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1.
Plant J ; 113(2): 387-401, 2023 01.
Article in English | MEDLINE | ID: mdl-36471650

ABSTRACT

Formate dehydrogenase (FDH; EC 1.2.1.2.) has been implicated in plant responses to a variety of stresses, including aluminum (Al) stress in acidic soils. However, the role of this enzyme in Al tolerance is not yet fully understood, and how FDH gene expression is regulated is unknown. Here, we report the identification and functional characterization of the tomato (Solanum lycopersicum) SlFDH gene. SlFDH encodes a mitochondria-localized FDH with Km values of 2.087 mm formate and 29.1 µm NAD+ . Al induced the expression of SlFDH in tomato root tips, but other metals did not, as determined by quantitative reverse transcriptase-polymerase chain reaction. CRISPR/Cas9-generated SlFDH knockout lines were more sensitive to Al stress and formate than wild-type plants. Formate failed to induce SlFDH expression in the tomato root apex, but NAD+ accumulated in response to Al stress. Co-expression network analysis and interaction analysis between genomic DNA and transcription factors (TFs) using PlantRegMap identified seven TFs that might regulate SlFDH expression. One of these TFs, SlSTOP1, positively regulated SlFDH expression by directly binding to its promoter, as demonstrated by a dual-luciferase reporter assay and electrophoretic mobility shift assay. The Al-induced expression of SlFDH was completely abolished in Slstop1 mutants, indicating that SlSTOP1 is a core regulator of SlFDH expression under Al stress. Taken together, our findings demonstrate that SlFDH plays a role in Al tolerance and reveal the transcriptional regulatory mechanism of SlFDH expression in response to Al stress in tomato.


Subject(s)
Solanum lycopersicum , Solanum lycopersicum/genetics , NAD/metabolism , Aluminum/toxicity , Aluminum/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , Formates/metabolism , Gene Expression Regulation, Plant , Plant Proteins/genetics , Plant Proteins/metabolism
2.
Planta ; 259(5): 98, 2024 Mar 24.
Article in English | MEDLINE | ID: mdl-38522041

ABSTRACT

MAIN CONCLUSION: A stable genetic transformation system for Erigeron breviscapus was developed. We cloned the EbYUC2 gene and genetically transformed it into Arabidopsis thaliana and E. breviscapus. The leaf number, YUC2 gene expression, and the endogenous auxin content in transgenic plants were significantly increased. Erigeron breviscapus is a prescription drug for the clinical treatment of cardiovascular and cerebrovascular diseases. The rosette leaves have the highest content of the major active compound scutellarin and are an important component in the yield of E. breviscapus. However, little is known about the genes related to the leaf number and flowering time of E. breviscapus. In our previous study, we identified three candidate genes related to the leaf number and flowering of E. breviscapus by combining resequencing data and genome-wide association study (GWAS). However, their specific functions remain to be characterized. In this study, we cloned and transformed the previously identified full-length EbYUC2 gene into Arabidopsis thaliana, developed the first stable genetic transformation system for E. breviscapus, and obtained the transgenic plants overexpressing EbYUC2. Compared with wild-type plants, the transgenic plants showed a significant increase in the number of leaves, which was correlated with the increased expression of EbYUC2. Consistently, the endogenous auxin content, particularly indole-3-acetic acid, in transgenic plants was also significantly increased. These results suggest that EbYUC2 may control the leaf number by regulating auxin biosynthesis, thereby laying a foundation for revealing the molecular mechanism governing the leaf number and flowering time of E. breviscapus.


Subject(s)
Arabidopsis , Erigeron , Erigeron/genetics , Arabidopsis/genetics , Genome-Wide Association Study , Indoleacetic Acids , Plant Leaves/genetics , Plants, Genetically Modified , Transformation, Genetic
3.
J Integr Plant Biol ; 64(9): 1803-1820, 2022 Sep.
Article in English | MEDLINE | ID: mdl-35789105

ABSTRACT

Phosphocholine (PCho) is an intermediate metabolite of nonplastid plant membranes that is essential for salt tolerance. However, how PCho metabolism modulates response to salt stress remains unknown. Here, we characterize the role of phosphoethanolamine N-methyltransferase 1 (PMT1) in salt stress tolerance in Arabidopsis thaliana using a T-DNA insertional mutant, gene-editing alleles, and complemented lines. The pmt1 mutants showed a severe inhibition of root elongation when exposed to salt stress, but exogenous ChoCl or lecithin rescued this defect. pmt1 also displayed altered glycerolipid metabolism under salt stress, suggesting that glycerolipids contribute to salt tolerance. Moreover, pmt1 mutants exhibited altered reactive oxygen species (ROS) accumulation and distribution, reduced cell division activity, and disturbed auxin distribution in the primary root compared with wild-type seedlings. We show that PMT1 expression is induced by salt stress and relies on the abscisic acid (ABA) signaling pathway, as this induction was abolished in the aba2-1 and pyl112458 mutants. However, ABA aggravated the salt sensitivity of the pmt1 mutants by perturbing ROS distribution in the root tip. Taken together, we propose that PMT1 is an important phosphoethanolamine N-methyltransferase participating in root development of primary root elongation under salt stress conditions by balancing ROS production and distribution through ABA signaling.


