Lila; Sahni, Nidhi; Yi, Song; Rodriguez, Maria D; Balcha, Dawit; Tan, Guihong; Costanzo, Michael; Andrews, Brenda; Boone, Charles; Zhou, Xianghong J; Salehi-Ashtiani, Kourosh; Charloteaux, Benoit; Chen, Alyce A; Calderwood, Michael A; Aloy, Patrick; Roth, Frederick P; Hill, David E; Iakoucheva, Lilia M; Xia, Yu; Vidal, Marc.

Cell ; 164(4): 805-17, 2016 02 11.

Article in English | MEDLINE | ID: mdl-26871637

6.

Differential usage of transcriptional repressor Zeb2 enhancers distinguishes adult and embryonic hematopoiesis.

Huang, Xiao; Ferris, Stephen T; Kim, Sunkyung; Choudhary, Mayank N K; Belk, Julia A; Fan, Changxu; Qi, Yanyan; Sudan, Raki; Xia, Yu; Desai, Pritesh; Chen, Jing; Ly, Nghi; Shi, Quanming; Bagadia, Prachi; Liu, Tiantian; Guilliams, Martin; Egawa, Takeshi; Colonna, Marco; Diamond, Michael S; Murphy, Theresa L; Satpathy, Ansuman T; Wang, Ting; Murphy, Kenneth M.

Immunity ; 54(7): 1417-1432.e7, 2021 07 13.

Article in English | MEDLINE | ID: mdl-34004142

7.

Widespread macromolecular interaction perturbations in human genetic disorders.

Sahni, Nidhi; Yi, Song; Taipale, Mikko; Fuxman Bass, Juan I; Coulombe-Huntington, Jasmin; Yang, Fan; Peng, Jian; Weile, Jochen; Karras, Georgios I; Wang, Yang; Kovács, István A; Kamburov, Atanas; Krykbaeva, Irina; Lam, Mandy H; Tucker, George; Khurana, Vikram; Sharma, Amitabh; Liu, Yang-Yu; Yachie, Nozomu; Zhong, Quan; Shen, Yun; Palagi, Alexandre; San-Miguel, Adriana; Fan, Changyu; Balcha, Dawit; Dricot, Amelie; Jordan, Daniel M; Walsh, Jennifer M; Shah, Akash A; Yang, Xinping; Stoyanova, Ani K; Leighton, Alex; Calderwood, Michael A; Jacob, Yves; Cusick, Michael E; Salehi-Ashtiani, Kourosh; Whitesell, Luke J; Sunyaev, Shamil; Berger, Bonnie; Barabási, Albert-László; Charloteaux, Benoit; Hill, David E; Hao, Tong; Roth, Frederick P; Xia, Yu; Walhout, Albertha J M; Lindquist, Susan; Vidal, Marc.

Cell ; 161(3): 647-660, 2015 Apr 23.

Article in English | MEDLINE | ID: mdl-25910212

8.

Combinatorial Single-Cell Analyses of Granulocyte-Monocyte Progenitor Heterogeneity Reveals an Early Uni-potent Neutrophil Progenitor.

Kwok, Immanuel; Becht, Etienne; Xia, Yu; Ng, Melissa; Teh, Ye Chean; Tan, Leonard; Evrard, Maximilien; Li, Jackson L Y; Tran, Hoa T N; Tan, Yingrou; Liu, Dehua; Mishra, Archita; Liong, Ka Hang; Leong, Keith; Zhang, Yuning; Olsson, Andre; Mantri, Chinmay Kumar; Shyamsunder, Pavithra; Liu, Zhaoyuan; Piot, Cecile; Dutertre, Charles-Antoine; Cheng, Hui; Bari, Sudipto; Ang, Nicholas; Biswas, Subhra K; Koeffler, H Philip; Tey, Hong Liang; Larbi, Anis; Su, I-Hsin; Lee, Bernett; St John, Ashley; Chan, Jerry K Y; Hwang, William Y K; Chen, Jinmiao; Salomonis, Nathan; Chong, Shu Zhen; Grimes, H Leighton; Liu, Bing; Hidalgo, Andrés; Newell, Evan W; Cheng, Tao; Ginhoux, Florent; Ng, Lai Guan.

Immunity ; 53(2): 303-318.e5, 2020 08 18.

Article in English | MEDLINE | ID: mdl-32579887

9.

Vertical organic electrochemical transistors for complementary circuits.

Huang, Wei; Chen, Jianhua; Yao, Yao; Zheng, Ding; Ji, Xudong; Feng, Liang-Wen; Moore, David; Glavin, Nicholas R; Xie, Miao; Chen, Yao; Pankow, Robert M; Surendran, Abhijith; Wang, Zhi; Xia, Yu; Bai, Libing; Rivnay, Jonathan; Ping, Jianfeng; Guo, Xugang; Cheng, Yuhua; Marks, Tobin J; Facchetti, Antonio.

