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1.
Chemistry ; 29(63): e202302334, 2023 Nov 13.
Article in English | MEDLINE | ID: mdl-37650376

ABSTRACT

Lithium-sulfur batteries are believed to possess the feasibility to power electric vehicles in the future ascribed to the competitive energy density. However, soluble polysulfides continuously shuttle between the sulfur electrode and lithium anode across the separator, which dramatically impairs the battery's capacity. Herein, the surface of a polypropylene separator (PP film) is successfully modified with a delicately designed cation-selective polymer layer to suppress the transport of polysulfides. In principle, since bis-sulfonimide anions groups on the backbone of the polymer are immobilized, only cations can pass through the polymer layer. Furthermore, plenty of ethoxy chains in the polymer can facilitate lithium-ion mobility. Consequently, in addition to obstructing the movement of negatively charged polysulfides by the electrostatic repulsive force of fixed anions, the coated multi-functional layer on the PP film also guarantees the smooth conduction of lithium ions. The investigations demonstrate that the battery with the pristine PP film only delivers 228.5 mAh g-1 after 300 cycles at 2 C with a high capacity fading rate of 60.9 %. By contrast, the polymer-coated sample can release 409.4 mAh g-1 under the identical test condition and the capacity fading rate sharply declines to 43.2 %, illustrating superior cycle performance.

2.
Zhongguo Dang Dai Er Ke Za Zhi ; 25(2): 153-158, 2023 Feb 15.
Article in Zh | MEDLINE | ID: mdl-36854691

ABSTRACT

OBJECTIVES: To study the association between early-life factors (including birth weight, method of birth, gestational age, and history of gestational metabolic disorders) and pubertal timing in girls. METHODS: The stratified cluster sampling method was used to select the girls in grades 2-3 and 7-8 from three primary schools and three middle schools in Guangzhou, China from March to December, 2019, and breast development was examined for all girls. A questionnaire survey was performed to collect the information on early-life factors. The multivariate logistic regression model was used to evaluate the association of gestational metabolic disorders, birth weight, method of birth, and gestational age with pubertal timing in girls. The Bootstrap method was used to assess the mediation effect of body mass index (BMI) (Z score) between high birth weight (≥4 000 g) and pubertal timing. RESULTS: A total of 1 665 girls were enrolled, among whom 280 (16.82%) were judged to have early pubertal timing. The multivariate logistic regression analysis showed that high birth weight was associated with the increased risk of early pubertal timing (OR=2.12, 95%CI: 1.19-3.66, P=0.008). Nevertheless, no significant association was observed between other early-life factors and pubertal timing (P>0.05). The OR for the mediation effect of BMI (Z score) between high birth weight and early pubertal timing was 1.25 (95%CI: 1.09-1.47), accounting for 29.33% of the total effect of high birth weight on early pubertal timing. CONCLUSIONS: High birth weight is associated with the increased risk of early pubertal timing in girls, and overweight/obesity may play a partial mediating role in the association between high birth weight and early pubertal timing in girls.


Subject(s)
Puberty, Precocious , Female , Humans , Birth Weight , Body Mass Index , China , Gestational Age , Logistic Models
3.
Inorg Chem ; 61(24): 9318-9327, 2022 Jun 20.
Article in English | MEDLINE | ID: mdl-35675572

ABSTRACT

Rational design and fabrication of efficient and low-cost catalysts for both the hydrogen evolution reaction (HER) and oxygen evolution reaction (OER) are crucial for hydrogen production from water electrolysis. Herein, we report heteroatom Fe-incorporated Ni5P4 (Fe-NiP) as an excellent bifunctional catalyst for overall water splitting. Density functional theory (DFT) calculations reveal that heteroatom Fe effectively steers the electronic structure of Ni5P4, which optimizes the hydrogen adsorption behavior. Additionally, the hierarchical conductive framework of Fe-NiP contributes to abundant active sites. Thus, the Fe-NiP catalyst shows robust performance with enhanced intrinsic catalytic activity. As a good bifunctional catalyst, it demands low overpotentials of 144 and 223 mV to deliver a current density of 10 mA cm-2 for HER and OER, respectively. Considering the good bifunctional activity, an outstanding electrolyzer has been successfully assembled, which is superior to the benchmark of a RuO2(+)//Pt/C(-) electrolyzer. This study sheds light on steering the electronic structure of electrocatalysts through a heteroatom modulation strategy.