Subject(s)
Arabidopsis Proteins , Arabidopsis , Abscisic Acid/metabolism , Abscisic Acid/pharmacology , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Ethanolamines , Gene Expression Regulation, Plant , Hexachlorocyclohexane/analogs & derivatives , Methyltransferases/metabolism , Plants, Genetically Modified/genetics , Reactive Oxygen Species/metabolism , Salt Tolerance/genetics , Stress, Physiological
4.
BMC Genomics ; 21(1): 288, 2020 Apr 07.
Article in English | MEDLINE | ID: mdl-32264854

ABSTRACT

BACKGROUND: The family of NAC proteins (NAM, ATAF1/2, and CUC2) represent a class of large plant-specific transcription factors. However, identification and functional surveys of NAC genes of tomato (Solanum lycopersicum) remain unstudied, despite the tomato genome being decoded for several years. This study aims to identify the NAC gene family and investigate their potential roles in responding to Al stress. RESULTS: Ninety-three NAC genes were identified and named in accordance with their chromosome location. Phylogenetic analysis found SlNACs are broadly distributed in 5 groups. Gene expression analysis showed that SlNACs had different expression levels in various tissues and at different fruit development stages. Cycloheximide treatment and qRT-PCR analysis indicated that SlNACs may aid regulation of tomato in response to Al stress, 19 of which were significantly up- or down-regulated in roots of tomato following Al stress. CONCLUSION: This work establishes a knowledge base for further studies on biological functions of SlNACs in tomato and will aid in improving agricultural traits of tomato in the future.


Subject(s)
Aluminum/administration & dosage , Gene Expression Profiling/methods , Solanum lycopersicum/physiology , Transcription Factors/genetics , Whole Genome Sequencing/methods , Chromosome Mapping , Cycloheximide/pharmacology , Gene Expression Regulation, Plant/drug effects , Solanum lycopersicum/drug effects , Solanum lycopersicum/genetics , Multigene Family/drug effects , Phylogeny , Plant Proteins/drug effects , Plant Proteins/genetics , Plant Roots/drug effects , Plant Roots/genetics , Plant Roots/physiology , Stress, Physiological , Transcription Factors/drug effects
5.
New Phytol ; 225(4): 1732-1745, 2020 02.
Article in English | MEDLINE | ID: mdl-31608986

ABSTRACT

The mechanisms involved in the regulation of gene expression in response to phosphate (Pi) deficiency have been extensively studied, but their chromatin-level regulation remains poorly understood. We examined the role of histone acetylation in response to Pi deficiency by using the histone deacetylase complex1 (hdc1) mutant. Genes involved in root system architecture (RSA) remodeling were analyzed by quantitative real-time polymerase chain reaction (qPCR) and chromatin immunoprecipitation qPCR. We demonstrate that histone H3 acetylation increased under Pi deficiency, and the hdc1 mutant was hypersensitive to Pi deficiency, with primary root growth inhibition and increases in root hair number. Concomitantly, Pi deficiency repressed HDC1 protein abundances. Under Pi deficiency, hdc1 accumulated higher concentrations of Fe3+ in the root tips and had higher expression of genes involved in RSA remodeling, such as ALUMINUM-ACTIVATED MALATE TRANSPORTER1 (ALMT1), LOW PHOSPHATE ROOT1 (LPR1), and LPR2 compared with wild-type plants. Furthermore, Pi deficiency enriched the histone H3 acetylation of ALMT1 and LPR1. Finally, genetic evidence showed that LPR1/2 was epistatic to HDC1 in regulating RSA remodeling. Our results suggest a chromatin-level control of Pi starvation responses in which HDC1-mediated histone H3 deacetylation represses the transcriptional activation of genes involved in RSA remodeling in Arabidopsis.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Gene Expression Regulation, Plant/drug effects , Nuclear Proteins/metabolism , Phosphates/pharmacology , Plant Roots/growth & development , Arabidopsis/enzymology , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Plant/physiology , Nuclear Proteins/genetics , Plant Roots/enzymology , Plants, Genetically Modified
6.
Plant Cell Environ ; 43(2): 463-478, 2020 02.
Article in English | MEDLINE | ID: mdl-31713247

ABSTRACT

Transcriptional regulation is important for plants to respond to toxic effects of aluminium (Al). However, our current knowledge to these events is confined to a few transcription factors. Here, we functionally characterized a rice bean (Vigna umbellata) NAC-type transcription factor, VuNAR1, in terms of Al stress response. We demonstrated that rice bean VuNAR1 is a nuclear-localized transcriptional activator, whose expression was specifically upregulated by Al in roots but not in shoot. VuNAR1 overexpressing Arabidopsis plants exhibit improved Al resistance via Al exclusion. However, VuNAR1-mediated Al exclusion is independent of the function of known Al-resistant genes. Comparative transcriptomic analysis revealed that VuNAR1 specifically regulates the expression of genes associated with protein phosphorylation and cell wall modification in Arabidopsis. Transient expression assay demonstrated the direct transcriptional activation of cell wall-associated receptor kinase 1 (WAK1) by VuNAR1. Moreover, yeast one-hybrid assays and MEME motif searches identified a new VuNAR1-specific binding motif in the promoter of WAK1. Compared with wild-type Arabidopsis plants, VuNAR1 overexpressing plants have higher WAK1 expression and less pectin content. Taken together, our results suggest that VuNAR1 regulates Al resistance by regulating cell wall pectin metabolism via directly binding to the promoter of WAK1 and induce its expression.


