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1.
Chembiochem ; 16(10): 1415-9, 2015 Jul 06.
Article in English | MEDLINE | ID: mdl-25930950

ABSTRACT

We have developed a collagen-mRNA platform for controllable protein production that is intended to be less prone to the problems associated with commonly used mRNA therapy as well as with collagen skin-healing procedures. A collagen mimic was constructed according to a recombinant method and was used as scaffold for translating mRNA chains into proteins. Cysteines were genetically inserted into the collagen chain at positions allowing efficient ribosome translation activity while minimizing mRNA misfolding and degradation. Enhanced green fluorescence protein (eGFP) mRNA bound to collagen was successfully translated by cell-free Escherichia coli ribosomes. This system enabled an accurate control of specific protein synthesis by monitoring expression time and level. Luciferase-mRNA was also translated on collagen scaffold by eukaryotic cell extracts. Thus we have demonstrated the feasibility of controllable protein synthesis on collagen scaffolds by ribosomal machinery.


Subject(s)
Cell-Free System , Collagen/genetics , Protein Biosynthesis , RNA, Messenger/genetics , Cell-Free System/metabolism , Collagen/chemistry , Escherichia coli/genetics , Green Fluorescent Proteins/analysis , Green Fluorescent Proteins/genetics , Luciferases/analysis , Luciferases/genetics , Luminescent Agents/analysis , Luminescent Agents/metabolism , Maltose-Binding Proteins/chemistry , Maltose-Binding Proteins/genetics , Protein Multimerization , Protein Stability , RNA, Messenger/chemistry , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics
2.
Brief Funct Genomics ; 2024 Jun 06.
Article in English | MEDLINE | ID: mdl-38841796

ABSTRACT

RNA modifications include not only methylation modifications, such as m6A, but also acetylation modifications, which constitute a complex interaction involving "writers," "readers," and "erasers" that play crucial roles in growth, genetics, and disease. N4-acetylcytidine (ac4C) is an ancient and highly conserved RNA modification that plays a profound role in the pathogenesis of a wide range of diseases. This review provides insights into the functional impact of ac4C modifications in disease and introduces new perspectives for disease treatment. These studies provide important insights into the biological functions of post-transcriptional RNA modifications and their potential roles in disease mechanisms, offering new perspectives and strategies for disease treatment.

3.
Int J Nanomedicine ; 11: 5989-6002, 2016.
Article in English | MEDLINE | ID: mdl-27956830

ABSTRACT

Graphene oxides (GOs) with different surface characteristics, such as size, reduction degree and charge, are prepared, and their effects on the specificity of polymerase chain reaction (PCR) are investigated. In this study, we demonstrate that GO with a large size and high reduction degree is superior to small and nonreduced GO in enhancing the specificity of PCR. Negatively charged polyacrylic acid (PAA), positively charged polyacrylamide (PAM), neutral polyethylene glycol (PEG) and zwitterionic polymer poly(sulfobetaine) (pSB) are used to modify GO. The PCR specificity-enhancing ability increases in the following order: GO-PAA < GO-PAM < GO-PEG < GO-pSB. Thus, zwitterionic polymer-modified GO is superior to other GO derivatives with different charges in enhancing the specificity of PCR. GO derivatives are also successfully used to enhance the specificity of PCR for the amplification of human mitochondrial DNA using blood genomic DNA as template. Molecular dynamics simulations and molecular docking are performed to elucidate the interaction between the polymers and Pfu DNA polymerase. Our data demonstrate that the size, reduction degree and surface charge of GO affect the specificity of PCR. Based on our results, zwitterionic polymer-modified GO may be used as an efficient additive for enhancing the specificity of PCR.