4.
Nanotechnology ; 33(28)2022 Apr 22.
Article in English | MEDLINE | ID: mdl-35385836

ABSTRACT

Despite the demonstrated high-efficiency of solar cells and light-emitting devices based on two-dimensional (2D) perovskites, intrinsic stability of the 2D perovskites is yet far from satisfactory. In this work, we find the 2D (BA)2PbI4perovskite crystals rapidly degrade in the ambient conditions and the photoluminescence (PL) nearly completely quenches in 6 d. Moreover, the PL shoulder band due to defects and absorption band of PbI2gradually rise during degradation, suggesting the precipitation of PbI2. Besides, rod structures are observed in the degraded crystals, which are attributed to the formation of one-dimensional (1D) (BA)3PbI5perovskites. And the degradation can be largely retarded by decreasing the humidity during storage. Therefore, a chemical reaction for the degradation of (BA)2PbI4is proposed, revealing the interactions between water molecules and undercoordinated defects are very critical for understanding the degradation. Enlightened by these findings, dimethyl itaconate (DI) treatment is developed to passivate the defects and block the intrusion of moisture to improve the stability of the (BA)2PbI4. After storage in the ambient environment for 16 d, the DI treated (BA)2PbI4only shows a slight surface degradation without formation of any nanorod-like structures, and the PL intensity retains about 70%. Therefore, our systematic study provides a comprehensive understanding on the degradation dynamics of 2D perovskites, which will promote future development of intrinsically stable 2D perovskites.

5.
Environ Geochem Health ; 44(3): 911-924, 2022 Mar.
Article in English | MEDLINE | ID: mdl-34117975

ABSTRACT

Steroid estrogens have received worldwide attention and given rise to great challenges of aquatic ecosystems security, posing potential adverse effects on aquatic organisms and human health even at low levels (ng/L). The present study focused on understanding the mobility and abiotic transformation of estrone (E1) and estrone-3-sulfate (E1-3S) over spatial and time scales during soil transport. Column transport experiments showed that the migration capacity of E1-3S was far stronger than E1 in soil. The calculated groundwater ubiquity score and leachability index values also indicated the high leaching mobility of E1-3S. The hydrolysis of E1-3S and abiotic transformation into estradiol and estriol was observed in the sterilized soil. Furthermore, possible transformation products (e.g., SE239, E2378, E1 dimer538, E1-E2 dimer541) of E1 and E1-3S in soil were analyzed and identified after the column transport experiments. The estrogenic activity was estimated by 17ß-estradiol equivalency values during the transport process in aqueous and soil phases. Additionally, the potential leaching transport to groundwater of E1-3S requires further critical concern.


Subject(s)
Estrone , Soil Pollutants , Ecosystem , Estradiol , Estrogens , Estrone/analogs & derivatives , Humans , Soil , Soil Pollutants/analysis
6.
Mol Carcinog ; 60(3): 179-187, 2021 03.
Article in English | MEDLINE | ID: mdl-33434300

ABSTRACT

Esophageal squamous cell carcinoma (ESCC) is recognized as one of the malignant tumors with poor prognosis. UAP1L1 (UDP-N-acetylglucosamine-1-like-1) affects numerous biological processes, which is a key regulator of the development of malignant tumors. The biological function and molecular mechanism of UAP1L1 in ESCC were explored in this study. The relationship between UAP1L1 and ESCC was analyzed by immunohistochemical staining, revealing the high expression of UAP1L1 in ESCC. Importantly, the increased expression of UAP1L1 indicated the deterioration of patients' condition, which has clinical significance. Furthermore, the loss-of-function assays demonstrated that knockdown of UAP1L1 inhibited the progression of ESCC on suppressing proliferation, hindering migration, and enhancing apoptosis in vitro. Moreover, the apoptosis of ESCC cells was induced by knockdown of UAP1L1 via regulating a variety of apoptosis-related proteins, such as upregulation of Bax, CD40, CD40L, Fas, FasL, IGFBP-6, p21, p27, p53, and SMAC. Additionally, further investigation indicated that UAP1L1 by affecting the PI3K/Akt, CCND1, and MAPK promotes the progression of ESCC. In vivo xenograft model further confirmed that knockdown of UAP1L1 inhibited the development of ESCC. In conclusion, UAP1L1 was involved in the development and progression of ESCC, which may provide a powerful target for future molecular therapies.