Subject(s)
Aluminum/pharmacology , Cell Wall/metabolism , Drug Resistance/drug effects , Drug Resistance/physiology , Pectins/metabolism , Protein Kinases/metabolism , Transcription Factors/metabolism , Vigna/metabolism , Arabidopsis/genetics , Arabidopsis Proteins , Gene Expression Regulation, Plant/drug effects , Iron-Sulfur Proteins/genetics , Iron-Sulfur Proteins/metabolism , Membrane Proteins/genetics , Membrane Proteins/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Roots/drug effects , Plant Roots/metabolism , Plants, Genetically Modified , Protein Kinases/genetics , Up-Regulation/drug effects , Vigna/drug effects , Vigna/genetics
7.
BMC Plant Biol ; 19(1): 451, 2019 Oct 26.
Article in English | MEDLINE | ID: mdl-31655543

ABSTRACT

BACKGROUND: Taproot thickening is a complex biological process that is dependent on the coordinated expression of genes controlled by both environmental and developmental factors. Panax notoginseng is an important Chinese medicinal herb that is characterized by an enlarged taproot as the main organ of saponin accumulation. However, the molecular mechanisms of taproot enlargement are poorly understood. RESULTS: A total of 29,957 differentially expressed genes (DEGs) were identified during the thickening process in the taproots of P. notoginseng. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment revealed that DEGs associated with "plant hormone signal transduction," "starch and sucrose metabolism," and "phenylpropanoid biosynthesis" were predominantly enriched. Further analysis identified some critical genes (e.g., RNase-like major storage protein, DA1-related protein, and Starch branching enzyme I) and metabolites (e.g., sucrose, glucose, fructose, malate, and arginine) that potentially control taproot thickening. Several aspects including hormone crosstalk, transcriptional regulation, homeostatic regulation between sugar and starch, and cell wall metabolism, were identified as important for the thickening process in the taproot of P. notoginseng. CONCLUSION: The results provide a molecular regulatory network of taproot thickening in P. notoginseng and facilitate the further characterization of the genes responsible for taproot formation in root medicinal plants or crops.


Subject(s)
Gene Regulatory Networks , Metabolome , Panax notoginseng/genetics , Plant Proteins/metabolism , Signal Transduction , Transcriptome , Gene Expression Regulation, Plant , Panax notoginseng/growth & development , Panax notoginseng/physiology , Plant Proteins/genetics , Plant Roots/genetics , Plant Roots/growth & development , Plant Roots/physiology
8.
J Integr Plant Biol ; 61(2): 140-154, 2019 Feb.
Article in English | MEDLINE | ID: mdl-29975451

ABSTRACT

Under conditions of aluminum (Al) toxicity, which severely inhibits root growth in acidic soils, plants rapidly alter their gene expression to optimize physiological fitness for survival. Abscisic acid (ABA) has been suggested as a mediator between Al stress and gene expression, but the underlying mechanisms remain largely unknown. Here, we investigated ABA-mediated Al-stress responses, using integrated physiological and molecular biology approaches. We demonstrate that Al stress caused ABA accumulation in the root apex of rice bean (Vigna umbellata [Thunb.] Ohwi & Ohashi), which positively regulated Al tolerance. However, this was not associated with known Al-tolerance mechanisms. Transcriptomic analysis revealed that nearly one-third of the responsive genes were shared between the Al-stress and ABA treatments. We further identified a transcription factor, ABI5, as being positively involved in Al tolerance. Arabidopsis abi5 mutants displayed increased sensitivity to Al, which was not related to the regulation of AtALMT1 and AtMATE expression. Functional categorization of ABI5-mediated genes revealed the importance of cell wall modification and osmoregulation in Al tolerance, a finding supported by osmotic stress treatment on Al tolerance. Our results suggest that ABA signal transduction pathways provide an additional layer of regulatory control over Al tolerance in plants.


Subject(s)
Abscisic Acid/metabolism , Arabidopsis/metabolism , Vigna/metabolism , Arabidopsis/genetics , Arabidopsis Proteins , Gene Expression Regulation, Plant/genetics , Gene Expression Regulation, Plant/physiology , Signal Transduction
9.
Planta ; 248(4): 893-907, 2018 Oct.
Article in English | MEDLINE | ID: mdl-29959508