Nature ; 613(7944): 496-502, 2023 01.

Article in English | MEDLINE | ID: mdl-36653571

10.

Transition metal-catalysed molecular n-doping of organic semiconductors.

Guo, Han; Yang, Chi-Yuan; Zhang, Xianhe; Motta, Alessandro; Feng, Kui; Xia, Yu; Shi, Yongqiang; Wu, Ziang; Yang, Kun; Chen, Jianhua; Liao, Qiaogan; Tang, Yumin; Sun, Huiliang; Woo, Han Young; Fabiano, Simone; Facchetti, Antonio; Guo, Xugang.

Nature ; 599(7883): 67-73, 2021 11.

Article in English | MEDLINE | ID: mdl-34732866

11.

Continuous ammonia synthesis from water and nitrogen via contact electrification.

Li, Juan; Xia, Yu; Song, Xiaowei; Chen, Bolei; Zare, Richard N.

Proc Natl Acad Sci U S A ; 121(4): e2318408121, 2024 Jan 23.

Article in English | MEDLINE | ID: mdl-38232282

12.

Dependence on relative humidity in the formation of reactive oxygen species in water droplets.

Mofidfar, Mohammad; Mehrgardi, Masoud A; Xia, Yu; Zare, Richard N.

Proc Natl Acad Sci U S A ; 121(12): e2315940121, 2024 Mar 19.

Article in English | MEDLINE | ID: mdl-38489384

13.

Genome enrichment of rare and unknown species from complicated microbiomes by nanopore selective sequencing.

Sun, Yuhong; Cheng, Zhanwen; Li, Xiang; Yang, Qing; Zhao, Bixi; Wu, Ziqi; Xia, Yu.

Genome Res ; 33(4): 612-621, 2023 04.

Article in English | MEDLINE | ID: mdl-37041035

14.

Author Correction: Molecular heterogeneity drives reconfigurable nematic liquid crystal drops.

Wei, Wei-Shao; Xia, Yu; Ettinger, Sophie; Yang, Shu; Yodh, A G.

Nature ; 585(7824): E5, 2020 Sep.

Article in English | MEDLINE | ID: mdl-32826961

15.

Contact between water vapor and silicate surface causes abiotic formation of reactive oxygen species in an anoxic atmosphere.

Xia, Yu; Li, Juan; Zhang, Yuanzheng; Yin, Yongguang; Chen, Bolei; Liang, Yong; Jiang, Guibin; Zare, Richard N.

Proc Natl Acad Sci U S A ; 120(30): e2302014120, 2023 Jul 25.

Article in English | MEDLINE | ID: mdl-37459548

16.

Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration.

Cao, Yingxi; Xia, Yu; Balowski, Joseph J; Ou, Jianhong; Song, Lingyun; Safi, Alexias; Curtis, Timothy; Crawford, Gregory E; Poss, Kenneth D; Cao, Jingli.

Development ; 149(4)2022 02 15.

Article in English | MEDLINE | ID: mdl-35179181

17.

Arabidopsis ERdj3B coordinates with ERECTA-family receptor kinases to regulate ovule development and the heat stress response.

Leng, Ya-Jun; Yao, Ya-Sen; Yang, Ke-Zhen; Wu, Pei-Xiang; Xia, Yu-Xin; Zuo, Chao-Ran; Luo, Jing-Hong; Wang, Pu; Liu, Yang-Yang; Zhang, Xue-Qin; Ye, De; Le, Jie; Chen, Li-Qun.

Plant Cell ; 34(10): 3665-3684, 2022 09 27.

Article in English | MEDLINE | ID: mdl-35897146

18.

Reconciling ASPP-p53 binding mode discrepancies through an ensemble binding framework that bridges crystallography and NMR data.

Liu, Te; Huang, Sichao; Zhang, Qian; Xia, Yu; Zhang, Manjie; Sun, Bin.

PLoS Comput Biol ; 20(2): e1011519, 2024 Feb.

Article in English | MEDLINE | ID: mdl-38324587

19.

Molecular heterogeneity drives reconfigurable nematic liquid crystal drops.

Wei, Wei-Shao; Xia, Yu; Ettinger, Sophie; Yang, Shu; Yodh, A G.

Nature ; 576(7787): 433-436, 2019 12.

Article in English | MEDLINE | ID: mdl-31853082

20.

Water-solid contact electrification causes hydrogen peroxide production from hydroxyl radical recombination in sprayed microdroplets.

Chen, Bolei; Xia, Yu; He, Rongxiang; Sang, Hongqian; Zhang, Wenchang; Li, Juan; Chen, Lufeng; Wang, Pu; Guo, Shishang; Yin, Yongguang; Hu, Ligang; Song, Maoyong; Liang, Yong; Wang, Yawei; Jiang, Guibin; Zare, Richard N.

Proc Natl Acad Sci U S A ; 119(32): e2209056119, 2022 08 09.

Article in English | MEDLINE | ID: mdl-35914139

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