Subject(s)
Esophageal Neoplasms/pathology , Esophageal Squamous Cell Carcinoma/pathology , Nucleotidyltransferases/genetics , Aged , Animals , Apoptosis/genetics , Cell Line, Tumor , Cell Movement/genetics , Cell Proliferation/genetics , Esophageal Neoplasms/genetics , Esophageal Squamous Cell Carcinoma/genetics , Female , Gene Expression Regulation, Neoplastic , Gene Silencing , Humans , Male , Mice, Nude , Middle Aged , Nucleotidyltransferases/metabolism , Up-Regulation , Xenograft Model Antitumor Assays
7.
J Environ Manage ; 287: 112339, 2021 Jun 01.
Article in English | MEDLINE | ID: mdl-33735682

ABSTRACT

The impact of ecological compensation policies on farmers' livelihoods is related to the sustainability of policies and social equity. How do different compensation methods affect farmers' livelihood assets? This paper uses China's Three-River-Source National Park System Pilot Area (TNP) as the research area, and designs three compensation scenarios: cash subsidy, material supply, and technical training. We evaluated the impact of different compensation methods on the livelihood assets of farmers, and reveals the impact path of ecological compensation on different livelihood assets. The results show that cash subsidies can effectively improve the livelihood assets of farmers (17.04%), the five types of livelihood capital distribution are most reasonable under technical training method (0.306); Three compensation methods have improved the human assets of rural households (40.48%, 18.57%, and 0.48% respectively) and physical assets (30.15%, 26.84%, and 9.56% respectively). It also show different effects on farmers' financial assets (44.00%, -11.43%, and 1.14%) and social assets (19.15%, -17.02%, and 10.64%, respectively). Ecological compensation reduced farmers' natural assets (32.89%), but all three compensation methods stimulated farmers to improve their education levels (59.06%, 0.79%, and 7.87%, respectively), which affected farmers' human assets; The improvement of means of production (41.54%, 50.00% and 7.69% respectively) and the family living conditions (75.00%, 25.00% and 75.00% respectively) affect the physical assets of farmers; Changes in natural assets, human assets, and physical assets affect the financial assets of farmers, while social assets is affected by financial assets and human assets.


Subject(s)
Agriculture , Farmers , Family Characteristics , Humans , Research Design , Rural Population
8.
J Cell Mol Med ; 24(7): 4023-4035, 2020 04.
Article in English | MEDLINE | ID: mdl-32096914

ABSTRACT

As a main part of pigmentation disorders, skin depigmentation diseases such as vitiligo and achromic naevus are very common and get more attention now. The pathogenesis of depigmentation includes melanocyte dysfunction and loss, which are possibly caused by heredity, autoimmunity and oxidative stress. Among them, oxidative stress plays a key role; however, few clinical treatments can deal with oxidative stress. As reported, Cistanche deserticola polysaccharide (CDP) is an effective antioxidant; based on that, we evaluated its role in melanocyte and further revealed the mechanisms. In this study, we found that CDP could promote melanogenesis in human epidermal melanocytes (HEMs) and mouse melanoma B16F10 cells, it also induced pigmentation in zebrafish. Furthermore, CDP could activate mitogen-activated protein kinase (MAPK) signal pathway, then up-regulated the expression of microphthalmia-associated transcription factor (MITF) and downstream genes TYR, TRP1, TRP2 and RAB27A. Otherwise, we found that CDP could attenuate H2 O2 -induced cytotoxicity and apoptosis in melanocytes. Further evidence revealed that CDP could enhance NRF2/HO-1 antioxidant pathway and scavenge intracellular ROS. In summary, CDP can promote melanogenesis and prevent melanocytes from oxidative stress injury, suggesting that CDP helps maintain the normal status of melanocytes. Thus, CDP may be a novel drug for the treatment of depigmentation diseases.