ABSTRACT

MAIN CONCLUSION: An SPL-type transcription factor, LeSPL-CNR, is negatively involved in NO production by modulating SlNR expression and nitrate reductase activity, which contributes to Cd tolerance. Cadmium (Cd) is a highly toxic pollutant. Identifying factors affecting Cd accumulation in plants is a prerequisite for minimizing dietary uptake of Cd from crops grown with contaminated soil. Here, we report the involvement of a SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE (SPL) transcription factor LeSPL-CNR in Cd tolerance in tomato (Solanum lycopersicum). In comparison with the wild-type Ailsa Craig (AC) plants, the Colourless non-ripening (Cnr) epimutant displayed increased Cd accumulation and enhanced sensitivity to Cd, which was in well accordance with the repression of LeSPL-CNR expression. Cd stress-induced NO production was inhibited by nitrate reductase (NR) inhibitor, but not NO synthase-like enzyme inhibitor. Expression of LeSPL-CNR was negatively correlated with SlNR expression and the NR activity. We also demonstrated that LeSPL-CNR inhibited the SlNR promoter activity in vivo and bound to SlNR promoter sequence that does not contain a known SBP-binding motif. In addition, expression of an IRON-REGULATED TRANSPORTER1, SlIRT1, was more abundant in Cnr roots than AC roots under Cd stress. LeSPL-CNR may thus provide a molecular mechanism linking Cd stress response to regulation of NR-dependent NO production, which then contributes to Cd uptake via SlIRT1 expression in tomato.


Subject(s)
Cadmium/metabolism , Nitrate Reductase/metabolism , Nitric Oxide/metabolism , Solanum lycopersicum/genetics , Solanum lycopersicum/metabolism , Cadmium/toxicity , Down-Regulation , Drug Tolerance , Gene Expression Regulation, Plant , Solanum lycopersicum/drug effects , Nitrate Reductase/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Roots/drug effects , Plant Roots/genetics , Plant Roots/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , Two-Hybrid System Techniques
10.
New Phytol ; 219(1): 149-162, 2018 07.
Article in English | MEDLINE | ID: mdl-29658118

ABSTRACT

Whilst WRKY transcription factors are known to be involved in diverse plant responses to biotic stresses, their involvement in abiotic stress tolerance is poorly understood. OsFRDL4, encoding a citrate transporter, has been reported to be regulated by ALUMINUM (Al) RESISTANCE TRANSCRIPTION FACTOR 1 (ART1) in rice, but whether it is also regulated by other transcription factors is unknown. We define the role of OsWRKY22 in response to Al stress in rice by using mutation and transgenic complementation assays, and characterize the regulation of OsFRDL4 by OsWRKY22 via yeas one-hybrid, electrophoretic mobility shift assay and ChIP-quantitative PCR. We demonstrate that loss of OsWRKY22 function conferred by the oswrky22 T-DNA insertion allele causes enhanced sensitivity to Al stress, and a reduction in Al-induced citrate secretion. We next show that OsWRKY22 is localized in the nucleus, functions as a transcriptional activator and is able to bind to the promoter of OsFRDL4 via W-box elements. Finally, we find that both OsFRDL4 expression and Al-induced citrate secretion are significantly lower in art1 oswrky22 double mutants than in the respective single mutants. We conclude that OsWRKY22 promotes Al-induced increases in OsFRDL4 expression, thus enhancing Al-induced citrate secretion and Al tolerance in rice.


Subject(s)
Aluminum/toxicity , Carrier Proteins/metabolism , Citric Acid/metabolism , Oryza/genetics , Transcription Factors/metabolism , Carrier Proteins/genetics , Oryza/physiology , Plant Proteins/genetics , Plant Proteins/metabolism , Plants, Genetically Modified , Promoter Regions, Genetic/genetics , Stress, Physiological , Transcription Factors/genetics
11.
Plant Cell Environ ; 41(4): 809-822, 2018 04.
Article in English | MEDLINE | ID: mdl-29346835

ABSTRACT

Aluminum (Al)-induced organic acid secretion from the root apex is an important Al resistance mechanism. However, it remains unclear how plants fine-tune root organic acid secretion which can contribute significantly to the loss of fixed carbon from the plant. Here, we demonstrate that Al-induced citrate secretion from the rice bean root apex is biphasic, consisting of an early phase with low secretion and a later phase of large citrate secretion. We isolated and characterized VuMATE2 as a possible second citrate transporter in rice bean functioning in tandem with VuMATE1, which we previously identified. The time-dependent kinetics of VuMATE2 expression correlates well with the kinetics of early phase root citrate secretion. Ectopic expression of VuMATE2 in Arabidopsis resulted in increased root citrate secretion and Al resistance. Electrophysiological analysis of Xenopus oocytes expressing VuMATE2 indicated VuMATE2 mediates anion efflux. However, the expression regulation of VuMATE2 differs from VuMATE1. While a protein translation inhibitor suppressed Al-induced VuMATE1 expression, it releases VuMATE2 expression. Yeast one-hybrid assays demonstrated that a previously identified transcription factor, VuSTOP1, interacts with the VuMATE2 promoter at a GGGAGG cis-acting motif. Thus, we demonstrate that plants adapt to Al toxicity by fine-tuning root citrate secretion with two separate root citrate transport systems.