Subject(s)
Betaine/analogs & derivatives , Graphite/chemistry , Oxides/chemistry , Polymerase Chain Reaction/methods , Polymers/chemistry , Acrylic Resins/chemistry , Betaine/chemistry , DNA/analysis , DNA, Mitochondrial/analysis , Electrophoresis, Agar Gel , Humans , Molecular Docking Simulation , Polyethylene Glycols/chemistry , Sensitivity and Specificity , Solvents , Surface Properties
4.
ACS Nano ; 10(3): 3267-81, 2016 Mar 22.
Article in English | MEDLINE | ID: mdl-26855010

ABSTRACT

The unique physicochemical properties of two-dimensional (2D) graphene oxide (GO) could greatly benefit the biomedical field; however, recent research demonstrated that GO could induce in vitro and in vivo toxicity. We determined the mechanism of GO induced toxicity, and our in vitro experiments revealed that pristine GO could impair cell membrane integrity and functions including regulation of membrane- and cytoskeleton-associated genes, membrane permeability, fluidity and ion channels. Furthermore, GO induced platelet depletion, pro-inflammatory response and pathological changes of lung and liver in mice. To improve the biocompatibility of pristine GO, we prepared a series of GO derivatives including aminated GO (GO-NH2), poly(acrylamide)-functionalized GO (GO-PAM), poly(acrylic acid)-functionalized GO (GO-PAA) and poly(ethylene glycol)-functionalized GO (GO-PEG), and compared their toxicity with pristine GO in vitro and in vivo. Among these GO derivatives, GO-PEG and GO-PAA induced less toxicity than pristine GO, and GO-PAA was the most biocompatible one in vitro and in vivo. The differences in biocompatibility were due to the differential compositions of protein corona, especially immunoglobulin G (IgG), formed on their surfaces that determine their cell membrane interaction and cellular uptake, the extent of platelet depletion in blood, thrombus formation under short-term exposure and the pro-inflammatory effects under long-term exposure. Overall, our combined data delineated the key molecular mechanisms underlying the in vivo and in vitro biological behaviors and toxicity of pristine GO, and identified a safer GO derivative that could be used for future applications.


Subject(s)
Acrylic Resins/chemistry , Biocompatible Materials/chemistry , Graphite/chemistry , Oxides/chemistry , Polyethylene Glycols/chemistry , Acrylic Resins/metabolism , Acrylic Resins/toxicity , Animals , Biocompatible Materials/metabolism , Biocompatible Materials/toxicity , Cell Line , Endocytosis , Graphite/metabolism , Graphite/toxicity , Male , Mice , Mice, Inbred BALB C , Oxides/metabolism , Oxides/toxicity , Polyethylene Glycols/metabolism , Polyethylene Glycols/toxicity , Protein Corona/analysis , Protein Corona/metabolism , Surface Properties
5.
Sci Rep ; 5: 10171, 2015 May 28.
Article in English | MEDLINE | ID: mdl-26018135

ABSTRACT

Inhibiting amyloid-ß (Aß) fibril formation is the primary therapeutic strategy for Alzheimer's disease. Several small molecules and nanomaterials have been used to inhibit Aß fibril formation. However, insufficient inhibition efficiency or poor metabolization limits their further applications. Here, we used hemin to exfoliate few-layer Bi(2)Se(3) in aqueous solution. Then we separated few-layer Bi(2)Se(3) with different sizes and thicknesses by fractional centrifugation, and used them to attempt to inhibit Aß(1-42) aggregation. The results show that smaller and thinner few-layer Bi(2)Se(3) had the highest inhibition efficiency. We further investigated the interaction between few-layer Bi(2)Se(3) and Aß(1-42) monomers. The results indicate that the inhibition effect may be due to the high adsorption capacity of few-layer Bi(2)Se(3) for Aß(1-42) monomers. Few-layer Bi(2)Se(3) also decreased Aß-mediated peroxidase-like activity and cytotoxicity according to in vitro neurotoxicity studies under physiological conditions. Therefore, our work shows the potential for applications of few-layer Bi(2)Se(3) in the biomedical field.


Subject(s)
Amyloid beta-Peptides/chemistry , Bismuth/chemistry , Hemin/chemistry , Peptide Fragments/chemistry , Selenium Compounds/chemistry , Ammonia/chemistry , Amyloid beta-Peptides/metabolism , Amyloid beta-Peptides/toxicity , Animals , Cell Line , Cell Survival/drug effects , Circular Dichroism , Dynamic Light Scattering , Hemin/metabolism , Microscopy, Atomic Force , Microscopy, Electron, Scanning , Peptide Fragments/metabolism , Peptide Fragments/toxicity , Rabbits , Water/chemistry
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