Subject(s)
Cistanche/chemistry , Heme Oxygenase-1/genetics , Melanins/genetics , Membrane Proteins/genetics , NF-E2-Related Factor 2/genetics , Polysaccharides/pharmacology , Animals , Humans , Melanins/antagonists & inhibitors , Melanins/biosynthesis , Melanocytes/drug effects , Melanoma, Experimental/drug therapy , Melanoma, Experimental/genetics , Melanoma, Experimental/pathology , Mice , Oxidative Stress/drug effects , Pigmentation/drug effects , Pigmentation/genetics , Pigmentation Disorders/drug therapy , Pigmentation Disorders/genetics , Pigmentation Disorders/pathology , Polysaccharides/chemistry , Zebrafish/genetics
9.
Inorg Chem ; 59(12): 8127-8133, 2020 Jun 15.
Article in English | MEDLINE | ID: mdl-32484663

ABSTRACT

The magnetic properties of the spin-5/2 double molybdate LiFe(MoO4)2 have been characterized by heat capacity, magnetic susceptibility, and neutron powder diffraction techniques. Unlike the multiferroic system LiFe(WO4)2 which exhibits two successive magnetic transitions, LiFe(MoO4)2 undergoes only one antiferromagnetic transition at TN ∼ 23.8 K. Its antiferromagnetic magnetic structure with the commensurate propagation vector k = (0, 0.5, 0) has been determined. Density functional theory calculations confirm the antiferromagnetic ground state and provide a numerical estimate of the relevant exchange coupling constants.

10.
Molecules ; 25(5)2020 Mar 04.
Article in English | MEDLINE | ID: mdl-32143454

ABSTRACT

Despite intensive efforts, the fluorescence of perovskite nanocrystals (NCs) still suffers from a poor color purity, which limits the applications in light emitting and multicolor display. A deep understanding on the fundamental of the photoluminescent (PL) spectral broadening is thus of great significance. Herein, the PL decay curves of the CsPbClxBr3-x NCs are monitored at different wavelengths covering the entire PL band. Moreover, energy relaxation time τ and radiative recombination time ß are obtained by numerical fittings. The dependences of τ and 1/ß on the detection wavelength agree well with the steady-state PL spectrum, indicating the observed PL broadening is an intrinsic effect due to the resonance and off-resonance exciton radiative recombination processes. This work not only provides a new analysis method for time-resolved PL spectra of perovskites, but also gains a deep insight into the spectral broadening of the lead halide perovskite NCs.


Subject(s)
Calcium Compounds/chemistry , Nanoparticles/chemistry , Oxides/chemistry , Titanium/chemistry , Fluorescence
11.
Inorg Chem ; 58(1): 199-203, 2019 Jan 07.
Article in English | MEDLINE | ID: mdl-30525526

ABSTRACT

Two novel metal-organic frameworks (MOFs), HBNU-1 and HBNU-2, have been synthesized successfully. We adopt a step-by-step assembly strategy, which first synthesize the Cu3 cluster Cu3(µ3-OH)(pz)3(CH3COO)2(Hpz), and then react it with H2BDC under different conditions to form final frameworks. In both MOF structures, the Cu3 clusters are maintained, although certain differences are observed. Compared with HBNU-1, the Cu3 cluster dimerizes into Cu6 cluster in HBNU-2. With this step-by-step cluster assembly strategy, MOF structure predicting becomes possible and may give some reference for MOF structure designing.

12.
Nanotechnology ; 29(15): 155401, 2018 Apr 02.
Article in English | MEDLINE | ID: mdl-29372889

ABSTRACT

We report the design, fabrication and characterization of novel TiO2 nanotube photonic crystals with a crystalline core/disordered shell structure as well as substantial oxygen vacancies for photoelectrochemical (PEC) water splitting. The novel TiO2 nanotube photonic crystals are fabricated by annealing of anodized TiO2 nanotube photonic crystals in hydrogen atmosphere at various temperatures. The optimized novel TiO2 nanotube photonic crystals produce a maximal photocurrent density of 2.2 mA cm-2 at 0.22 V versus Ag/AgCl, which is two times higher that of the TiO2 nanotube photonic crystals annealed in air. Such significant PEC performance improvement can be ascribed to synergistic effects of the disordered surface layer and oxygen vacancies. The reduced band gap owing to the disordered surface layer and localized states induced by oxygen vacancies can enhance the efficient utilization of visible light. In addition, the disordered surface layer and substantial oxygen vacancies can promote the efficiency for separation and transport of the photogenerated carriers. This work may open up new opportunities for the design and construction of the high efficient and low-cost PEC water splitting system.