Subject(s)
Aluminum/toxicity , Carrier Proteins/metabolism , Citric Acid/metabolism , Meristem/metabolism , Organic Cation Transport Proteins/metabolism , Plant Proteins/metabolism , Vigna/metabolism , Animals , Animals, Genetically Modified , Arabidopsis , Carrier Proteins/genetics , Gene Expression Profiling , Meristem/drug effects , Oocytes/metabolism , Organic Cation Transport Proteins/genetics , Plant Proteins/genetics , Plants, Genetically Modified , Two-Hybrid System Techniques , Vigna/drug effects , Vigna/genetics , Xenopus laevis
12.
Plant Physiol ; 171(1): 294-305, 2016 05.
Article in English | MEDLINE | ID: mdl-27021188

ABSTRACT

Formate dehydrogenase (FDH) is involved in various higher plant abiotic stress responses. Here, we investigated the role of rice bean (Vigna umbellata) VuFDH in Al and low pH (H(+)) tolerance. Screening of various potential substrates for the VuFDH protein demonstrated that it functions as a formate dehydrogenase. Quantitative reverse transcription-PCR and histochemical analysis showed that the expression of VuFDH is induced in rice bean root tips by Al or H(+) stresses. Fluorescence microscopic observation of VuFDH-GFP in transgenic Arabidopsis plants indicated that VuFDH is localized in the mitochondria. Accumulation of formate is induced by Al and H(+) stress in rice bean root tips, and exogenous application of formate increases internal formate content that results in the inhibition of root elongation and induction of VuFDH expression, suggesting that formate accumulation is involved in both H(+)- and Al-induced root growth inhibition. Over-expression of VuFDH in tobacco (Nicotiana tabacum) results in decreased sensitivity to Al and H(+) stress due to less production of formate in the transgenic tobacco lines under Al and H(+) stresses. Moreover, NtMATE and NtALS3 expression showed no changes versus wild type in these over-expression lines, suggesting that herein known Al-resistant mechanisms are not involved. Thus, the increased Al tolerance of VuFDH over-expression lines is likely attributable to their decreased Al-induced formate production. Taken together, our findings advance understanding of higher plant Al toxicity mechanisms, and suggest a possible new route toward the improvement of plant performance in acidic soils, where Al toxicity and H(+) stress coexist.


Subject(s)
Aluminum/toxicity , Formate Dehydrogenases/metabolism , Plant Proteins/metabolism , Vigna/drug effects , Vigna/genetics , Arabidopsis/drug effects , Arabidopsis/genetics , Cloning, Molecular , Formate Dehydrogenases/genetics , Formates/metabolism , Gene Expression Regulation, Plant , Hydrogen-Ion Concentration , Mitochondrial Proteins/genetics , Mitochondrial Proteins/metabolism , Plant Proteins/genetics , Plant Roots/drug effects , Plant Roots/genetics , Plant Roots/growth & development , Plant Roots/metabolism , Plants, Genetically Modified , Nicotiana/drug effects , Nicotiana/genetics , Vigna/metabolism
13.
Plant Physiol ; 172(3): 1679-1690, 2016 11.
Article in English | MEDLINE | ID: mdl-27650448

ABSTRACT

Acyl Activating Enzyme3 (AAE3) was identified to be involved in the catabolism of oxalate, which is critical for seed development and defense against fungal pathogens. However, the role of AAE3 protein in abiotic stress responses is unknown. Here, we investigated the role of rice bean (Vigna umbellata) VuAAE3 in Al tolerance. Recombinant VuAAE3 protein has specific activity against oxalate, with Km = 121 ± 8.2 µm and Vmax of 7.7 ± 0.88 µmol min-1 mg-1 protein, indicating it functions as an oxalyl-CoA synthetase. VuAAE3-GFP localization suggested that this enzyme is a soluble protein with no specific subcellular localization. Quantitative reverse transcription-PCR and VuAAE3 promoter-GUS reporter analysis showed that the expression induction of VuAAE3 is mainly confined to rice bean root tips. Accumulation of oxalate was induced rapidly by Al stress in rice bean root tips, and exogenous application of oxalate resulted in the inhibition of root elongation and VuAAE3 expression induction, suggesting that oxalate accumulation is involved in Al-induced root growth inhibition. Furthermore, overexpression of VuAAE3 in tobacco (Nicotiana tabacum) resulted in the increase of Al tolerance, which was associated with the decrease of oxalate accumulation. In addition, NtMATE and NtALS3 expression showed no difference between transgenic lines and wild-type plants. Taken together, our results suggest that VuAAE3-dependent turnover of oxalate plays a critical role in Al tolerance mechanisms.


Subject(s)
Adaptation, Physiological/drug effects , Aluminum/toxicity , Coenzyme A Ligases/metabolism , Oxalates/metabolism , Plant Proteins/metabolism , Vigna/enzymology , Amino Acid Sequence , Cell Nucleus/drug effects , Cell Nucleus/metabolism , Cloning, Molecular , Coenzyme A Ligases/chemistry , Gene Expression Regulation, Plant/drug effects , Organ Specificity/genetics , Plant Roots/drug effects , Plant Roots/genetics , Plant Roots/growth & development , Plant Roots/metabolism , Plants, Genetically Modified , Sequence Alignment , Sequence Analysis, Protein , Stress, Physiological/drug effects , Stress, Physiological/genetics , Subcellular Fractions/metabolism , Nicotiana/drug effects , Nicotiana/physiology , Vigna/drug effects , Vigna/genetics , Vigna/metabolism
14.
Int J Mol Sci ; 18(9)2017 Aug 27.
Article in English | MEDLINE | ID: mdl-28846612