13.
J Environ Manage ; 211: 306-312, 2018 Apr 01.
Article in English | MEDLINE | ID: mdl-29408080

ABSTRACT

Eco-compensation is a type of institutional arrangement that uses economic measures to adjust the relationships among stakeholders in order to conserve and/or sustainably use ecosystem services. The externality of the value of ecosystem services is one of the theoretical bases for eco-compensation. Different types of ecosystem services are consumed by people from different regions. Some are consumed by people living where the services originate, while some are carried by rivers, wind, vehicles or other natural or manmade means to other areas. Thus, the flow and consumption of ecosystem services should be seen as the basis for establishing eco-compensation funds. This paper uses satellite images of the Zhang-Cheng area near Beijing in 2013 to discuss how to establish an eco-compensation fund for stakeholders in this area. Firstly, six important types of ecosystem services in the Zhang-Cheng area were identified based on ecological function zoning, and the value of these ecosystem services was calculated based on ecological pricing methods. Secondly, the field intensity model from physics was used to analyze where Zhang-Cheng area ecosystem services flowed and calculate how much of these services were used by other areas. Thirdly, based on this analysis and calculation, the paper proposes the rates that different stakeholders should invest in the eco-compensation fund, based on their consumption of eco-services.


Subject(s)
Conservation of Natural Resources/economics , Ecosystem , Beijing , Ecology , Financial Management
14.
Nucleic Acids Res ; 42(4): 2159-70, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24311563

ABSTRACT

Programmed self-assembly of DNA enables the rational design of megadalton-scale macromolecular assemblies with sub-nanometer scale precision. These assemblies can be programmed to serve as structural scaffolds for secondary chromophore molecules with light-harvesting properties. Like in natural systems, the local and global spatial organization of these synthetic scaffolded chromophore systems plays a crucial role in their emergent excitonic and optical properties. Previously, we introduced a computational model to predict the large-scale 3D solution structure and flexibility of nucleic acid nanostructures programmed using the principle of scaffolded DNA origami. Here, we use Förster resonance energy transfer theory to simulate the temporal dynamics of dye excitation and energy transfer accounting both for overall DNA nanostructure architecture as well as atomic-level DNA and dye chemical structure and composition. Results are used to calculate emergent optical properties including effective absorption cross-section, absorption and emission spectra and total power transferred to a biomimetic reaction center in an existing seven-helix double stranded DNA-based antenna. This structure-based computational framework enables the efficient in silico evaluation of nucleic acid nanostructures for diverse light-harvesting and photonic applications.


Subject(s)
DNA/chemistry , Light , Models, Molecular , Nanostructures/chemistry , Finite Element Analysis , Fluorescence Resonance Energy Transfer , Fluorescent Dyes/chemistry , Nucleic Acid Conformation , Photons
15.
Nucleic Acids Res ; 42(Web Server issue): W46-52, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24875476

ABSTRACT

Drug-drug interactions (DDIs) may cause serious side-effects that draw great attention from both academia and industry. Since some DDIs are mediated by unexpected drug-human protein interactions, it is reasonable to analyze the chemical-protein interactome (CPI) profiles of the drugs to predict their DDIs. Here we introduce the DDI-CPI server, which can make real-time DDI predictions based only on molecular structure. When the user submits a molecule, the server will dock user's molecule across 611 human proteins, generating a CPI profile that can be used as a feature vector for the pre-constructed prediction model. It can suggest potential DDIs between the user's molecule and our library of 2515 drug molecules. In cross-validation and independent validation, the server achieved an AUC greater than 0.85. Additionally, by investigating the CPI profiles of predicted DDI, users can explore the PK/PD proteins that might be involved in a particular DDI. A 3D visualization of the drug-protein interaction will be provided as well. The DDI-CPI is freely accessible at http://cpi.bio-x.cn/ddi/.


Subject(s)
Drug Design , Proteins/chemistry , Software , Humans , Internet , Molecular Docking Simulation , Pharmaceutical Preparations/chemistry , Proteins/drug effects , Sertraline/chemistry
16.
Proc Natl Acad Sci U S A ; 109(25): 9959-64, 2012 Jun 19.
Article in English | MEDLINE | ID: mdl-22645359

ABSTRACT

Idiosyncratic adverse drug reactions are unpredictable, dose-independent and potentially life threatening; this makes them a major factor contributing to the cost and uncertainty of drug development. Clinical data suggest that many such reactions involve immune mechanisms, and genetic association studies have identified strong linkages between drug hypersensitivity reactions to several drugs and specific HLA alleles. One of the strongest such genetic associations found has been for the antiviral drug abacavir, which causes severe adverse reactions exclusively in patients expressing the HLA molecular variant B*57:01. Abacavir adverse reactions were recently shown to be driven by drug-specific activation of cytokine-producing, cytotoxic CD8(+) T cells that required HLA-B*57:01 molecules for their function; however, the mechanism by which abacavir induces this pathologic T-cell response remains unclear. Here we show that abacavir can bind within the F pocket of the peptide-binding groove of HLA-B*57:01, thereby altering its specificity. This provides an explanation for HLA-linked idiosyncratic adverse drug reactions, namely that drugs can alter the repertoire of self-peptides presented to T cells, thus causing the equivalent of an alloreactive T-cell response. Indeed, we identified specific self-peptides that are presented only in the presence of abacavir and that were recognized by T cells of hypersensitive patients. The assays that we have established can be applied to test additional compounds with suspected HLA-linked hypersensitivities in vitro. Where successful, these assays could speed up the discovery and mechanistic understanding of HLA-linked hypersensitivities, and guide the development of safer drugs.


Subject(s)
Drug Hypersensitivity , Major Histocompatibility Complex , Peptides/chemistry , Amino Acid Sequence , Crystallography, X-Ray , Enzyme-Linked Immunosorbent Assay , Models, Molecular
17.
PLoS Comput Biol ; 9(3): e1002998, 2013.
Article in English | MEDLINE | ID: mdl-23555229

ABSTRACT

Identifying drug-drug interactions (DDIs) is a major challenge in drug development. Previous attempts have established formal approaches for pharmacokinetic (PK) DDIs, but there is not a feasible solution for pharmacodynamic (PD) DDIs because the endpoint is often a serious adverse event rather than a measurable change in drug concentration. Here, we developed a metric "S-score" that measures the strength of network connection between drug targets to predict PD DDIs. Utilizing known PD DDIs as golden standard positives (GSPs), we observed a significant correlation between S-score and the likelihood a PD DDI occurs. Our prediction was robust and surpassed existing methods as validated by two independent GSPs. Analysis of clinical side effect data suggested that the drugs having predicted DDIs have similar side effects. We further incorporated this clinical side effects evidence with S-score to increase the prediction specificity and sensitivity through a Bayesian probabilistic model. We have predicted 9,626 potential PD DDIs at the accuracy of 82% and the recall of 62%. Importantly, our algorithm provided opportunities for better understanding the potential molecular mechanisms or physiological effects underlying DDIs, as illustrated by the case studies.


Subject(s)
Computational Biology/methods , Drug Interactions , Models, Chemical , Pharmaceutical Preparations/chemistry , Pharmacology/methods , Protein Interaction Maps , Algorithms , Bayes Theorem , Databases, Protein , Humans , Models, Statistical , Pharmacokinetics
18.
PLoS Comput Biol ; 9(11): e1003315, 2013.
Article in English | MEDLINE | ID: mdl-24244130