ABSTRACT

Being an Al-accumulating crop, buckwheat detoxifies and tolerates Al not only in roots but also in leaves. While much progress has recently been made toward Al toxicity and resistance mechanisms in roots, little is known about the molecular basis responsible for detoxification and tolerance processes in leaves. Here, we carried out transcriptome analysis of buckwheat leaves in response to Al stress (20 µM, 24 h). We obtained 33,931 unigenes with 26,300 unigenes annotated in the NCBI database, and identified 1063 upregulated and 944 downregulated genes under Al stress. Functional category analysis revealed that genes related to protein translation, processing, degradation and metabolism comprised the biological processes most affected by Al, suggesting that buckwheat leaves maintain flexibility under Al stress by rapidly reprogramming their physiology and metabolism. Analysis of genes related to transcription regulation revealed that a large proportion of chromatin-regulation genes are specifically downregulated by Al stress, whereas transcription factor genes are overwhelmingly upregulated. Furthermore, we identified 78 upregulated and 22 downregulated genes that encode transporters. Intriguingly, only a few genes were overlapped with root Al-regulated transporter genes, which include homologs of AtMATE, ALS1, STAR1, ALS3 and a divalent ion symporter. In addition, we identified a subset of genes involved in development, in which genes associated with flowering regulation were important. Based on these data, it is proposed that buckwheat leaves develop conserved and distinct mechanisms to cope with Al toxicity.


Subject(s)
Aluminum/toxicity , Conserved Sequence , Fagopyrum/genetics , Gene Expression Regulation, Plant , Stress, Physiological , Transcriptome , Carrier Proteins/genetics , Carrier Proteins/metabolism , Chromatin/genetics , Chromatin/metabolism , Fagopyrum/drug effects , Fagopyrum/metabolism , Plant Leaves/drug effects , Plant Leaves/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism
15.
Int J Mol Sci ; 17(5)2016 Apr 30.
Article in English | MEDLINE | ID: mdl-27144562

ABSTRACT

Grain amaranth (Amaranthus hypochondriacus L.) is abundant in oxalate and can secrete oxalate under aluminium (Al) stress. However, the features of Al-induced secretion of organic acid anions (OA) and potential genes responsible for OA secretion are poorly understood. Here, Al-induced OA secretion in grain amaranth roots was characterized by ion charomatography and enzymology methods, and suppression subtractive hybridization (SSH) together with quantitative real-time PCR (qRT-PCR) was used to identify up-regulated genes that are potentially involved in OA secretion. The results showed that grain amaranth roots secrete both oxalate and citrate in response to Al stress. The secretion pattern, however, differs between oxalate and citrate. Neither lanthanum chloride (La) nor cadmium chloride (Cd) induced OA secretion. A total of 84 genes were identified as up-regulated by Al, in which six genes were considered as being potentially involved in OA secretion. The expression pattern of a gene belonging to multidrug and toxic compound extrusion (MATE) family, AhMATE1, was in close agreement with that of citrate secretion. The expression of a gene encoding tonoplast dicarboxylate transporter and four genes encoding ATP-binding cassette transporters was differentially regulated by Al stress, but the expression pattern was not correlated well with that of oxalate secretion. Our results not only reveal the secretion pattern of oxalate and citrate from grain amaranth roots under Al stress, but also provide some genetic information that will be useful for further characterization of genes involved in Al toxicity and tolerance mechanisms.


Subject(s)
Aluminum/pharmacology , Amaranthus/drug effects , Carboxylic Acids/metabolism , Plant Proteins/metabolism , Amaranthus/metabolism , Anions/metabolism , Citric Acid/metabolism , Organic Cation Transport Proteins/chemistry , Organic Cation Transport Proteins/genetics , Organic Cation Transport Proteins/metabolism , Oxalates/metabolism , Plant Proteins/chemistry , Plant Proteins/genetics , Plant Roots/drug effects , Plant Roots/metabolism , Real-Time Polymerase Chain Reaction , Up-Regulation/drug effects
16.
New Phytol ; 208(2): 456-68, 2015 Oct.
Article in English | MEDLINE | ID: mdl-25970766

ABSTRACT

The rice bean (Vigna umbellata) root apex specifically secretes citrate through expression activation of Vigna umbellata Multidrug and Toxic Compound Extrusion 1 (VuMATE1) under aluminum (Al(3+) ) stress. However, the underlying mechanisms regulating VuMATE1 expression remain unknown. We isolated and characterized a gene encoding Sensitive to Proton Rhizotoxicity1 (STOP1)-like protein, VuSTOP1, from rice bean. The role of VuSTOP1 in regulating VuMATE1 expression was investigated using the yeast one-hybrid assay. We characterized the function of VuSTOP1 in Al(3)  (+)  - and H(+) -tolerance using in planta complementation assays. We demonstrated that VuSTOP1 has transactivation potential. We found that VuSTOP1 expression is inducible by Al(3+) and H(+) stress. However, although VuSTOP1 binds to the promoter of VuMATE1, the inconsistent tissue localization patterns of VuSTOP1 and VuMATE1 preclude VuSTOP1 as the major factor regulating VuMATE1 expression. In addition, when a protein translation inhibitor increased expression of VuSTOP1, VuMATE1 expression was inhibited. In planta complementation assay demonstrated that VuSTOP1 could fully restore expression of genes involved in H(+) tolerance, but could only partially restore expression of AtMATE. We conclude that VuSTOP1 plays a major role in H(+) tolerance, but only a minor role in Al(3+) tolerance. The differential transcriptional regulation of VuSTOP1 and VuMATE1 reveals a complex regulatory system controlling VuMATE1 expression.