ABSTRACT

Small drug molecules usually bind to multiple protein targets or even unintended off-targets. Such drug promiscuity has often led to unwanted or unexplained drug reactions, resulting in side effects or drug repositioning opportunities. So it is always an important issue in pharmacology to identify potential drug-target interactions (DTI). However, DTI discovery by experiment remains a challenging task, due to high expense of time and resources. Many computational methods are therefore developed to predict DTI with high throughput biological and clinical data. Here, we initiatively demonstrate that the on-target and off-target effects could be characterized by drug-induced in vitro genomic expression changes, e.g. the data in Connectivity Map (CMap). Thus, unknown ligands of a certain target can be found from the compounds showing high gene-expression similarity to the known ligands. Then to clarify the detailed practice of CMap based DTI prediction, we objectively evaluate how well each target is characterized by CMap. The results suggest that (1) some targets are better characterized than others, so the prediction models specific to these well characterized targets would be more accurate and reliable; (2) in some cases, a family of ligands for the same target tend to interact with common off-targets, which may help increase the efficiency of DTI discovery and explain the mechanisms of complicated drug actions. In the present study, CMap expression similarity is proposed as a novel indicator of drug-target interactions. The detailed strategies of improving data quality by decreasing the batch effect and building prediction models are also effectively established. We believe the success in CMap can be further translated into other public and commercial data of genomic expression, thus increasing research productivity towards valid drug repositioning and minimal side effects.


Subject(s)
Drug Repositioning/methods , Gene Expression/drug effects , Genomics/methods , Pharmacology/methods , Ligands , Pharmaceutical Preparations
19.
PLoS Comput Biol ; 9(10): e1003253, 2013.
Article in English | MEDLINE | ID: mdl-24098102

ABSTRACT

Mycobacterium tuberculosis, the causative agent of tuberculosis (TB), infects an estimated two billion people worldwide and is the leading cause of mortality due to infectious disease. The development of new anti-TB therapeutics is required, because of the emergence of multi-drug resistance strains as well as co-infection with other pathogens, especially HIV. Recently, the pharmaceutical company GlaxoSmithKline published the results of a high-throughput screen (HTS) of their two million compound library for anti-mycobacterial phenotypes. The screen revealed 776 compounds with significant activity against the M. tuberculosis H37Rv strain, including a subset of 177 prioritized compounds with high potency and low in vitro cytotoxicity. The next major challenge is the identification of the target proteins. Here, we use a computational approach that integrates historical bioassay data, chemical properties and structural comparisons of selected compounds to propose their potential targets in M. tuberculosis. We predicted 139 target--compound links, providing a necessary basis for further studies to characterize the mode of action of these compounds. The results from our analysis, including the predicted structural models, are available to the wider scientific community in the open source mode, to encourage further development of novel TB therapeutics.


Subject(s)
Antitubercular Agents/chemistry , Bacterial Proteins/chemistry , Computational Biology/methods , Drug Discovery/methods , Mycobacterium tuberculosis/chemistry , Amino Acid Sequence , Antitubercular Agents/metabolism , Bacterial Proteins/metabolism , Databases, Chemical , Molecular Docking Simulation , Molecular Sequence Data , Protein Conformation , Sequence Alignment
20.
Heliyon ; 10(4): e25816, 2024 Feb 29.
Article in English | MEDLINE | ID: mdl-38379967

ABSTRACT

In the context of the vision to reach peak carbon dioxide emissions before 2030 and achieve carbon neutrality before 2060, Mainland China's agricultural development will face strict carbon constraints. This paper analyzes the agricultural land-use efficiency of Mainland China's agriculture under carbon emission constraint from 1996 to 2020, based on the unexpected super SBM (Slack-based measure)-Undesirable DEA, Malmquist index model, and quartile division-GIS method. The results show that: from 1996 to 2020, the agricultural output value per land and grain output per land show an upward trend, and the agricultural carbon emissions per land of most provinces show an increasing trend and larger emissions. The agricultural land-use efficiency in Mainland China rises first and then decreases, and technological progress is the decisive path to improving the agricultural land-use efficiency in Mainland China. The average MI in the prominent grain-selling area during 1996-2020 was as high as 1.071, which was significantly higher than that in the prominent grain-producing area (1.039) and the balance area (1.030). The improvement of agricultural land-use efficiency is mostly due to technological progress, but the instability of technical input and management in land use. To improve agricultural land-use efficiency in Mainland China, we should pay attention to the precise policy formulation of low-carbon and high-quality development and strengthen government investment in the difference between space resource endowment and development status.

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