Subject(s)
Adaptation, Physiological/drug effects , Aluminum/toxicity , Fabaceae/physiology , Plant Proteins/metabolism , Transcription Factors/metabolism , Zinc Fingers , Amino Acid Sequence , Arabidopsis/physiology , Base Sequence , Cloning, Molecular , Cycloheximide/pharmacology , Fabaceae/drug effects , Fabaceae/genetics , Fabaceae/growth & development , Gene Expression Regulation, Plant , Genetic Complementation Test , Glucuronidase/metabolism , Hydrogen-Ion Concentration , Models, Biological , Mutation/genetics , Plant Proteins/chemistry , Plant Proteins/genetics , Plants, Genetically Modified , Protons , RNA, Messenger/genetics , RNA, Messenger/metabolism , Real-Time Polymerase Chain Reaction , Sequence Alignment , Subcellular Fractions/metabolism , Transcription Factors/chemistry , Transcription Factors/genetics , Transcriptional Activation , Two-Hybrid System Techniques
17.
Plant Cell ; 24(11): 4731-47, 2012 Nov.
Article in English | MEDLINE | ID: mdl-23204407

ABSTRACT

Xyloglucan endohydrolase (XEH) and xyloglucan endotransglucosylase (XET) activities, encoded by xyloglucan endotransglucosylase-hydrolase (XTH) genes, are involved in cell wall extension by cutting or cutting and rejoining xyloglucan chains, respectively. However, the physiological significance of this biochemical activity remains incompletely understood. Here, we find that an XTH31 T-DNA insertion mutant, xth31, is more Al resistant than the wild type. XTH31 is bound to the plasma membrane and the encoding gene is expressed in the root elongation zone and in nascent leaves, suggesting a role in cell expansion. XTH31 transcript accumulation is strongly downregulated by Al treatment. XTH31 expression in yeast yields a protein with an in vitro XEH:XET activity ratio of >5000:1. xth31 accumulates significantly less Al in the root apex and cell wall, shows remarkably lower in vivo XET action and extractable XET activity, has a lower xyloglucan content, and exhibits slower elongation. An exogenous supply of xyloglucan significantly ameliorates Al toxicity by reducing Al accumulation in the roots, owing to the formation of an Al-xyloglucan complex in the medium, as verified by an obvious change in chemical shift of (27)Al-NMR. Taken together, the data indicate that XTH31 affects Al sensitivity by modulating cell wall xyloglucan content and Al binding capacity.


Subject(s)
Aluminum/toxicity , Arabidopsis Proteins/metabolism , Arabidopsis/enzymology , Gene Expression Regulation, Enzymologic , Glucans/metabolism , Xylans/metabolism , Amino Acid Sequence , Arabidopsis/chemistry , Arabidopsis/drug effects , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Cell Wall/metabolism , Chelating Agents/analysis , Chelating Agents/metabolism , Down-Regulation , Gene Expression Regulation, Plant , Glucans/analysis , Glycosyltransferases/genetics , Glycosyltransferases/metabolism , Mutagenesis, Insertional , Organ Specificity , Phenotype , Phylogeny , Plant Leaves/chemistry , Plant Leaves/drug effects , Plant Leaves/enzymology , Plant Leaves/genetics , Plant Roots/chemistry , Plant Roots/drug effects , Plant Roots/enzymology , Plant Roots/genetics , Plants, Genetically Modified , Polysaccharides/analysis , Polysaccharides/metabolism , Recombinant Fusion Proteins , Seedlings/chemistry , Seedlings/drug effects , Seedlings/enzymology , Seedlings/genetics , Sequence Analysis, DNA , Xylans/analysis
18.
J Clin Psychopharmacol ; 35(4): 406-10, 2015 Aug.
Article in English | MEDLINE | ID: mdl-26066335

ABSTRACT

Major depressive disorder is a devastating mental illness leading to a lifetime prevalence of higher than 16% on individuals. The treatment delay and inevitable adverse effects are major limitations of current depression interventions. Emerging evidence indicates that curcumin produced significant antidepressant properties in depression in both rodents and humans without adverse effects. Therefore, it is necessary to further clarify the antidepressant actions of curcumin and the underlying mechanism in depressed patients. A total of 108 male adults aged between 31 and 59 years were systematically recruited in Tianjin Anding Hospital. Subjects were administered the Chinese version of 17-item Hamilton Depression Rating Scale and Montgomery-Asberg Depression Rating Scale that measures different scores of depressive symptoms. The subjects were asked to take 2 capsules containing either 1000 mg of curcumin or placebo soybean powder daily for 6 weeks on the basis of their current antidepressant medications. The plasma levels of interleukin 1ß, tumor necrosis factor α, brain-derived neurotrophic factor, and salivary cortisol were measured by enzyme-linked immunosorbent assay before and after curcumin or placebo treatment during the 6-week procedure. Chronic supplementation with curcumin produced significant antidepressant behavioral response in depressed patients by reduction of 17-item Hamilton Depression Rating Scale and Montgomery-Asberg Depression Rating Scale scores. Furthermore, curcumin decreases inflammatory cytokines interleukin 1ß and tumor necrosis factor α level, increases plasma brain-derived neurotrophic factor levels, and decreases salivary cortisol concentrations compared with placebo group. These findings indicate the potential benefits of further implications of supplementary administration of curcumin to reverse the development of depression and enhance the outcome of antidepressants treatment in major depressive disorder.


Subject(s)
Antidepressive Agents/administration & dosage , Citalopram/administration & dosage , Curcumin/administration & dosage , Depressive Disorder, Major/diagnosis , Depressive Disorder, Major/drug therapy , Dietary Supplements , Adult , Brain-Derived Neurotrophic Factor/blood , Depressive Disorder, Major/blood , Double-Blind Method , Humans , Hydrocortisone/antagonists & inhibitors , Hydrocortisone/blood , Inflammation Mediators/antagonists & inhibitors , Inflammation Mediators/blood , Male , Middle Aged , Pilot Projects , Treatment Outcome
19.
Heliyon ; 10(1): e23748, 2024 Jan 15.
Article in English | MEDLINE | ID: mdl-38205315

ABSTRACT

Objective: Post-traumatic stress disorder (PTSD) is a neuropsychiatric disorder that can develop after experiencing or witnessing a traumatic event. Exposure therapy is a common treatment for PTSD, but it has varying levels of efficacy depending on sex. In this study, we aimed to compare the sexual dimorphism in brain activation during the extinction of fear conditioning in male and female rats by detecting the c-fos levels in the whole brain. Methods: Thirty-two rats (Male: n = 16; Female: n = 16) were randomly separated into the extinction group as well as the non-extinction group, and fear conditioning was followed by extinction and non-extinction, respectively. Subsequently, brain sections from the sacrificed animal were performed immunofluorescence and the collected data were analyzed by repeated two-way ANOVAs as well as Pearson Correlation Coefficient. Results: Our findings showed that most brain areas activated during extinction were similar in both male and female rats, except for the reuniens thalamic nucleus and ventral hippocampi. Furthermore, we found differences in the correlation between c-fos activation levels and freezing behavior during extinction between male and female rats. Specifically, in male rats, c-fos activation in the anterior cingulate cortex was negatively correlated with the freezing level, while c-fos activation in the retrosplenial granular cortex was positively correlated with the freezing level; but in female rats did not exhibit any correlation between c-fos activation and freezing level. Finally, the functional connectivity analysis revealed differences in the neural networks involved in extinction learning between male and female rats. In male rats, the infralimbic cortex and insular cortex, anterior cingulate cortex and retrosplenial granular cortex, and dorsal dentate gyrus and dCA3 were strongly correlated after extinction. In female rats, prelimbic cortex and basolateral amygdala, insular cortex and dCA3, and anterior cingulate cortex and dCA1 were significantly correlated. Conclusion: These results suggest divergent neural networks involved in extinction learning in male and female rats and provide a clue for improving the clinical treatment of exposure therapy based on the sexual difference.

20.
Front Psychol ; 15: 1384053, 2024.
Article in English | MEDLINE | ID: mdl-38863669

ABSTRACT

Background: Depression is one of the primary global public health issues, and there has been a dramatic increase in depression levels among young people over the past decade. The neuroplasticity theory of depression postulates that a malfunction in neural plasticity, which is responsible for learning, memory, and adaptive behavior, is the primary source of the disorder's clinical manifestations. Nevertheless, the impact of depression symptoms on associative learning remains underexplored. Methods: We used the differential fear conditioning paradigm to investigate the effects of depressive symptoms on fear acquisition and extinction learning. Skin conductance response (SCR) is an objective evaluation indicator, and ratings of nervousness, likeability, and unconditioned stimuli (US) expectancy are subjective evaluation indicators. In addition, we used associability generated by a computational reinforcement learning model to characterize the skin conductance response. Results: The findings indicate that individuals with depressive symptoms exhibited significant impairment in fear acquisition learning compared to those without depressive symptoms based on the results of the skin conductance response. Moreover, in the discrimination fear learning task, the skin conductance response was positively correlated with associability, as estimated by the hybrid model in the group without depressive symptoms. Additionally, the likeability rating scores improved post-extinction learning in the group without depressive symptoms, and no such increase was observed in the group with depressive symptoms. Conclusion: The study highlights that individuals with pronounced depressive symptoms exhibit impaired fear acquisition and extinction learning, suggesting a possible deficit in associative learning. Employing the hybrid model to analyze the learning process offers a deeper insight into the associative learning processes of humans, thus allowing for improved comprehension and treatment of these mental health problems.

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